- C - Static variable in class com.hfg.bio.seq.translation.TranslationFrame
-
- C - Static variable in class com.hfg.math.RomanNumeralSymbol
-
The Roman numeral for the integer 100.
- C_NAMESPACE - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- C_region - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- C_TERM_AA_PKA_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- C_TERM_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- C_TERM_PKA_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- CA_BIND - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- CAAT_signal - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- cabins - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- Cac8I - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- CACHE_CONTROL - Static variable in class com.hfg.html.HTML
-
- CADET_BLUE - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 95, 158, 160)
- CADMIUM - Static variable in class com.hfg.chem.Element
-
- cakeSlice - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CALCIUM - Static variable in class com.hfg.chem.Element
-
- calcMassOfComponentNeeded(Matter) - Method in class com.hfg.chem.solution.AqueousSolution
-
- calcQuantityOfStockSolutionNeeded(AqueousSolution) - Method in class com.hfg.chem.solution.AqueousSolution
-
- calculate(Protein) - Method in class com.hfg.bio.proteinproperty.ChemicalFormula
-
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.ChemicalFormula
-
- calculate(Protein) - Method in class com.hfg.bio.proteinproperty.ExtinctionCoeff
-
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.ExtinctionCoeff
-
- calculate(Protein) - Method in class com.hfg.bio.proteinproperty.Hydrophobicity
-
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.Hydrophobicity
-
- calculate(Protein, S) - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
Determines the isoelectric point (the pH at which the net charge is zero) for the protein.
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.Mass
-
Determines the mass of the specified protein.
- calculate(Protein) - Method in class com.hfg.bio.proteinproperty.PctExtinctionCoeff
-
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.PctExtinctionCoeff
-
- calculate(Protein) - Method in class com.hfg.bio.proteinproperty.SeqLength
-
- calculate(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.SeqLength
-
- calculate(Protein, S) - Method in interface com.hfg.bio.proteinproperty.SingleValueProteinProperty
-
- calculate(PairwiseSeqAlignment) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- calculate(String) - Static method in class com.hfg.util.io.MD5Checksum
-
- calculate(InputStream) - Static method in class com.hfg.util.io.MD5Checksum
-
- calculateChartHeight() - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateChartWidth() - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateDistance(BioSequence, BioSequence) - Method in interface com.hfg.bio.phylogeny.DistanceMatrixModel
-
- calculateDistance(BioSequence, BioSequence) - Method in class com.hfg.bio.phylogeny.JukesCantorModel
-
Calculates the Jukes-Cantor distance score for a pair of sequences.
- calculateDistance(BioSequence, BioSequence) - Method in class com.hfg.bio.phylogeny.UncorrectedModel
-
Calculates the distance score for a pair of sequences.
- calculateImplicitHCount(Atom) - Method in class com.hfg.chem.ValenceModel
-
- calculateMassFromElementalComposition() - Method in class com.hfg.chem.Molecule
-
- calculateMD5(String) - Static method in class com.hfg.util.ChecksumUtil
-
- calculateMD5(InputStream) - Static method in class com.hfg.util.ChecksumUtil
-
- calculateSHA1(String) - Static method in class com.hfg.util.ChecksumUtil
-
- calculateSHA1(InputStream) - Static method in class com.hfg.util.ChecksumUtil
-
- calculateTrimRange(NucleicAcid) - Method in class com.hfg.bio.seq.NucleicAcidTrimmer
-
- calculateXEnd() - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateXScalingFactor(Range) - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateXStart() - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateYBottom() - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateYScalingFactor(Range) - Method in class com.hfg.svg.SvgGenerationSettings
-
- calculateYTop() - Method in class com.hfg.svg.SvgGenerationSettings
-
- CALIFORNIUM - Static variable in class com.hfg.chem.Element
-
- CAMELUS_BACTRIANUS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Camel
- CAMELUS_DROMEDARIUS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Dromedary
- cancelRowUpdates() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Cancels the updates made to the current row in this
ResultSet object.
- candela - Static variable in class com.hfg.units.LuminousIntensityUnit
-
- CANDIDATE_DIVISION_SR1_MITO - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- candyCorn - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CANIS_FAMILIARIS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Dog
- canPrecede(RomanNumeralSymbol) - Method in class com.hfg.math.RomanNumeralSymbol
-
Returns whether this symbol can legally precede the specified symbol given
the subtractive principle.
- CANT_SPLIT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- CAP_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- capacity() - Method in class com.hfg.util.StringBuilderPlus
-
- capitalize(String) - Static method in class com.hfg.util.StringUtil
-
Returns the input string with the first character capitalized.
- CAPTION - Static variable in class com.hfg.html.HTML
-
- CAPTION_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- caption_side - Static variable in class com.hfg.css.CSSProperty
-
- CARAMEL - Static variable in class com.hfg.graphics.ContrastingColorPalette
-
(153, 63, 0)
- CARBOHYD - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- CARBON - Static variable in class com.hfg.chem.Element
-
- cardinalText - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- Case - Enum in com.hfg.util
-
Enumeration for case sensitivity.
- CATALYTIC_ACTIVITY - Static variable in class com.hfg.units.QuantityType
-
- CatalyticActivityUnit - Class in com.hfg.units
-
Enumeration of catalytic activity units.
- CatalyticActivityUnit(List<SubUnit>) - Constructor for class com.hfg.units.CatalyticActivityUnit
-
- CBZ_BENZYLOXYCARBONLYL - Static variable in class com.hfg.bio.NTerminalGroup
-
- CC_LINE_CODE - Static variable in class com.hfg.bio.seq.format.EMBL
-
- CDS - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- Celcius - Static variable in class com.hfg.units.TemperatureUnit
-
- CELL - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- CELL - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_DATA_TYPE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_FORMAT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_FORMATS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_FORMULA - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- cell_line - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- CELL_STYLE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_STYLE_FORMATS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CELL_STYLES - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- cell_type - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- CELLPADDING - Static variable in class com.hfg.html.HTML
-
- CellRange - Class in com.hfg.xml.msofficexml.xlsx
-
Container for a simple spreadsheet cell range (ex: 'A1:D10').
- CellRange(CellRef, CellRef) - Constructor for class com.hfg.xml.msofficexml.xlsx.CellRange
-
- CellRange(String) - Constructor for class com.hfg.xml.msofficexml.xlsx.CellRange
-
- CellRef - Class in com.hfg.xml.msofficexml.xlsx
-
Represents a cell location in a spreadsheet (ex: 'B11').
- CellRef() - Constructor for class com.hfg.xml.msofficexml.xlsx.CellRef
-
- CellRef(String) - Constructor for class com.hfg.xml.msofficexml.xlsx.CellRef
-
- CELLSPACING - Static variable in class com.hfg.html.HTML
-
- celticKnotwork - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CENTER - Static variable in class com.hfg.html.attribute.Align
-
- Center - Class in com.hfg.html
-
Represents a center (<center>) tag.
- Center() - Constructor for class com.hfg.html.Center
-
- Center(String) - Constructor for class com.hfg.html.Center
-
- Center(HTMLTag) - Constructor for class com.hfg.html.Center
-
- Center(XMLNode) - Constructor for class com.hfg.html.Center
-
- CENTER - Static variable in class com.hfg.html.HTML
-
- CENTER - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabStyle
-
All text folowing and preceding the next tab shall be centered around the tab.
- centi - Static variable in class com.hfg.units.SI_ScalingFactor
-
- centimeter - Static variable in class com.hfg.units.LengthUnit
-
- centimeters - Static variable in class com.hfg.graphics.units.GfxUnits
-
- centromere - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- CEPHALODISCIDAE_MITO - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- CERIUM - Static variable in class com.hfg.chem.Element
-
- certificateBanner - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CertificateUtil - Class in com.hfg.cert
-
General certificate utility methods.
- CertificateUtil() - Constructor for class com.hfg.cert.CertificateUtil
-
- CESIUM - Static variable in class com.hfg.chem.Element
-
- CF_CHUNK - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- CHAIN - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- chain - Static variable in class com.hfg.units.LengthUnit
-
- CHAIN_ID_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- chainLink - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CHAINS_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- champagneBottle - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- changeColKey(CK, CK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
Changes the colkey inOldKey to inNewKey.
- changeKey(String, String) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
Changes the key name inOldKey to inNewKey.
- changeKey(K, K) - Method in class com.hfg.util.collection.SymmetricMatrix
-
- changeRowKey(RK, RK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
Changes the rowkey inOldKey to inNewKey.
- CHAR - Static variable in class com.hfg.html.attribute.Align
-
- CHAR - Static variable in class com.hfg.html.HTML
-
- CHAR_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- characters(char[], int, int) - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- characters(char[], int, int) - Method in class com.hfg.xml.parser.XMLRepeatContentHandler
-
- characters(char[], int, int) - Method in class com.hfg.xml.parser.XMLTagSAXBroadcaster
-
Collects characters of a an element when the sax parser method 'characters()'
is triggered.
- characters(char[], int, int) - Method in class com.hfg.xml.XMLEmitter
-
- charAt(int) - Method in class com.hfg.util.StringBuilderPlus
-
- Charge - Class in com.hfg.chem
-
Enumerated charge types.
- CHAROFF - Static variable in class com.hfg.html.HTML
-
- CHARSET - Static variable in class com.hfg.html.HTML
-
- CHART - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- CHART_EXTENSIONS_1_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_2_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_3_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_4_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_5_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_6_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_7_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_8_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHART_EXTENSIONS_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CHARTREUSE - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- CHARTREUSE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(127, 255, 0)
- CharUtil - Class in com.hfg.util
-
General character utility functions.
- CharUtil() - Constructor for class com.hfg.util.CharUtil
-
- CheckboxSpan - Class in com.hfg.html.custom
-
Container for a checkbox or radio button plus its label.
- CheckboxSpan(InputCheckbox, String) - Constructor for class com.hfg.html.custom.CheckboxSpan
-
- CheckboxSpan(InputCheckbox, HTMLTag) - Constructor for class com.hfg.html.custom.CheckboxSpan
-
- CheckboxSpan(InputRadio, String) - Constructor for class com.hfg.html.custom.CheckboxSpan
-
- CheckboxSpan(InputRadio, HTMLTag) - Constructor for class com.hfg.html.custom.CheckboxSpan
-
- CheckboxState - Enum in com.hfg.html.custom
-
Enumeration of visual checkbox states.
- CHECKED - Static variable in class com.hfg.html.HTML
-
- checkedBarBlack - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- checkedBarColor - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- checkered - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- ChecksumUtil - Class in com.hfg.util
-
Functions for calculating and validating common checksums.
- ChecksumUtil() - Constructor for class com.hfg.util.ChecksumUtil
-
- checkXMLNameValidity(String) - Static method in class com.hfg.xml.XMLUtil
-
Is the tag or element name valid?
- CHEMICAL - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- CHEMICAL_LIST - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- ChemicalFormula - Class in com.hfg.bio.proteinproperty
-
Chemical formula packaged as a protein property for ease of integration with
other protein properties.
- ChemicalFormulaParseException - Exception in com.hfg.chem
-
Indicates an exception during parsing of a chemical formula.
- ChemicalFormulaParseException(String) - Constructor for exception com.hfg.chem.ChemicalFormulaParseException
-
- ChemicalFormulaParseException(String, Throwable) - Constructor for exception com.hfg.chem.ChemicalFormulaParseException
-
- ChemicalFormulaParseException(Throwable) - Constructor for exception com.hfg.chem.ChemicalFormulaParseException
-
- ChemIOException - Exception in com.hfg.chem.format
-
Indicates an exception during small molecule I/O manipulation.
- ChemIOException(String) - Constructor for exception com.hfg.chem.format.ChemIOException
-
- ChemIOException(String, Throwable) - Constructor for exception com.hfg.chem.format.ChemIOException
-
- ChemIOException(Throwable) - Constructor for exception com.hfg.chem.format.ChemIOException
-
- Chicago - Class in com.hfg.citation
-
Chicago Manual of Style (CMS) citation style.
- Chicago() - Constructor for class com.hfg.citation.Chicago
-
- chicago - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- chineseCounting - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- chineseCountingThousand - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- chineseLegalSimplified - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- CHLORINE - Static variable in class com.hfg.chem.Element
-
- CHLOROPHYCEAN_MITO - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- CHOCOLATE - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- CHOCOLATE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(210, 105, 30)
- CHOICE - Static variable in class com.hfg.xml.xsd.XsdXML
-
- chosung - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- Chothia - Static variable in class com.hfg.bio.proteinproperty.Hydrophobicity
-
- christmasTree - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CHROMIUM - Static variable in class com.hfg.chem.Element
-
- chromosome - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- CHROMOSOME - Static variable in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- CHROMOSOME_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- chunk(Collection<T>, int) - Static method in class com.hfg.util.collection.CollectionUtil
-
- chunkList(List<T>, int) - Static method in class com.hfg.util.collection.CollectionUtil
-
- CHYMOTRYPSIN - Static variable in class com.hfg.bio.Protease
-
- CILIATE_NUCLEAR - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- CIRCLE - Static variable in class com.hfg.graphics.Shape
-
- CIRCLE - Static variable in class com.hfg.html.attribute.Shape
-
- circle - Static variable in class com.hfg.svg.SVG
-
- circlesLines - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- circlesRectangles - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CIRCULAR - Static variable in class com.hfg.bio.seq.SeqTopology
-
- citation - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- Citation - Class in com.hfg.citation
-
Citation data object.
- Citation() - Constructor for class com.hfg.citation.Citation
-
- Citation(String) - Constructor for class com.hfg.citation.Citation
-
- CITATION - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- CITATION_SUBSET - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- CitationFormat - Interface in com.hfg.citation
-
Interface for citation formats.
- CitationRetriever<C extends Citation> - Interface in com.hfg.citation
-
Interface for classes designed for retrieval of citation data.
- CitationType - Enum in com.hfg.citation
-
Enumeration of citation types.
- CITED_MEDIUM_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- CITRULLINE - Static variable in class com.hfg.bio.AminoAcid
-
- CLADE - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- CladogramStyle - Enum in com.hfg.bio.phylogeny
-
- ClaI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- CLASS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- CLASS - Static variable in class com.hfg.html.HTML
-
- CLASS - Static variable in class com.hfg.svg.SvgAttr
-
- CLASS_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- CLASS_ATT - Static variable in class com.hfg.setting.SettingXML
-
- CLASS_ATT - Static variable in class com.hfg.sql.table.DatabaseXML
-
- CLASS_ATT - Static variable in class com.hfg.xml.HfgXML
-
- ClassExplorer - Class in com.hfg.util
-
General utility for exploring java classes.
- ClassExplorer() - Constructor for class com.hfg.util.ClassExplorer
-
- classicalWave - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CLASSID - Static variable in class com.hfg.html.HTML
-
- clear() - Method in class com.hfg.bio.AminoAcidSet
-
- clear() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- clear() - Method in class com.hfg.chem.ElementalComposition
-
- clear - Static variable in class com.hfg.css.CSSProperty
-
- clear() - Method in class com.hfg.math.SimpleSampleStats
-
- clear() - Method in class com.hfg.util.collection.BiHashMap
-
- clear() - Method in class com.hfg.util.collection.DirtyList
-
- clear() - Method in class com.hfg.util.collection.DirtyMap
-
- clear() - Method in class com.hfg.util.collection.DirtyProperties
-
- clear() - Method in class com.hfg.util.collection.OrderedMap
-
- clear() - Method in class com.hfg.util.scheduler.Scheduler
-
- CLEAR - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabStyle
-
The current tab stop is cleared and shall be removed.
- clear() - Method in class com.hfg.xml.parser.XMLStringBuffer
-
- clear() - Method in class com.hfg.xml.XMLAttributeMap
-
- clearAttributes() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- clearAttributes() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- clearAttributes() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- clearAttributes() - Method in class com.hfg.chem.Molecule
-
- clearAttributes() - Method in class com.hfg.util.AttributeMgr
-
- clearCachedData() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- clearCachedValues() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- clearCalculatedProperties() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- clearCalculatedProperties() - Method in class com.hfg.bio.seq.Protein
-
- clearCalculatedProperties() - Method in class com.hfg.chem.Molecule
-
- clearCol(CK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- clearCol(CK) - Method in class com.hfg.util.collection.NumberMatrix
-
- clearContent() - Method in class com.hfg.html.Script
-
- clearContent() - Method in class com.hfg.svg.SvgScript
-
- clearContent() - Method in class com.hfg.xml.XMLCDATA
-
Clears content (not subtags).
- clearContent() - Method in class com.hfg.xml.XMLComment
-
Clears content (not subtags).
- clearContent() - Method in interface com.hfg.xml.XMLContainer
-
Clears content (not subtags).
- clearContent() - Method in class com.hfg.xml.XMLContainerImpl
-
- clearDbXrefs() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- clearDbXrefs() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- clearElementalComposition() - Method in class com.hfg.chem.Molecule
-
- clearElementalCompositionAndCalculatedProperties() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- clearElementalCompositionAndCalculatedProperties() - Method in class com.hfg.bio.seq.Protein
-
- clearEnvVars() - Method in class com.hfg.util.Executor
-
Clears the list of environment variables to be set when executing the command.
- clearFeatures() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- clearFeatures() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- clearFlag(String) - Method in class com.hfg.util.collection.DataTable
-
- clearFlags() - Method in class com.hfg.util.collection.DataTable
-
- clearGroupColumns() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- clearHandlers(Logger) - Static method in class com.hfg.util.LoggingUtil
-
Removes any existing handlers from the specified Logger.
- clearId() - Method in class com.hfg.sql.table.DatabaseRowWithIntPrimaryKey
-
- clearId() - Method in class com.hfg.sql.table.DatabaseRowWithLongPrimaryKey
-
- clearKeywords() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- clearKeywords() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- clearParseExceptions() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- clearParseExceptions() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- clearRect(int, int, int, int) - Method in class com.hfg.graphics.SvgGraphics2D
-
- clearReferences() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- clearReferences() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- clearRemoteFileList() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- clearRemoteFileList() - Method in class com.hfg.util.io.FileSystemRemoteFileLister
-
- clearRemoteFileList() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- clearRemoteFileList() - Method in class com.hfg.util.io.HTTPRemoteFileLister
-
- clearRow(RK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- clearRow(RK) - Method in class com.hfg.util.collection.NumberMatrix
-
- clearStyle() - Method in class com.hfg.html.Head
-
Removes all style content in the header.
- clearSubtags() - Method in interface com.hfg.xml.XMLContainer
-
Removes all subtags from this object.
- clearSubtags() - Method in class com.hfg.xml.XMLContainerImpl
-
- clearUAC_Flag(UserAccountControlFlag) - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- clearWarnings() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- clearWarnings() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Clears all warnings reported on this ResultSet object.
- ClickEvent - Class in com.hfg.ui
-
Click event encapsulation.
- ClickEvent(ClickEvent.Modifier...) - Constructor for class com.hfg.ui.ClickEvent
-
- ClickEvent.Modifier - Enum in com.hfg.ui
-
- ClickLabelSpan - Class in com.hfg.html.custom
-
Container for things like a custom tri-state plus its label.
- ClickLabelSpan(HTMLTagWithCoreEvents, String) - Constructor for class com.hfg.html.custom.ClickLabelSpan
-
- ClickLabelSpan(HTMLTagWithCoreEvents, HTMLTag) - Constructor for class com.hfg.html.custom.ClickLabelSpan
-
- CLIENT_DATA - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- clip - Static variable in class com.hfg.css.CSSProperty
-
- clip(Shape) - Method in class com.hfg.graphics.SvgGraphics2D
-
- clipRect(int, int, int, int) - Method in class com.hfg.graphics.SvgGraphics2D
-
- clocks - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- clone() - Method in class com.hfg.bio.AminoAcid
-
Returns an unlocked copy of the AminoAcid.
- clone() - Method in class com.hfg.bio.AminoAcidSet
-
- clone() - Method in class com.hfg.bio.DigestSettings
-
- clone() - Method in class com.hfg.bio.KaSet
-
- clone() - Method in class com.hfg.bio.Nucleotide
-
Returns an unlocked copy of the Nucleotide.
- clone() - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- clone() - Method in class com.hfg.bio.proteinproperty.SimpleProteinPropertyCalcSettings
-
- clone() - Method in class com.hfg.bio.seq.alignment.AlignedQuery
-
- clone() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- clone() - Method in class com.hfg.bio.seq.alignment.AlignedSubject
-
- clone() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- clone() - Method in class com.hfg.bio.seq.alignment.GapPenalties
-
- clone() - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- clone() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- clone() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- clone() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- clone() - Method in class com.hfg.bio.seq.AminoAcidComposition
-
- clone() - Method in interface com.hfg.bio.seq.BioSequence
-
- clone() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- clone() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- Clone - Class in com.hfg.bio.seq
-
Sequence clone name container.
- Clone(String) - Constructor for class com.hfg.bio.seq.Clone
-
- clone() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- clone - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- clone() - Method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureLocation
-
- clone() - Method in class com.hfg.bio.seq.GenomicLocation
-
- clone() - Method in class com.hfg.bio.seq.NucleicAcid
-
- clone() - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- clone() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- clone() - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- clone() - Method in class com.hfg.bio.seq.Protein
-
- clone() - Method in class com.hfg.bio.seq.ProteinXLink
-
- clone() - Method in class com.hfg.bio.seq.SeqLocation
-
- clone() - Method in class com.hfg.bio.seq.SeqQualityScores
-
- clone() - Method in class com.hfg.chem.Molecule
-
Returns an unlocked copy of the Molecule.
- clone() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- clone() - Method in class com.hfg.graphics.ColorSpec
-
- clone() - Method in class com.hfg.graphics.PageMargins
-
- clone() - Method in class com.hfg.graphics.PageSetup
-
- clone() - Method in class com.hfg.html.custom.TextareaExpander
-
- clone() - Method in class com.hfg.html.HTMLTag
-
- clone() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- clone() - Method in class com.hfg.math.Counter
-
- clone() - Method in class com.hfg.math.IntRange
-
Deprecated.
- clone() - Method in class com.hfg.math.Range
-
- clone() - Method in class com.hfg.setting.BooleanMapSetting
-
- clone() - Method in class com.hfg.setting.BooleanSetting
-
- clone() - Method in class com.hfg.setting.ComplexSetting
-
- clone() - Method in class com.hfg.setting.FloatMapSetting
-
- clone() - Method in class com.hfg.setting.FloatSetting
-
- clone() - Method in class com.hfg.setting.IntListSetting
-
- clone() - Method in class com.hfg.setting.IntSetting
-
- clone() - Method in class com.hfg.setting.LongListSetting
-
- clone() - Method in class com.hfg.setting.LongSetting
-
- clone() - Method in interface com.hfg.setting.Setting
-
- clone() - Method in class com.hfg.setting.Settings
-
- clone() - Method in class com.hfg.setting.ShortSetting
-
- clone() - Method in class com.hfg.setting.StringListSetting
-
- clone() - Method in class com.hfg.setting.StringMapSetting
-
- clone() - Method in class com.hfg.setting.StringSetting
-
- clone() - Method in class com.hfg.sql.table.DatabaseCol
-
- clone() - Method in class com.hfg.sql.table.DatabaseRow
-
- clone() - Method in class com.hfg.sql.table.DatabaseTable
-
- clone() - Method in class com.hfg.sql.table.field.DatabaseField
-
- clone() - Method in class com.hfg.util.AttributeMgr
-
- clone() - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- clone() - Method in class com.hfg.util.collection.MatrixCell
-
- clone() - Method in class com.hfg.util.collection.SparseMatrix
-
- clone() - Method in class com.hfg.util.collection.SymmetricMatrix
-
- clone() - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- clone() - Method in class com.hfg.util.collection.SymmetricNumberMatrix
-
- clone() - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.part.XlsxPart
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- clone() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- clone() - Method in class com.hfg.xml.XMLAttribute
-
- clone() - Method in class com.hfg.xml.XMLBasedDoc
-
- clone() - Method in class com.hfg.xml.XMLCDATA
-
- clone() - Method in class com.hfg.xml.XMLComment
-
- clone() - Method in class com.hfg.xml.XMLContainerImpl
-
- clone() - Method in class com.hfg.xml.XMLDoc
-
- clone() - Method in interface com.hfg.xml.XMLizable
-
- clone() - Method in class com.hfg.xml.XMLNamespace
-
- clone() - Method in class com.hfg.xml.XMLProcessingInstruction
-
- clone() - Method in class com.hfg.xml.XMLTag
-
- CLONE_ATTR - Static variable in class com.hfg.bio.seq.format.EMBL
-
- clone_lib - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- cloneNode(boolean) - Method in class com.hfg.xml.XMLAttribute
-
- close() - Method in class com.hfg.bio.seq.format.BufferedSeqReader
-
- close() - Method in class com.hfg.chem.format.BufferedMoleculeReader
-
- close() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- close() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Releases this ResultSet object's database and
JDBC resources immediately instead of waiting for
this to happen when it is automatically closed.
- close(ResultSet) - Static method in class com.hfg.sql.SQLUtil
-
- close(Statement) - Static method in class com.hfg.sql.SQLUtil
-
- close(Connection) - Static method in class com.hfg.sql.SQLUtil
-
- close() - Method in class com.hfg.util.io.GZIPCompressInputStream
-
- close() - Method in class com.hfg.util.io.NoCloseBufferedInputStream
-
- close() - Method in class com.hfg.util.io.NoCloseBufferedReader
-
- close() - Method in class com.hfg.util.io.NoCloseInputStream
-
- close() - Method in class com.hfg.util.io.NoCloseOutputStream
-
- close() - Method in class com.hfg.util.io.NoClosePrintWriter
-
- close(InputStream) - Static method in class com.hfg.util.io.StreamUtil
-
Convenience method that does a null check before closing the stream.
- close(OutputStream) - Static method in class com.hfg.util.io.StreamUtil
-
Convenience method that does a null check before closing the stream.
- close(Reader) - Static method in class com.hfg.util.io.StreamUtil
-
Convenience function that does a null check before closing the Reader and
wrapps IOExceptions in RuntimeIOExceptions so they don't have to be caught.
- close(Writer) - Static method in class com.hfg.util.io.StreamUtil
-
Convenience function that does a null check before closing the Writer and
wrapps IOExceptions in RuntimeIOExceptions so they don't have to be caught.
- closeOnCompletion() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- closeResultSetAndStatement(ResultSet) - Static method in class com.hfg.sql.SQLUtil
-
- CMG_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- CN - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- CN - Static variable in class com.hfg.ldap.LDAP_Field
-
- CO_LINE_CODE - Static variable in class com.hfg.bio.seq.format.EMBL
-
- COBALT - Static variable in class com.hfg.chem.Element
-
- CODE - Static variable in class com.hfg.html.HTML
-
- CODE_PAGE - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- CODEBASE - Static variable in class com.hfg.html.HTML
-
- codePointAt(int) - Method in class com.hfg.util.StringBuilderPlus
-
- codePointBefore(int) - Method in class com.hfg.util.StringBuilderPlus
-
- codePointCount(int, int) - Method in class com.hfg.util.StringBuilderPlus
-
- CODETYPE - Static variable in class com.hfg.html.HTML
-
- Codon - Class in com.hfg.bio.seq.translation
-
Codon container.
- Codon(String) - Constructor for class com.hfg.bio.seq.translation.Codon
-
- Codon(XMLTag) - Constructor for class com.hfg.bio.seq.translation.Codon
-
- codon_start - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- CodonTable - Class in com.hfg.bio.seq.translation
-
Table that maps codons to their respective amino acids.
- CodonTable(NCBITaxon) - Constructor for class com.hfg.bio.seq.translation.CodonTable
-
- CodonTable(XMLTag) - Constructor for class com.hfg.bio.seq.translation.CodonTable
-
- CodonTable(String) - Constructor for class com.hfg.bio.seq.translation.CodonTable
-
- CodonUsage - Class in com.hfg.bio.seq.translation
-
Codon usage data container.
- CodonUsage() - Constructor for class com.hfg.bio.seq.translation.CodonUsage
-
- CodonUsage(XMLTag) - Constructor for class com.hfg.bio.seq.translation.CodonUsage
-
- COHORT - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- COILED - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- Col - Class in com.hfg.html
-
Table column (<col>) tag.
- Col() - Constructor for class com.hfg.html.Col
-
- Col(XMLNode) - Constructor for class com.hfg.html.Col
-
- COL - Static variable in class com.hfg.html.HTML
-
- COL - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- COL_OFFSET - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- Colgroup - Class in com.hfg.html
-
Table column group (<colgroup>) tag.
- Colgroup() - Constructor for class com.hfg.html.Colgroup
-
- Colgroup(XMLNode) - Constructor for class com.hfg.html.Colgroup
-
- COLGROUP - Static variable in class com.hfg.html.HTML
-
- colKeySet() - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- colKeySet() - Method in class com.hfg.util.collection.SparseMatrix
-
- collected_by - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- collection_date - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- CollectionSizeComparator - Class in com.hfg.util.collection
-
A simple Comparator that will order a Collection of Collections from largest to smallest.
- CollectionSizeComparator() - Constructor for class com.hfg.util.collection.CollectionSizeComparator
-
- CollectionUtil - Class in com.hfg.util.collection
-
Collection utility functions.
- CollectionUtil() - Constructor for class com.hfg.util.collection.CollectionUtil
-
- color(String) - Static method in class com.hfg.css.CSS
-
- color(Color) - Static method in class com.hfg.css.CSS
-
- color - Static variable in class com.hfg.css.CSSProperty
-
- COLOR - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COLOR - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- COLOR_0 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 0)
- COLOR_1 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 255)
- COLOR_10 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 0, 0)
- COLOR_11 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 255, 0)
- COLOR_12 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 255)
- COLOR_13 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 0)
- COLOR_14 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 0, 255)
- COLOR_15 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 255, 255)
- COLOR_16 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 0, 0)
- COLOR_17 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 128, 0)
- COLOR_18 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 128)
- COLOR_19 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 128, 0)
- COLOR_2 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 0, 0)
- COLOR_20 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 0, 128)
- COLOR_21 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 128, 128)
- COLOR_22 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(192, 192, 192)
- COLOR_23 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 128, 128)
- COLOR_24 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 153, 255)
- COLOR_25 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 51, 102)
- COLOR_26 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 204)
- COLOR_27 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(204, 255, 255)
- COLOR_28 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(102, 0, 102)
- COLOR_29 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 128, 128)
- COLOR_3 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 255, 0)
- COLOR_30 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 102, 204)
- COLOR_31 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(204, 204, 255)
- COLOR_32 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 128)
- COLOR_33 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 0, 255)
- COLOR_34 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 0)
- COLOR_35 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 255, 255)
- COLOR_36 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 0, 128)
- COLOR_37 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(128, 0, 0)
- COLOR_38 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 128, 128)
- COLOR_39 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 255)
- COLOR_4 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 255)
- COLOR_40 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 204, 255)
- COLOR_41 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(204, 255, 255)
- COLOR_42 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(204, 255, 204)
- COLOR_43 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 153)
- COLOR_44 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 204, 255)
- COLOR_45 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 153, 204)
- COLOR_46 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(204, 153, 255)
- COLOR_47 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 204, 153)
- COLOR_48 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 102, 255)
- COLOR_49 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 204, 204)
- COLOR_5 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 0)
- COLOR_50 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 204, 0)
- COLOR_51 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 204, 0)
- COLOR_52 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 153, 0)
- COLOR_53 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 102, 0)
- COLOR_54 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(102, 102, 153)
- COLOR_55 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(150, 150, 150)
- COLOR_56 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 51, 102)
- COLOR_57 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 153, 102)
- COLOR_58 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 51, 0)
- COLOR_59 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 51, 0)
- COLOR_6 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 0, 255)
- COLOR_60 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 51, 0)
- COLOR_61 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(153, 51, 102)
- COLOR_62 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 51, 153)
- COLOR_63 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 51, 51, 51)
- COLOR_64 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
- COLOR_65 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
- COLOR_7 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 255, 255)
- COLOR_8 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
( 0, 0, 0)
- COLOR_9 - Static variable in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
(255, 255, 255)
- COLOR_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- COLOR_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COLOR_ID_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- color_interpolation_filters - Static variable in class com.hfg.css.CSSProperty
-
- color_profile - Static variable in class com.hfg.css.CSSProperty
-
- COLOR_SCALE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- COLOR_SCHEME - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- colorByNumber(Number) - Method in interface com.hfg.graphics.Colorist
-
- colorByNumber(Value) - Method in interface com.hfg.graphics.Colorist
-
- colorByNumber(Value) - Method in class com.hfg.graphics.PaletteColorist
-
- colorByNumber(Number) - Method in class com.hfg.graphics.PaletteColorist
-
- colorByNumber(Value) - Method in class com.hfg.graphics.RangeColorist
-
- colorByNumber(Number) - Method in class com.hfg.graphics.RangeColorist
-
- colorByNumber(Value) - Method in class com.hfg.graphics.ScaleColorist
-
- colorByNumber(Number) - Method in class com.hfg.graphics.ScaleColorist
-
- ColorChannel - Enum in com.hfg.graphics
-
Enumeration of color channel values.
- ColorInterpolationFilters - Enum in com.hfg.svg.filtereffect
-
Enumeration of SVG (Scalable Vector Graphics) filter effect 'color-interpolation-filters'
attribute values.
- colorInterpolationFilters - Static variable in class com.hfg.svg.SvgAttr
-
- Colorist - Interface in com.hfg.graphics
-
Interface for color assignment.
- ColorMatrixType - Enum in com.hfg.svg.filtereffect
-
Enumeration of SVG (Scalable Vector Graphics) filter effect 'feColorMatrix' types.
- ColorPalette - Interface in com.hfg.graphics
-
Color palette interface.
- ColorPaletteImpl - Class in com.hfg.graphics
-
A set of 26 high contrast colors.
- ColorPaletteImpl(Collection<? extends HTMLColor>) - Constructor for class com.hfg.graphics.ColorPaletteImpl
-
- ColorPaletteImpl(XMLTag) - Constructor for class com.hfg.graphics.ColorPaletteImpl
-
- ColorRule - Interface in com.hfg.graphics
-
Interface for color assignment.
- ColorScale - Class in com.hfg.graphics
-
Color scale created from two or more colors.
- ColorScale(List<Color>) - Constructor for class com.hfg.graphics.ColorScale
-
- ColorScale(Color...) - Constructor for class com.hfg.graphics.ColorScale
-
- ColorScale(XMLTag) - Constructor for class com.hfg.graphics.ColorScale
-
- ColorSpec - Class in com.hfg.graphics
-
Encapsulates foreground and background color specifications.
- ColorSpec() - Constructor for class com.hfg.graphics.ColorSpec
-
- ColorSpec(XMLTag) - Constructor for class com.hfg.graphics.ColorSpec
-
- colorToCssValue(Color) - Static method in class com.hfg.css.CssUtil
-
- colorToCT_Color(Color) - Static method in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
Converts a Color object in to a hex string as Alpha Red Green Blue.
- colorToHex(Color) - Static method in class com.hfg.graphics.ColorUtil
-
Converts a Color object in to a hex string.
- ColorUtil - Class in com.hfg.graphics
-
Color-related utility functions.
- ColorUtil() - Constructor for class com.hfg.graphics.ColorUtil
-
- COLS - Static variable in class com.hfg.html.HTML
-
- COLSPAN - Static variable in class com.hfg.html.HTML
-
- COLUMN - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- COLUMN - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- column_count - Static variable in class com.hfg.css.CSSProperty
-
- column_fill - Static variable in class com.hfg.css.CSSProperty
-
- column_gap - Static variable in class com.hfg.css.CSSProperty
-
- column_rule - Static variable in class com.hfg.css.CSSProperty
-
- column_rule_color - Static variable in class com.hfg.css.CSSProperty
-
- column_rule_style - Static variable in class com.hfg.css.CSSProperty
-
- column_rule_width - Static variable in class com.hfg.css.CSSProperty
-
- column_span - Static variable in class com.hfg.css.CSSProperty
-
- column_width - Static variable in class com.hfg.css.CSSProperty
-
- columns - Static variable in class com.hfg.css.CSSProperty
-
- COLUMNS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COLUMNS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- com.hfg - package com.hfg
-
- com.hfg.anttask - package com.hfg.anttask
-
FileProperty and GetWild are two wildcard-enabled ant tasks that are useful for matching
files whose names have a common root but a version or date extension that is variable.
- com.hfg.bio - package com.hfg.bio
-
- com.hfg.bio.glyco - package com.hfg.bio.glyco
-
- com.hfg.bio.molbio - package com.hfg.bio.molbio
-
- com.hfg.bio.phylogeny - package com.hfg.bio.phylogeny
-
- com.hfg.bio.proteinproperty - package com.hfg.bio.proteinproperty
-
Classes for calculating physical properties of proteins.
- com.hfg.bio.seq - package com.hfg.bio.seq
-
- com.hfg.bio.seq.alignment - package com.hfg.bio.seq.alignment
-
- com.hfg.bio.seq.alignment.assembler - package com.hfg.bio.seq.alignment.assembler
-
- com.hfg.bio.seq.alignment.blast - package com.hfg.bio.seq.alignment.blast
-
- com.hfg.bio.seq.alignment.matrix - package com.hfg.bio.seq.alignment.matrix
-
- com.hfg.bio.seq.alignment.muscle - package com.hfg.bio.seq.alignment.muscle
-
- com.hfg.bio.seq.format - package com.hfg.bio.seq.format
-
- com.hfg.bio.seq.format.abi - package com.hfg.bio.seq.format.abi
-
- com.hfg.bio.seq.format.feature - package com.hfg.bio.seq.format.feature
-
- com.hfg.bio.seq.format.feature.genbank - package com.hfg.bio.seq.format.feature.genbank
-
- com.hfg.bio.seq.format.feature.qualifier - package com.hfg.bio.seq.format.feature.qualifier
-
- com.hfg.bio.seq.format.feature.uniprot - package com.hfg.bio.seq.format.feature.uniprot
-
- com.hfg.bio.seq.format.genbank - package com.hfg.bio.seq.format.genbank
-
- com.hfg.bio.seq.genomic - package com.hfg.bio.seq.genomic
-
- com.hfg.bio.seq.genomic.assembly - package com.hfg.bio.seq.genomic.assembly
-
- com.hfg.bio.seq.graphics - package com.hfg.bio.seq.graphics
-
- com.hfg.bio.seq.pattern - package com.hfg.bio.seq.pattern
-
- com.hfg.bio.seq.translation - package com.hfg.bio.seq.translation
-
- com.hfg.bio.taxonomy - package com.hfg.bio.taxonomy
-
NCBI & Uniprot taxonomy classes.
- com.hfg.bio.taxonomy.ncbi - package com.hfg.bio.taxonomy.ncbi
-
- com.hfg.bio.taxonomy.uniprot - package com.hfg.bio.taxonomy.uniprot
-
- com.hfg.cert - package com.hfg.cert
-
- com.hfg.chem - package com.hfg.chem
-
- com.hfg.chem.format - package com.hfg.chem.format
-
- com.hfg.chem.solution - package com.hfg.chem.solution
-
- com.hfg.citation - package com.hfg.citation
-
- com.hfg.citation.ncbi - package com.hfg.citation.ncbi
-
- com.hfg.css - package com.hfg.css
-
Implementation of CSS concepts to allow CSS content to be created, parsed,
and/or manipulated in code.
- com.hfg.datetime - package com.hfg.datetime
-
- com.hfg.exception - package com.hfg.exception
-
General exception classes.
- com.hfg.graphics - package com.hfg.graphics
-
- com.hfg.graphics.font - package com.hfg.graphics.font
-
- com.hfg.graphics.units - package com.hfg.graphics.units
-
Classes for normalizing graphical units.
- com.hfg.html - package com.hfg.html
-
The HTML classes in this package can be used to construct HTML or XHTML in an object-oriented fashion.
- com.hfg.html.attribute - package com.hfg.html.attribute
-
- com.hfg.html.custom - package com.hfg.html.custom
-
- com.hfg.image - package com.hfg.image
-
- com.hfg.javascript - package com.hfg.javascript
-
- com.hfg.javascript.ext - package com.hfg.javascript.ext
-
- com.hfg.ldap - package com.hfg.ldap
-
- com.hfg.ldap.ad - package com.hfg.ldap.ad
-
- com.hfg.math - package com.hfg.math
-
- com.hfg.math.units - package com.hfg.math.units
-
- com.hfg.network - package com.hfg.network
-
- com.hfg.security - package com.hfg.security
-
- com.hfg.setting - package com.hfg.setting
-
- com.hfg.sql - package com.hfg.sql
-
- com.hfg.sql.jdbc - package com.hfg.sql.jdbc
-
JDBC4-compatible classes for database access.
- com.hfg.sql.jdbc.postgresql - package com.hfg.sql.jdbc.postgresql
-
- com.hfg.sql.table - package com.hfg.sql.table
-
- com.hfg.sql.table.field - package com.hfg.sql.table.field
-
- com.hfg.svg - package com.hfg.svg
-
- com.hfg.svg.filtereffect - package com.hfg.svg.filtereffect
-
- com.hfg.svg.path - package com.hfg.svg.path
-
- com.hfg.ui - package com.hfg.ui
-
- com.hfg.units - package com.hfg.units
-
- com.hfg.units.length - package com.hfg.units.length
-
- com.hfg.util - package com.hfg.util
-
Various utility classes.
- com.hfg.util.collection - package com.hfg.util.collection
-
- com.hfg.util.io - package com.hfg.util.io
-
Various IO utility classes.
- com.hfg.util.mime - package com.hfg.util.mime
-
- com.hfg.util.scheduler - package com.hfg.util.scheduler
-
- com.hfg.webapp - package com.hfg.webapp
-
- com.hfg.webapp.filter.auth - package com.hfg.webapp.filter.auth
-
- com.hfg.xml - package com.hfg.xml
-
Classes for XML handling.
- com.hfg.xml.creativecommons - package com.hfg.xml.creativecommons
-
- com.hfg.xml.dublincore - package com.hfg.xml.dublincore
-
- com.hfg.xml.msoffice2003.spreadsheetml - package com.hfg.xml.msoffice2003.spreadsheetml
-
The classes in this package can be used to construct simple Microsoft Office 2003 Excel spreadsheets in an object-oriented fashion.
- com.hfg.xml.msofficexml - package com.hfg.xml.msofficexml
-
- com.hfg.xml.msofficexml.docx - package com.hfg.xml.msofficexml.docx
-
- com.hfg.xml.msofficexml.docx.drawingml - package com.hfg.xml.msofficexml.docx.drawingml
-
- com.hfg.xml.msofficexml.docx.drawingml.color - package com.hfg.xml.msofficexml.docx.drawingml.color
-
- com.hfg.xml.msofficexml.docx.drawingml.effect - package com.hfg.xml.msofficexml.docx.drawingml.effect
-
- com.hfg.xml.msofficexml.docx.drawingml.fill - package com.hfg.xml.msofficexml.docx.drawingml.fill
-
- com.hfg.xml.msofficexml.docx.drawingml.font - package com.hfg.xml.msofficexml.docx.drawingml.font
-
- com.hfg.xml.msofficexml.docx.drawingml.line - package com.hfg.xml.msofficexml.docx.drawingml.line
-
- com.hfg.xml.msofficexml.docx.drawingml.line.dash - package com.hfg.xml.msofficexml.docx.drawingml.line.dash
-
- com.hfg.xml.msofficexml.docx.drawingml.line.join - package com.hfg.xml.msofficexml.docx.drawingml.line.join
-
- com.hfg.xml.msofficexml.docx.drawingml.text - package com.hfg.xml.msofficexml.docx.drawingml.text
-
- com.hfg.xml.msofficexml.docx.drawingml.theme - package com.hfg.xml.msofficexml.docx.drawingml.theme
-
- com.hfg.xml.msofficexml.docx.part - package com.hfg.xml.msofficexml.docx.part
-
- com.hfg.xml.msofficexml.docx.wordprocessingml - package com.hfg.xml.msofficexml.docx.wordprocessingml
-
- com.hfg.xml.msofficexml.docx.wordprocessingml.field - package com.hfg.xml.msofficexml.docx.wordprocessingml.field
-
- com.hfg.xml.msofficexml.docx.wordprocessingml.style - package com.hfg.xml.msofficexml.docx.wordprocessingml.style
-
- com.hfg.xml.msofficexml.part - package com.hfg.xml.msofficexml.part
-
- com.hfg.xml.msofficexml.xlsx - package com.hfg.xml.msofficexml.xlsx
-
- com.hfg.xml.msofficexml.xlsx.part - package com.hfg.xml.msofficexml.xlsx.part
-
- com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing - package com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
- com.hfg.xml.msofficexml.xlsx.spreadsheetml - package com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
- com.hfg.xml.msofficexml.xlsx.spreadsheetml.style - package com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- com.hfg.xml.parser - package com.hfg.xml.parser
-
Contains SaxyParser - a basic XML parser alternative to Xerces.
- com.hfg.xml.rdf - package com.hfg.xml.rdf
-
- com.hfg.xml.xsd - package com.hfg.xml.xsd
-
Basic code for Xsd parsing.
- Combinations - Class in com.hfg.math
-
Generate combinations of the specified size using the specified list of objects.
- Combinations() - Constructor for class com.hfg.math.Combinations
-
- combinations(List<T>, int) - Static method in class com.hfg.math.Combinations
-
- combinationsWithRepetition(List<T>, int) - Static method in class com.hfg.math.Combinations
-
- combine(AlignmentScoring) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- combine(WmlTextRunProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- COMMAND_LINE_PARAMS - Static variable in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- COMMAND_LINE_PARAMS - Static variable in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- COMMENT - Static variable in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- COMMENT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- COMMENT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMMENT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- comment(char[], int, int) - Method in class com.hfg.xml.XMLEmitter
-
- COMMENT_ATTR - Static variable in class com.hfg.bio.seq.format.GenBank
-
- COMMENT_LIST - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- COMMENT_REF - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMMENT_TEXT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- COMMENTS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMMENTS - Static variable in class com.hfg.xml.msofficexml.OfficeOpenXMLContentType
-
- COMMENTS - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- COMMENTS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- COMMENTS_FILE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- CommentsPart - Class in com.hfg.xml.msofficexml.part
-
Represents an Office Open XML comments part.
- CommentsPart(Docx) - Constructor for class com.hfg.xml.msofficexml.part.CommentsPart
-
- commit() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- COMMON_DRAWINGML_NON_VISUAL_PROPS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMMON_NAME - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- CommonJS - Class in com.hfg.javascript
-
Repository of reusable javascript snippets.
- CommonJS() - Constructor for class com.hfg.javascript.CommonJS
-
- compare - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- compare(int, int) - Static method in class com.hfg.math.NumUtil
-
Compares the absolute value of two ints.
- compare(Collection, Collection) - Method in class com.hfg.util.collection.CollectionSizeComparator
-
- compare(Map.Entry<? extends Object, ? extends Number>, Map.Entry<? extends Object, ? extends Number>) - Method in class com.hfg.util.collection.MapEntryNumberValueComparator
-
- compare(T, T) - Static method in class com.hfg.util.CompareUtil
-
- compare(T, T) - Static method in class com.hfg.util.CompareUtil
-
- compare(String, String) - Static method in class com.hfg.util.CompareUtil
-
- compare(double, double) - Static method in class com.hfg.util.CompareUtil
-
- compare(int, int) - Static method in class com.hfg.util.CompareUtil
-
- compare(Integer, Integer) - Static method in class com.hfg.util.CompareUtil
-
- compare(char, char) - Static method in class com.hfg.util.CompareUtil
-
- compare(Float, Float) - Static method in class com.hfg.util.CompareUtil
-
- compare(Long, Long) - Static method in class com.hfg.util.CompareUtil
-
- compare(Short, Short) - Static method in class com.hfg.util.CompareUtil
-
- compare(Double, Double) - Static method in class com.hfg.util.CompareUtil
-
- compare(List<T>, List<T>) - Static method in class com.hfg.util.CompareUtil
-
- compare(Set<T>, Set<T>) - Static method in class com.hfg.util.CompareUtil
-
- compare(Collection<T>, Collection<T>) - Static method in class com.hfg.util.CompareUtil
-
- compare(Map<K, V>, Map<K, V>) - Static method in class com.hfg.util.CompareUtil
-
- compare(Color, Color) - Static method in class com.hfg.util.CompareUtil
-
- compare(byte[], byte[]) - Static method in class com.hfg.util.CompareUtil
-
- compare(Object, Object) - Method in class com.hfg.util.io.RemoteFileTimestampComparator
-
- compareAbs(int, int) - Static method in class com.hfg.math.NumUtil
-
Compares the absolute value of two ints.
- compareDocumentPosition(Node) - Method in class com.hfg.xml.XMLAttribute
-
- compareIgnoreCase(String, String) - Static method in class com.hfg.util.CompareUtil
-
- compareIgnoreCase(char, char) - Static method in class com.hfg.util.CompareUtil
-
- compareTo(AAGroup) - Method in class com.hfg.bio.AAGroup
-
- compareTo(AAGroupingScheme) - Method in class com.hfg.bio.AAGroupingSchemeImpl
-
- compareTo(Object) - Method in class com.hfg.bio.AminoAcid
-
- compareTo(DbXref) - Method in class com.hfg.bio.DbXref
-
- compareTo(Object) - Method in class com.hfg.bio.glyco.Glycan
-
- compareTo(Object) - Method in class com.hfg.bio.glyco.Monosaccharide
-
- compareTo(KaSet) - Method in class com.hfg.bio.KaSet
-
- compareTo(Object) - Method in class com.hfg.bio.Protease
-
- compareTo(AlignmentScoring) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- compareTo(PairwiseSeqAlignment) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- compareTo(PctId) - Method in class com.hfg.bio.seq.alignment.PctId
-
- compareTo(Clone) - Method in class com.hfg.bio.seq.Clone
-
- compareTo(Object) - Method in class com.hfg.bio.seq.Exon
-
- compareTo(Object) - Method in class com.hfg.bio.seq.format.feature.BasicSeqFeatureLocation
-
- compareTo(Object) - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- compareTo(Object) - Method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureLocation
-
- compareTo(GenBankReference) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- compareTo(Object) - Method in class com.hfg.bio.seq.Gene
-
- compareTo(GenomicAssemblyLevel) - Method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
Compares this object with the specified object for order.
- compareTo(GenomicAssemblyReleaseType) - Method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyReleaseType
-
Compares this object with the specified object for order.
- compareTo(GenomicAssemblyVersionStatus) - Method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus
-
Compares this object with the specified object for order.
- compareTo(GenomicRefSeqCategory) - Method in class com.hfg.bio.seq.genomic.assembly.GenomicRefSeqCategory
-
Compares this object with the specified object for order.
- compareTo(GenomicRepresentation) - Method in class com.hfg.bio.seq.genomic.assembly.GenomicRepresentation
-
Compares this object with the specified object for order.
- compareTo(NCBIGenomicAssemblyInfo) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
Compares this object with the specified object for order.
- compareTo(GenomicLocation) - Method in class com.hfg.bio.seq.GenomicLocation
-
- compareTo(Object) - Method in class com.hfg.bio.seq.NucleicAcid
-
- compareTo(Object) - Method in class com.hfg.bio.seq.Protein
-
- compareTo(Object) - Method in class com.hfg.bio.seq.ProteinXLink
-
- compareTo(Object) - Method in class com.hfg.bio.seq.ProteinXLinkType
-
- compareTo(TranslationFrame) - Method in class com.hfg.bio.seq.translation.TranslationFrame
-
- compareTo(Object) - Method in class com.hfg.bio.Strand
-
- compareTo(NCBITaxon) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- compareTo(NCBITaxonNodeRank) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- compareTo(Object) - Method in class com.hfg.chem.Atom
-
- compareTo(Charge) - Method in class com.hfg.chem.Charge
-
- compareTo(Object) - Method in class com.hfg.chem.CovalentBond
-
- compareTo(Element) - Method in class com.hfg.chem.Element
-
- compareTo(Object) - Method in class com.hfg.chem.ElementalComposition
-
- compareTo(IonizableGroup) - Method in class com.hfg.chem.IonizableGroup
-
- compareTo(Object) - Method in class com.hfg.chem.Molecule
-
- compareTo(Object) - Method in class com.hfg.citation.Journal
-
- compareTo(Object) - Method in class com.hfg.citation.ncbi.MeshHeading
-
- compareTo(Object) - Method in class com.hfg.citation.ncbi.MeshQualifier
-
- compareTo(Object) - Method in class com.hfg.graphics.ColorPaletteImpl
-
- compareTo(Object) - Method in class com.hfg.graphics.ColorScale
-
- compareTo(ColorSpec) - Method in class com.hfg.graphics.ColorSpec
-
- compareTo(Gene2D) - Method in class com.hfg.graphics.Gene2D
-
- compareTo(Object) - Method in class com.hfg.graphics.NonlinearColorScale
-
- compareTo(Colorist) - Method in class com.hfg.graphics.PaletteColorist
-
- compareTo(Colorist) - Method in class com.hfg.graphics.RangeColorist
-
- compareTo(Colorist) - Method in class com.hfg.graphics.ScaleColorist
-
- compareTo(Track) - Method in class com.hfg.graphics.Track
-
- compareTo(Track2D) - Method in class com.hfg.graphics.Track2D
-
- compareTo(Object) - Method in class com.hfg.html.attribute.HTMLColor
-
- compareTo(Object) - Method in class com.hfg.javascript.ext.ExtGridCol
-
Currently compares just dataIndex values or text if the dataIndex isn't set.
- compareTo(Counter) - Method in class com.hfg.math.Counter
-
- compareTo(IntRange) - Method in class com.hfg.math.IntRange
-
Deprecated.
- compareTo(Range<T>) - Method in class com.hfg.math.Range
-
- compareTo(RelationalOperator) - Method in class com.hfg.math.RelationalOperator
-
- compareTo(RomanNumeral) - Method in class com.hfg.math.RomanNumeral
-
Numerically compares two RomanNumeral objects.
- compareTo(RomanNumeralSymbol) - Method in class com.hfg.math.RomanNumeralSymbol
-
Numerically compares two RomanNumeralSymbol objects.
- compareTo(Edge) - Method in class com.hfg.network.Edge
-
- compareTo(Schema) - Method in class com.hfg.sql.jdbc.Schema
-
- compareTo(Object) - Method in class com.hfg.sql.SQLJoinType
-
- compareTo(DatabaseCol) - Method in class com.hfg.sql.table.DatabaseCol
-
- compareTo(DatabaseTable<T>) - Method in class com.hfg.sql.table.DatabaseTable
-
- compareTo(Object) - Method in class com.hfg.units.MeasurementSystem
-
- compareTo(Object) - Method in class com.hfg.units.Quantity
-
- compareTo(Object) - Method in class com.hfg.units.QuantityType
-
- compareTo(Object) - Method in class com.hfg.units.SI_ScalingFactor
-
- compareTo(Object) - Method in class com.hfg.units.SubUnit
-
- compareTo(Object) - Method in class com.hfg.units.Unit
-
- compareTo(List<SubUnit>) - Method in class com.hfg.units.Unit
-
- compareTo(Object) - Method in class com.hfg.util.collection.DataColumn
-
- compareTo(MatrixCell<RK, CK, V>) - Method in class com.hfg.util.collection.MatrixCell
-
- compareTo(OS) - Method in class com.hfg.util.OS
-
- compareTo(PrioritizedFutureTask<V>) - Method in class com.hfg.util.PrioritizedFutureTask
-
- compareTo(Object) - Method in class com.hfg.util.UserImpl
-
- compareTo(Doctype) - Method in class com.hfg.xml.Doctype
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.CellRange
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- compareTo(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlUnderlineType
-
- compareTo(XMLAttribute) - Method in class com.hfg.xml.XMLAttribute
-
XMLAttribute equality and comparison is based on the name.
- compareTo(Object) - Method in class com.hfg.xml.XMLTag
-
- compareTo(XsdElement) - Method in class com.hfg.xml.xsd.XsdElement
-
- CompareUtil - Class in com.hfg.util
-
Basic null-safe compare() methods.
- CompareUtil() - Constructor for class com.hfg.util.CompareUtil
-
- COMPARISON_LENGTH_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- compass - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- COMPBIAS - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- COMPLETE_GENOME - Static variable in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- COMPLETE_YN_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- COMPLETED - Static variable in class com.hfg.citation.ncbi.MedlineCitationStatus
-
- COMPLEX_CONTENT - Static variable in class com.hfg.xml.xsd.XsdXML
-
- COMPLEX_FIELD - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_FIELD_CHAR_TYPE_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_FIELD_LOCK_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_SCRIPT_BOLD - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_SCRIPT_FONT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- COMPLEX_SCRIPT_FONT_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_SCRIPT_FONT_SIZE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_SCRIPT_ITALICS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_SCRIPT_THEME_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- COMPLEX_TYPE - Static variable in class com.hfg.xml.xsd.XsdXML
-
- ComplexSetting - Class in com.hfg.setting
-
Custom XML-serializable settings.
- ComplexSetting(String) - Constructor for class com.hfg.setting.ComplexSetting
-
- ComplexSetting(String, Object) - Constructor for class com.hfg.setting.ComplexSetting
-
- ComplexSetting(ComplexSetting) - Constructor for class com.hfg.setting.ComplexSetting
-
Copy constructor.
- ComplexSetting(XMLTag) - Constructor for class com.hfg.setting.ComplexSetting
-
- COMPONENT_OPTIONS - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- ComponentTransferType - Enum in com.hfg.svg.filtereffect
-
Enumeration of SVG (Scalable Vector Graphics) filter effect 'feComponentTransfer' types.
- composeEndTag(String) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml end tag (ex: "</inName>").
- composeStartTag(String) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName>").
- composeStartTag(String, Attributes) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- composeStartTag(String, Attributes, boolean) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- composeStartTag(String, Collection<XMLAttribute>) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- composeStartTag(String, Collection<XMLAttribute>, boolean) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- composeStartTag(String, Map<String, Object>) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- composeStartTag(String, Map<String, Object>, boolean) - Static method in class com.hfg.xml.XMLUtil
-
Composes an xml start tag (ex: "<inName att1='value1' att2='value2'>").
- CompositingOperatorType - Enum in com.hfg.svg.filtereffect
-
Enumeration of SVG (Scalable Vector Graphics) filter effect 'feComposite' operator attribute values.
- COMPOUND_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- compress(byte[]) - Static method in class com.hfg.util.io.GZIP
-
- compress(byte[], int, int) - Static method in class com.hfg.util.io.GZIP
-
- compress(String) - Static method in class com.hfg.util.io.GZIP
-
- COMPRESSION_ATT - Static variable in class com.hfg.xml.XMLUtil
-
- CompressionException - Exception in com.hfg.exception
-
Indicates an exception caused during compression/decompression.
- CompressionException(String) - Constructor for exception com.hfg.exception.CompressionException
-
- CompressionException(String, Throwable) - Constructor for exception com.hfg.exception.CompressionException
-
- CompressionException(Throwable) - Constructor for exception com.hfg.exception.CompressionException
-
- compute(K, BiFunction<? super K, ? super V, ? extends V>) - Method in class com.hfg.util.collection.OrderedMap
-
- computeBaseSIValue(double) - Method in class com.hfg.units.Unit
-
- computeIfAbsent(K, Function<? super K, ? extends V>) - Method in class com.hfg.util.collection.OrderedMap
-
- computeIfPresent(K, BiFunction<? super K, ? super V, ? extends V>) - Method in class com.hfg.util.collection.OrderedMap
-
- computeLevenshteinDistance(CharSequence, CharSequence) - Static method in class com.hfg.util.StringUtil
-
Calculates the Levenshtein distance between two Strings.
- computeScaledValue(double, Map<QuantityType, SI_ScalingFactor>) - Method in class com.hfg.units.Unit
-
- computeUnitLabel(Map<QuantityType, SI_ScalingFactor>, boolean) - Method in class com.hfg.units.Unit
-
- computeValueFromBaseSIValue(double) - Method in class com.hfg.units.Unit
-
- CONCENTRATION - Static variable in class com.hfg.units.QuantityType
-
- ConcentrationUnit - Class in com.hfg.units
-
Enumeration of concentration types.
- ConcentrationUnit(List<SubUnit>) - Constructor for class com.hfg.units.ConcentrationUnit
-
- CONDENSE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CONDITIONAL_FORMATTING - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CONDITIONAL_FORMATTING_RULE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CONDITIONAL_FORMATTING_VALUE_OBJ - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CONDYLOSTOMA_NUCLEAR - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- confetti - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- confettiGrays - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- confettiOutline - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- confettiStreamers - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- confettiWhite - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- ConfigurationException - Exception in com.hfg.exception
-
Indicates that there are problems with object/component's configuration.
- ConfigurationException(String) - Constructor for exception com.hfg.exception.ConfigurationException
-
- ConfigurationException(String, Throwable) - Constructor for exception com.hfg.exception.ConfigurationException
-
- ConfigurationException(Throwable) - Constructor for exception com.hfg.exception.ConfigurationException
-
- configureStmt(Statement) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- conflict - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- CONFLICT - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- ConnectionMode - Enum in com.hfg.sql.jdbc
-
Represents modes for a RDBMS database connection.
- CONSRTM - Static variable in class com.hfg.bio.seq.format.genbank.GenBankSubkeyword
-
- CONSTRUCTED - Static variable in class com.hfg.bio.seq.format.EMBL_DataClass
-
Constructed CON
- CONSTRUCTED - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Constructed sequences
- constructFromXMLNode(XMLNode) - Static method in class com.hfg.html.HTML
-
- constructFromXMLTag(XMLTag) - Static method in class com.hfg.svg.SVG
-
- constructFromXMLTag(XMLTag) - Static method in class com.hfg.xml.dublincore.DublinCore
-
- constructIonizableGroupMap(Protein, S) - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- constructTree(DistanceMatrix) - Method in class com.hfg.bio.phylogeny.NJ
-
- constructTree(DistanceMatrix) - Method in interface com.hfg.bio.phylogeny.TreeMethod
-
- constructTree(DistanceMatrix) - Method in class com.hfg.bio.phylogeny.UPGMA
-
- contains(Character) - Method in class com.hfg.bio.AAGroup
-
- contains(AminoAcid) - Method in class com.hfg.bio.AAGroup
-
- contains(Object) - Method in class com.hfg.bio.AminoAcidSet
-
- contains(char) - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
Returns whether or not this substitution matrix supports the specified character.
- contains(int) - Method in class com.hfg.math.IntRange
-
Deprecated.
- contains(IntRange) - Method in class com.hfg.math.IntRange
-
Deprecated.
- contains(Number) - Method in class com.hfg.math.Range
-
- contains(int) - Method in class com.hfg.math.Range
-
- contains(float) - Method in class com.hfg.math.Range
-
- contains(double) - Method in class com.hfg.math.Range
-
- contains(Range<T>) - Method in class com.hfg.math.Range
-
- contains(Object) - Method in class com.hfg.xml.XMLAttributeMap
-
- containsAll(Collection<?>) - Method in class com.hfg.bio.AminoAcidSet
-
- containsAll(Collection<?>) - Method in class com.hfg.xml.XMLAttributeMap
-
- containsCodonUsageData() - Method in class com.hfg.bio.seq.translation.CodonTable
-
- containsCol(CK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- containsDegenerateBases() - Method in class com.hfg.bio.seq.translation.Codon
-
- containsGaps() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- containsKey(K) - Method in class com.hfg.util.collection.SymmetricMatrix
-
- containsLowerCase(String) - Static method in class com.hfg.util.StringUtil
-
Returns whether or not the specified string contains a lower-case letter.
- containsMismatchRestrictions() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- containsPositionAmbiguity() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- containsRanges() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- containsRow(RK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- containsUpperCase(String) - Static method in class com.hfg.util.StringUtil
-
Returns whether or not the specified string contains an upper-case letter.
- containsValue(Object) - Method in class com.hfg.util.collection.BiHashMap
-
- content - Static variable in class com.hfg.css.CSSProperty
-
- CONTENT - Static variable in class com.hfg.html.HTML
-
- CONTENT_TYPE_ATT - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CONTENT_TYPE_ISO_8859_1 - Static variable in class com.hfg.html.Meta
-
- CONTENT_TYPES_FILE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CONTENT_TYPES_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- ContentTypesPart - Class in com.hfg.xml.msofficexml.part
-
Represents an Office Open XML content types part.
- ContentTypesPart(OfficeOpenXmlDocument) - Constructor for class com.hfg.xml.msofficexml.part.ContentTypesPart
-
- CONTEXTUAL_SPACING - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- CONTIG - Static variable in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- CONTIG - Static variable in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- CONTIG_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- CONTIG_ATTR - Static variable in class com.hfg.bio.seq.format.GenBank
-
- CONTIG_LENGTH_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- ContigAssembler - Class in com.hfg.bio.seq.alignment.assembler
-
Tool for assembling reads into contigs.
- ContigAssembler() - Constructor for class com.hfg.bio.seq.alignment.assembler.ContigAssembler
-
- ContigAssemblerResults - Class in com.hfg.bio.seq.alignment.assembler
-
- ContigAssemblerResults() - Constructor for class com.hfg.bio.seq.alignment.assembler.ContigAssemblerResults
-
- ContigPlot - Class in com.hfg.bio.seq.graphics
-
Visualization of genes on a contig.
- ContigPlot(String, int) - Constructor for class com.hfg.bio.seq.graphics.ContigPlot
-
- CONTINUE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlVerticalMerge
-
- ContrastingColorPalette - Class in com.hfg.graphics
-
A set of 26 high contrast colors.
- ContrastingColorPalette() - Constructor for class com.hfg.graphics.ContrastingColorPalette
-
- convert(HTMLTag, Docx) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.HtmlToWmlConverter
-
Warning: this method is still a brittle work-in-progress.
- convertCharacterEntitiesToNumeric(String) - Static method in class com.hfg.xml.XMLUtil
-
- convertCharacterEntitiesToUnicode(String) - Static method in class com.hfg.xml.XMLUtil
-
- convertGeneralizedTimestamp(String) - Static method in class com.hfg.ldap.ad.ActiveDirectory
-
Converts an LDAP-specific generalized timestamp "YYYYMMDDHHMMSS.0Z"(ex: '20190104204258.0Z').
- convertImage(File, File, float) - Static method in class com.hfg.image.ImageIO_Util
-
- convertImage(File, File) - Method in class com.hfg.image.ImageMagick
-
- convertPixelsToDxa(int) - Static method in class com.hfg.xml.msofficexml.docx.DocxUtil
-
Converts the value to Dxa (twentieths of a point).
- convertSeparatorsToUnix(String) - Static method in class com.hfg.util.FileUtil
-
Converts file path directory separators to the Unix separator '/'.
- convertStringToRegExp(String) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- convertStringValueToObject(String) - Static method in class com.hfg.javascript.JSONUtil
-
- convertTo(LengthUnit) - Method in class com.hfg.units.length.Length
-
Returns the length in the specified units.
- convertTo(Unit) - Method in class com.hfg.units.Quantity
-
- convertToDate(LocalDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- convertToLocalDateTime(Date) - Static method in class com.hfg.datetime.DateUtil
-
- convertToLocalDateTime(Instant) - Static method in class com.hfg.datetime.DateUtil
-
- convertToUTCZonedDateTime(Instant) - Static method in class com.hfg.datetime.DateUtil
-
- convertToZonedDateTime(Date) - Static method in class com.hfg.datetime.DateUtil
-
- convertToZonedDateTime(Instant) - Static method in class com.hfg.datetime.DateUtil
-
- convertWin32EpochTimestamp(String) - Static method in class com.hfg.ldap.ad.ActiveDirectory
-
Converts Active Directory timestamps used for pwdLastSet, accountExpires, LastLogon, LastLogonTimestamp and LastPwdSet.
- cookieNeedsEncoding(Cookie) - Static method in class com.hfg.webapp.WebappUtil
-
Trys to determine if the cookie value needs to be encoded according to section 4.1.1 of RFC 6265.
- COORDS - Static variable in class com.hfg.html.HTML
-
- COPERNICIUM - Static variable in class com.hfg.chem.Element
-
- COPPER - Static variable in class com.hfg.chem.Element
-
- copy(File, File) - Static method in class com.hfg.util.FileUtil
-
Copies the specified file to the specified target.
- copyArea(int, int, int, int, int, int) - Method in class com.hfg.graphics.SvgGraphics2D
-
- copyDirContents(File, File) - Static method in class com.hfg.util.FileUtil
-
Recursively copies all files and directories within the src directory into the target dir.
- copyLocallyPreservingPath(File) - Method in class com.hfg.util.io.AbstractRemoteFile
-
- copyLocallyPreservingPath(File) - Method in class com.hfg.util.io.HTTPRemoteFile
-
- copyLocallyPreservingPath(File) - Method in interface com.hfg.util.io.RemoteFile
-
Copies the remote file to the specified local root dir plus the file's remote path.
- CopyMode - Enum in com.hfg.util
-
Enumeration of values for how a copy or clone should be done.
- CORAL - Static variable in class com.hfg.html.attribute.HTMLColor
-
(255, 127, 80)
- CORE_PROP_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CORE_PROPERTIES - Static variable in class com.hfg.xml.msofficexml.OfficeOpenXMLContentType
-
- CORE_PROPERTIES - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- CORE_PROPERTIES - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- CORE_PROPERTIES_FILE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- cornerTriangles - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CORNFLOWER_BLUE - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- CORNFLOWER_BLUE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(100, 149, 237)
- CORNSILK - Static variable in class com.hfg.html.attribute.HTMLColor
-
(255, 248, 220)
- COUNT_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- Counter - Class in com.hfg.math
-
Simple count container useful in Maps.
- Counter() - Constructor for class com.hfg.math.Counter
-
- counter_increment - Static variable in class com.hfg.css.CSSProperty
-
- counter_reset - Static variable in class com.hfg.css.CSSProperty
-
- countGaps() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- countGaps() - Method in class com.hfg.bio.seq.Protein
-
- countOfCombinationsWithRepetition(List<?>, int) - Static method in class com.hfg.math.Combinations
-
- country - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- COUNTRY - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- COUNTRY_CODE - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- COUNTRY_CODE - Static variable in class com.hfg.ldap.LDAP_Field
-
- couponCutoutDashes - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- couponCutoutDots - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CovalentBond - Class in com.hfg.chem
-
Represents a covalent bond between atoms.
- CovalentBond(Atom, int) - Constructor for class com.hfg.chem.CovalentBond
-
- CovalentBond(Atom, Atom) - Constructor for class com.hfg.chem.CovalentBond
-
- CovalentBond(Atom, Integer, Atom) - Constructor for class com.hfg.chem.CovalentBond
-
- crazyMaze - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- create() - Method in class com.hfg.graphics.SvgGraphics2D
-
- createArrayOf(String, Object[]) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createBlob() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createClob() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createConnection() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- createConnection() - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQLConnectionPool
-
- CREATED - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- createMatch(String, SeqLocation) - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- createMatch(String, SeqLocation) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- createMatch(String, SeqLocation) - Method in class com.hfg.bio.seq.pattern.ProteinPattern
-
- createMatch(String, SeqLocation) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- createMoleculeObj() - Method in interface com.hfg.chem.format.MoleculeFactory
-
- createMoleculeObj() - Method in class com.hfg.chem.format.MoleculeFactoryImpl
-
- createNClob() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createNTerminalPyroGlu() - Method in class com.hfg.bio.seq.Protein
-
Convenience method for setting the N-terminal group as pyro-glu based on
whether the N-terminal residue is Glu or Gln.
- createSeqObj() - Method in interface com.hfg.bio.seq.BioSequenceFactory
-
- createSeqObj() - Method in class com.hfg.bio.seq.NucleicAcidFactory
-
- createSeqObj() - Method in class com.hfg.bio.seq.ProteinFactory
-
- createSQLXML() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createStatement() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createStatement(int, int) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createStatement(int, int, int) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createStruct(String, Object[]) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- createUserObj() - Method in class com.hfg.ldap.ad.ActiveDirectoryUserFactory
-
- createUserObj() - Method in class com.hfg.ldap.LDAP_UserFactory
-
- createUserObj() - Method in interface com.hfg.ldap.LDAP_UserObjFactory
-
- createUserObjFromBrowserSessionCookie(HfgCookie) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- CREATIVE_COMMONS_NAMESPACE - Static variable in class com.hfg.xml.creativecommons.CreativeCommons
-
- CreativeCommons - Class in com.hfg.xml.creativecommons
-
Creative Commons tags for RDF.
- CreativeCommons() - Constructor for class com.hfg.xml.creativecommons.CreativeCommons
-
- CreativeCommons_Work - Class in com.hfg.xml.creativecommons
-
Object representation of the Creative Commons 'Work' tag.
- CreativeCommons_Work() - Constructor for class com.hfg.xml.creativecommons.CreativeCommons_Work
-
- CreativeCommons_Work(XMLTag) - Constructor for class com.hfg.xml.creativecommons.CreativeCommons_Work
-
- CREATOR - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- creaturesButterfly - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- creaturesFish - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- creaturesInsects - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- creaturesLadyBug - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CredentialsMgr - Class in com.hfg.security
-
Simple login store to keep passwords out of the source code.
- CredentialsMgr() - Constructor for class com.hfg.security.CredentialsMgr
-
- CredentialsMgr(File) - Constructor for class com.hfg.security.CredentialsMgr
-
- CRICETULUS_GRISEUS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Hamster
- cRNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- CronSchedule - Class in com.hfg.util.scheduler
-
Scheduler that uses the same specification syntax as the Unix cron utility.
- CronSchedule(String) - Constructor for class com.hfg.util.scheduler.CronSchedule
-
- crop - Static variable in class com.hfg.css.CSSProperty
-
- CROSS_JOIN - Static variable in class com.hfg.sql.SQLJoinType
-
Cartesian product (every possible combination) of rows from TABLE1 and TABLE2.
- CROSSLNK - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- crossStitch - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CryptoUtil - Class in com.hfg.util
-
Cryptology-related methods for key & signature handling.
- CryptoUtil() - Constructor for class com.hfg.util.CryptoUtil
-
- CSL - Class in com.hfg.citation
-
Citation Style Language (CSL).
- CSL() - Constructor for class com.hfg.citation.CSL
-
- CspCI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- CSS - Class in com.hfg.css
-
Class to define some css style shortcuts.
- CSS() - Constructor for class com.hfg.css.CSS
-
- CSS(Reader) - Constructor for class com.hfg.css.CSS
-
Parses CSS text into rules.
- CSS_1 - Static variable in class com.hfg.css.CSSLevel
-
- CSS_2 - Static variable in class com.hfg.css.CSSLevel
-
- CSS_2_1 - Static variable in class com.hfg.css.CSSLevel
-
- CSS_3 - Static variable in class com.hfg.css.CSSLevel
-
- CSSBorderStyle - Class in com.hfg.css
-
- CSSDeclaration - Class in com.hfg.css
-
A CSS declaration container composed of a CSSProperty and a value.
- CSSDeclaration(CSSProperty, int) - Constructor for class com.hfg.css.CSSDeclaration
-
- CSSDeclaration(CSSProperty, String) - Constructor for class com.hfg.css.CSSDeclaration
-
- CSSDisplayValue - Enum in com.hfg.css
-
Valid CSS values for the display property.
- CSSException - Exception in com.hfg.css
-
Indicates an exception in the CSS structure.
- CSSException(String) - Constructor for exception com.hfg.css.CSSException
-
- CSSException(String, Throwable) - Constructor for exception com.hfg.css.CSSException
-
- CSSException(Throwable) - Constructor for exception com.hfg.css.CSSException
-
- CSSLevel - Class in com.hfg.css
-
- CSSMediaQuery - Class in com.hfg.css
-
Class to encapsulate a CSS media query.
- CSSMediaQuery() - Constructor for class com.hfg.css.CSSMediaQuery
-
- CSSMediaQuery(String) - Constructor for class com.hfg.css.CSSMediaQuery
-
- CSSMediaQuery.Flag - Enum in com.hfg.css
-
- CSSMediaType - Enum in com.hfg.css
-
- CSSProperty - Class in com.hfg.css
-
Enumeration of valid CSS property names.
- CSSRule - Class in com.hfg.css
-
CSS Rule encapsulation.
- CSSRule() - Constructor for class com.hfg.css.CSSRule
-
- CSSRule(String) - Constructor for class com.hfg.css.CSSRule
-
- CSSRule(List<CSSSelector>, List<CSSDeclaration>) - Constructor for class com.hfg.css.CSSRule
-
- CSSSelector - Class in com.hfg.css
-
CSS selector encapsulation.
- CSSSelector(String) - Constructor for class com.hfg.css.CSSSelector
-
- CssUtil - Class in com.hfg.css
-
Contains CSS-related utility functions.
- CssUtil() - Constructor for class com.hfg.css.CssUtil
-
- CSV - Class in com.hfg.util.io
-
Utility to help in parsing CSV (comma-separated value) files.
- CSV() - Constructor for class com.hfg.util.io.CSV
-
- CTERM_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- CTerminalGroup - Class in com.hfg.bio
-
C-terminal protein group.
- CTerminalGroup(String) - Constructor for class com.hfg.bio.CTerminalGroup
-
- CTerminalGroup(String, Map) - Constructor for class com.hfg.bio.CTerminalGroup
-
- CTerminalGroup(XMLNode) - Constructor for class com.hfg.bio.CTerminalGroup
-
- cue - Static variable in class com.hfg.css.CSSProperty
-
- cue_after - Static variable in class com.hfg.css.CSSProperty
-
- cue_before - Static variable in class com.hfg.css.CSSProperty
-
- cultivar - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- culture_collection - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- cup - Static variable in class com.hfg.units.VolumeUnit
-
- cup - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- CURIUM - Static variable in class com.hfg.chem.Element
-
- Currency - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- cursor - Static variable in class com.hfg.css.CSSProperty
-
- CUSTOM_BUILTIN_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CUSTOM_DASH - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- CUSTOM_HEIGHT_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CUSTOM_WIDTH_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- CviAII - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- CviKI_1 - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- CviQI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- cx - Static variable in class com.hfg.svg.SvgAttr
-
- CX_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- CX_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- cy - Static variable in class com.hfg.svg.SvgAttr
-
- CY_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- CY_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- CYAN - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 0, 255, 255)
- CYS_2_HYDROXYETHYL_THIOCYSTEINE - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_ACETAMIDOMETHYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_AMINOETHYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_CARBAMIDOMETHYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_CARBOXYMETHYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_PYRIDYLETHYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_S_DIOXIDE - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_S_FARNESYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_S_HYDROXY - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_S_PALMITYL - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_S_PHOSPHO - Static variable in class com.hfg.bio.AminoAcid
-
- CYS_SULFONIC_ACID - Static variable in class com.hfg.bio.AminoAcid
-
- CYSTEINE - Static variable in class com.hfg.bio.AminoAcid
-
- CYTOSINE - Static variable in class com.hfg.bio.Nucleotide
-
- GADOLINIUM - Static variable in class com.hfg.chem.Element
-
- GAINSBORO - Static variable in class com.hfg.html.attribute.HTMLColor
-
(220, 220, 220)
- Galactose - Static variable in class com.hfg.bio.glyco.Monosaccharide
-
- GALLIUM - Static variable in class com.hfg.chem.Element
-
- gallon - Static variable in class com.hfg.units.VolumeUnit
-
- GalNAc - Static variable in class com.hfg.bio.glyco.Monosaccharide
-
- ganada - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- gap - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- GAP_PATTERN - Static variable in class com.hfg.bio.seq.BioSequenceImpl
-
- gap_type - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- GapPenalties - Class in com.hfg.bio.seq.alignment
-
Container for pairwise sequence alignment gap penalties.
- GapPenalties() - Constructor for class com.hfg.bio.seq.alignment.GapPenalties
-
- GC_signal - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- geLdapCertificates(String) - Static method in class com.hfg.cert.CertificateUtil
-
- gems - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- GenBank<T extends BioSequence> - Class in com.hfg.bio.seq.format
-
GenBank sequence format.
- GenBank(BioSequenceFactory<T>) - Constructor for class com.hfg.bio.seq.format.GenBank
-
- GENBANK_ACRONYM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- GENBANK_ANAMORPH - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- GENBANK_COMMON_NAME - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- GENBANK_SYNONYM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- GenBankFeature - Class in com.hfg.bio.seq.format.feature.genbank
-
- GenBankFeature(GenBankFeatureKey, GenBankFeatureLocation) - Constructor for class com.hfg.bio.seq.format.feature.genbank.GenBankFeature
-
- GenBankFeatureKey - Class in com.hfg.bio.seq.format.feature.genbank
-
DDBJ/EMBL/GenBank feature table keys for flat-file records.
- GenBankFeatureLocation - Class in com.hfg.bio.seq.format.feature.genbank
-
GenBank feature location.
- GenBankFeatureLocation(String) - Constructor for class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- GenBankFeatureQualifier - Class in com.hfg.bio.seq.format.feature.genbank
-
DDBJ/EMBL/GenBank feature table qualifier for flat-file records.
- GenBankFeatureQualifier(GenBankFeatureQualifierName) - Constructor for class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifier
-
- GenBankFeatureQualifier(GenBankFeatureQualifierName, String) - Constructor for class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifier
-
- GenBankFeatureQualifierName - Class in com.hfg.bio.seq.format.feature.genbank
-
DDBJ/EMBL/GenBank feature table qualifiers for flat-file records.
- GenBankKeyword - Class in com.hfg.bio.seq.format.genbank
-
Valid keywords for the GenBank sequence format.
- GenBankKeyword(String) - Constructor for class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- GenBankReference - Class in com.hfg.bio.seq.format.genbank
-
Literature citation container.
- GenBankReference() - Constructor for class com.hfg.bio.seq.format.genbank.GenBankReference
-
- GenBankSubkeyword - Class in com.hfg.bio.seq.format.genbank
-
- GenBankSubkeyword(String) - Constructor for class com.hfg.bio.seq.format.genbank.GenBankSubkeyword
-
- gene - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- gene - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- Gene - Class in com.hfg.bio.seq
-
A gene representation.
- Gene() - Constructor for class com.hfg.bio.seq.Gene
-
- Gene2D - Class in com.hfg.graphics
-
Simple 2D representation of a gene.
- Gene2D() - Constructor for class com.hfg.graphics.Gene2D
-
- gene_synonym - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- General - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- GENERAL - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- GeneralDate - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- GeneralNumber - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- generate(Value) - Method in class com.hfg.graphics.DataStylistGenerator
-
- generate(int) - Method in class com.hfg.graphics.DataStylistGenerator
-
- generate(long) - Method in class com.hfg.graphics.DataStylistGenerator
-
- generate(float) - Method in class com.hfg.graphics.DataStylistGenerator
-
- generate(double) - Method in class com.hfg.graphics.DataStylistGenerator
-
- generate(List<MimeEntity>, OutputStream) - Method in class com.hfg.util.mime.MultipartMimeGenerator
-
- generateAsDocx(Citation, WmlXMLTag) - Method in class com.hfg.citation.APA
-
- generateAsDocx(Citation, WmlXMLTag) - Method in class com.hfg.citation.Chicago
-
- generateAsDocx(Citation, WmlXMLTag) - Method in interface com.hfg.citation.CitationFormat
-
- generateAsDocx(Citation, WmlXMLTag) - Method in class com.hfg.citation.MLA
-
- generateAsHTML(Citation) - Method in class com.hfg.citation.APA
-
- generateAsHTML(Citation) - Method in class com.hfg.citation.Chicago
-
- generateAsHTML(Citation) - Method in interface com.hfg.citation.CitationFormat
-
- generateAsHTML(Citation) - Method in class com.hfg.citation.MLA
-
- generateAsString(Citation) - Method in class com.hfg.citation.APA
-
- generateAsString(Citation) - Method in class com.hfg.citation.Chicago
-
- generateAsString(Citation) - Method in interface com.hfg.citation.CitationFormat
-
- generateAsString(Citation) - Method in class com.hfg.citation.MLA
-
- generateAuthUsernameCookie(String, String) - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- generateBookmarkEnd() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlBookmark
-
- generateBookmarkStart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlBookmark
-
- generateBrowserDetectionJS() - Static method in class com.hfg.javascript.CommonJS
-
- generateBrowserSessionCookie(UserImpl) - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- generateCertSummary(X509Certificate) - Static method in class com.hfg.cert.CertificateUtil
-
- generateCommonCSS() - Static method in class com.hfg.javascript.PopupMenuJS
-
- generateCommonJavascript() - Static method in class com.hfg.javascript.PopupMenuJS
-
Generates the generic javascript methods for creating a popup menu.
- generateCSS() - Static method in class com.hfg.html.custom.MultiSelectExpander
-
- generateCSS() - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- generateCSS() - Static method in class com.hfg.html.custom.TextareaExpander
-
- generateCSS() - Method in class com.hfg.javascript.HoverboardMaker
-
- generateCurlyBracket(Point2D, Point2D, int) - Static method in class com.hfg.svg.SvgPath
-
Generates the path for a curly brace between two specified points.
- generateDefaultStyles(Docx) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- generateDefaultStyles(Docx) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlNumberingStyle
-
- generateDefaultStyles(Docx) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- generateDefaultStyles(Docx) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyle
-
- generateDefaultValues(Docx) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlAbstractNumbering
-
- generateDomSearchJS() - Static method in class com.hfg.javascript.CommonJS
-
- generateDrawingMLId() - Static method in class com.hfg.xml.msofficexml.docx.drawingml.DrawingML
-
- generateDSAKeyPair(File) - Static method in class com.hfg.security.DSAUtil
-
- generateElapsedTimeString(long) - Static method in class com.hfg.datetime.DateUtil
-
- generateElapsedTimeString(long, long) - Static method in class com.hfg.datetime.DateUtil
-
- generateEllipticCurveKeyPair() - Static method in class com.hfg.util.CryptoUtil
-
Generates an Elliptic Curve key pair using the default elliptic curve spec.
- generateEllipticCurveKeyPair(String) - Static method in class com.hfg.util.CryptoUtil
-
Generates an Elliptic Curve key pair.
- generateId() - Method in class com.hfg.xml.msofficexml.part.OfficeOpenXmlRelationshipPart
-
- generateJavascript() - Static method in class com.hfg.html.custom.MultiSelectExpander
-
- generateJavascript() - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- generateJavascript() - Static method in class com.hfg.html.custom.TextareaExpander
-
- generateJavascript() - Static method in class com.hfg.javascript.HfgPopupMenu
-
Generates the generic javascript methods for creating a popup menu.
- generateJS() - Method in class com.hfg.javascript.HoverboardMaker
-
- generateJS() - Method in class com.hfg.javascript.TooltipJS
-
- generateJSON(Citation) - Static method in class com.hfg.citation.CSL
-
Converts a citation into CSL json format.
- generateKMerDistanceMatrix(List<? extends BioSequence>, int) - Method in class com.hfg.bio.seq.alignment.KMerSimilarity
-
- generateLocalizedNumberString(Number) - Static method in class com.hfg.util.StringUtil
-
- generateLocalizedNumberString(Number, Locale) - Static method in class com.hfg.util.StringUtil
-
- generateMenuJavascript() - Method in class com.hfg.javascript.PopupMenuJS
-
- generateOnLoad() - Method in class com.hfg.html.custom.TabbedPaneSet
-
Createds the javascript for the body's onload() that is necessary to
initialize the tabbed pane set (and any tabbed pane sets contained within it).
- generateOrderByClause() - Method in class com.hfg.sql.SQLCmd
-
- generatePage_X_of_Y() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlFooter
-
- generateRandomEgyptianHieroglyphics(int) - Static method in class com.hfg.util.StringUtil
-
- generateRandomString(CharSequence, int) - Static method in class com.hfg.util.StringUtil
-
Returns a random string of the specified length using the specified alphabet of characters.
- generateRandomString(Character.UnicodeScript, int) - Static method in class com.hfg.util.StringUtil
-
- generateSignatureWithECDSA(PrivateKey, String) - Static method in class com.hfg.util.CryptoUtil
-
Generates a signature give a private key and the text to sign.
- generateSvgJavascript() - Static method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- generateUID() - Static method in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
- generateWhereClause() - Method in class com.hfg.sql.SQLCmd
-
- generateXAxis() - Method in class com.hfg.bio.seq.graphics.ContigPlot
-
- generateXMLHttpRequestJS() - Static method in class com.hfg.javascript.CommonJS
-
- genomic_DNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- GENOMIC_LOC_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- genomic_RNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- GenomicAssemblyLevel - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic assembly levels.
- GenomicAssemblyReleaseType - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic assembly release types.
- GenomicAssemblyVersionStatus - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic assembly version status values.
- GenomicLocation - Class in com.hfg.bio.seq
-
Genomic location.
- GenomicLocation() - Constructor for class com.hfg.bio.seq.GenomicLocation
-
- GenomicLocation(String) - Constructor for class com.hfg.bio.seq.GenomicLocation
-
- GenomicLocation(XMLTag) - Constructor for class com.hfg.bio.seq.GenomicLocation
-
- GenomicPairedAssemblyComparison - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic paired assembly comparison types.
- GenomicRefSeqCategory - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic RefSeq categories.
- GenomicRelationToTypeMaterial - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of relationships to type materials.
- GenomicRepresentation - Class in com.hfg.bio.seq.genomic.assembly
-
Enumeration of genomic representation values.
- GENOTYPE - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- GENUS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- GERMANIUM - Static variable in class com.hfg.chem.Element
-
- germline - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- get(AminoAcid) - Method in class com.hfg.bio.AminoAcidFreqTable
-
- get(AminoAcid) - Method in class com.hfg.bio.seq.AminoAcidComposition
-
- get(Element) - Method in class com.hfg.chem.ElementalComposition
-
- get(String) - Method in class com.hfg.security.CredentialsMgr
-
- get(String) - Method in class com.hfg.setting.Settings
-
- get(RK, CK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- get(K, K) - Method in class com.hfg.util.collection.SymmetricMatrix
-
- get1904BasedDates() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- get1ByteInt(byte[], int) - Static method in class com.hfg.util.ByteUtil
-
Returns a 1-byte int from the given byte array.
- get2ByteInt(byte[]) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given byte array.
- get2ByteInt(byte[], ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given byte[].
- get2ByteInt(byte[], int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given byte[].
- get2ByteInt(InputStream) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given InputStream.
- get2ByteInt(InputStream, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given InputStream.
- get2ByteInt(RandomAccessFile, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the current position of the specified RandomAccessFile.
- get2ByteInt(ByteSource, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the current position of the specified ByteSource.
- get2ByteInt(byte[], int) - Static method in class com.hfg.util.ByteUtil
-
Returns a 2-byte int from the given byte array.
- get2DigitYearStart() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- get3Prime() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- get4bitBytes(byte) - Static method in class com.hfg.util.ByteUtil
-
Decomposes a byte (8-bits) into two 4-bit bytes.
- get5Prime() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- getAA(char) - Method in class com.hfg.bio.AminoAcidSet
-
- getAA(Character) - Method in class com.hfg.bio.AminoAcidSet
-
- getAA() - Method in class com.hfg.bio.seq.translation.Codon
-
- getAAGroup(AminoAcid) - Method in interface com.hfg.bio.AAGroupingScheme
-
- getAAGroup(Character) - Method in interface com.hfg.bio.AAGroupingScheme
-
- getAAGroup(AminoAcid) - Method in class com.hfg.bio.AAGroupingSchemeImpl
-
- getAAGroup(Character) - Method in class com.hfg.bio.AAGroupingSchemeImpl
-
- getAAGroups() - Method in interface com.hfg.bio.AAGroupingScheme
-
- getAAGroups() - Method in class com.hfg.bio.AAGroupingSchemeImpl
-
- getAbbrev() - Method in class com.hfg.bio.glyco.Glycan
-
- getAbbrev() - Method in class com.hfg.bio.glyco.Monosaccharide
-
- getAbbrev() - Method in enum com.hfg.bio.seq.BioSequenceType
-
- getAbbrev() - Method in enum com.hfg.bio.seq.NucleotideEnd
-
- getAbbrev() - Method in class com.hfg.citation.Journal
-
- getAbbrev() - Method in class com.hfg.units.MeasurementSystem
-
- getAbbrev() - Method in class com.hfg.units.Unit
-
- getABIF_FormatVersionNum() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getAbstract() - Method in class com.hfg.citation.Citation
-
- getAcceptorChainId() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getAcceptorPosition() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getAcceptorSpliceSite() - Method in class com.hfg.bio.seq.genomic.Intron
-
- getAccessDate() - Method in class com.hfg.citation.Citation
-
- getAction() - Method in class com.hfg.html.Form
-
- getActivePane() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Returns the active portion of the pane.
- getActualQuantity() - Method in class com.hfg.chem.solution.AqueousSolution
-
- getAdjustedComparisonLength() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
Doesn't penalize sequence's terminal gaps.
- getAdjustedComparisonLength() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
Doesn't penalize sequence's terminal gaps.
- getAdjustedFont(Font) - Method in class com.hfg.svg.AbstractSvgNode
-
- getAdjustedPctIdentity() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
Doesn't penalize sequence's terminal gaps.
- getAdjustedPctIdentity() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
Doesn't penalize sequence's terminal gaps.
- getAlias() - Method in class com.hfg.sql.table.DatabaseCol
-
- getAlias() - Method in class com.hfg.sql.table.DatabaseTable
-
- getAlign() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getAlignedQuery() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getAlignedSeq() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getAlignedSubject() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getAlignLeaftNodeLabels() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getAlignment() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getAlignment() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getAlignment() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getAlkylatedCys() - Method in class com.hfg.bio.DigestSettings
-
- getAlkylatedCysteine() - Method in class com.hfg.bio.proteinproperty.ReducedAnalysisMode
-
- getAll() - Method in class com.hfg.math.ListCombinationIterator
-
- getAllNodes() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getAllNodesOrderedByDistance() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getAllowBlank() - Method in class com.hfg.javascript.ext.ExtModelField
-
- getAllowedUserDomains() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getAllowNull() - Method in class com.hfg.javascript.ext.ExtModelField
-
- getAllowPartialPathMatches() - Method in class com.hfg.webapp.ServletRequestDispatcher
-
- getAllThreadGroups() - Static method in class com.hfg.util.ThreadUtil
-
- getAlt() - Method in class com.hfg.html.Img
-
- getAlternateNames() - Method in class com.hfg.units.Unit
-
- getAlternateSymbols() - Method in class com.hfg.units.SI_ScalingFactor
-
- getAminoAcidComposition() - Method in class com.hfg.bio.seq.Protein
-
Returns a Map containing the amino acid composition of the protein including any subchains.
- getAminoAcids() - Method in class com.hfg.bio.AAGroup
-
- getAminoAcids() - Method in class com.hfg.bio.AminoAcidSet
-
- getAminoAcidSet() - Method in class com.hfg.bio.seq.Protein
-
- getAngle() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getAnnotation() - Method in class com.hfg.xml.xsd.XsdElement
-
- getAnnotation() - Method in class com.hfg.xml.xsd.XsdType
-
- getAnonymousFTP_Credentials() - Static method in class com.hfg.util.TestUtil
-
- getApplicants() - Method in class com.hfg.citation.PatentData
-
- getAppName() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getArray(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as an Array object
in the Java programming language.
- getArray(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as an Array object
in the Java programming language.
- getArray() - Method in class com.hfg.sql.table.field.SQLArray
-
- getArray(Map<String, Class<?>>) - Method in class com.hfg.sql.table.field.SQLArray
-
- getArray(long, int) - Method in class com.hfg.sql.table.field.SQLArray
-
- getArray(long, int, Map<String, Class<?>>) - Method in class com.hfg.sql.table.field.SQLArray
-
- getArticleNumber() - Method in class com.hfg.citation.Citation
-
- getAsciiStream(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a stream of ASCII characters.
- getAsciiStream(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a stream of
ASCII characters.
- getAssembly() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getAssemblyAccession() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getAssemblyLevel() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getAssemblyName() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getAssemblyReleaseType() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getAssemblyVersionStatus() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getAssignGroupsToSingletons() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getAsyncContext() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getAtomClass() - Method in class com.hfg.chem.Atom
-
- getAtomicNum() - Method in class com.hfg.chem.Element
-
- getAtoms() - Method in class com.hfg.chem.Molecule
-
- getAttribute(String) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getAttribute(String) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getAttribute(String) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getAttribute(String) - Method in interface com.hfg.bio.seq.BioSequence
-
- getAttribute(String) - Method in class com.hfg.chem.Molecule
-
- getAttribute(String) - Method in class com.hfg.util.AttributeMgr
-
- getAttribute(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getAttribute(String) - Method in interface com.hfg.xml.XMLNode
-
- getAttribute(XMLName) - Method in interface com.hfg.xml.XMLNode
-
- getAttribute(XMLName) - Method in class com.hfg.xml.XMLTag
-
- getAttribute(String) - Method in class com.hfg.xml.XMLTag
-
- getAttributeMgr() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getAttributeNames() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getAttributeNames() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getAttributeNames() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getAttributeNames() - Method in interface com.hfg.bio.seq.BioSequence
-
- getAttributeNames() - Method in class com.hfg.chem.Molecule
-
- getAttributeNames() - Method in class com.hfg.util.AttributeMgr
-
- getAttributeNames() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getAttributes() - Method in class com.hfg.xml.XMLAttribute
-
- getAttributes() - Method in interface com.hfg.xml.XMLNode
-
Returns a Set of XMLAttribute objects.
- getAttributes() - Method in class com.hfg.xml.XMLTag
-
Returns a Collection of XMLAttribute objects.
- getAttributeValue(String) - Method in interface com.hfg.xml.XMLNode
-
- getAttributeValue(XMLName) - Method in interface com.hfg.xml.XMLNode
-
- getAttributeValue(XMLName) - Method in class com.hfg.xml.XMLTag
-
- getAttributeValue(String) - Method in class com.hfg.xml.XMLTag
-
- getAuthor() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- getAuthors() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getAuthors() - Method in class com.hfg.citation.Citation
-
- getAuthorString() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getAuthType() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getAuthUsernameCookie(HttpServletRequest) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getAuthUsernameCookieValue(HfgCookie) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getAutoCommit() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getAutoCompressPictures() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- getAvailabilityTimeoutSec() - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
Returns the maximum amount of time to wait for a connection to become available
when requesting a connection from the pool.
- getAverageMass() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getAverageMass() - Method in class com.hfg.bio.seq.Protein
-
- getAverageMass(ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
- getAverageMass() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getAverageMass() - Method in class com.hfg.chem.Element
-
- getAverageMass() - Method in interface com.hfg.chem.Matter
-
- getAverageMass() - Method in class com.hfg.chem.Molecule
-
- getAxisColor() - Method in class com.hfg.graphics.Track
-
- getAxisColor() - Method in class com.hfg.graphics.Track2D
-
- getBackground() - Method in class com.hfg.graphics.Graphics2DState
-
- getBackground() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getBackgroundColor() - Method in class com.hfg.graphics.ColorSpec
-
- getBackgroundColor() - Method in class com.hfg.graphics.Track
-
- getBackgroundColor() - Method in class com.hfg.graphics.Track2D
-
- getBackgroundColor() - Method in class com.hfg.html.Td
-
- getBackgroundColor() - Method in class com.hfg.html.Th
-
- getBackgroundColor() - Method in class com.hfg.html.Tr
-
- getBackgroundColor() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- getBarStyleClass() - Method in class com.hfg.math.HistogramSvgSettings
-
- getBasecallerPeakLocations() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getBasecallerQualityScores() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getBasecallerSeq() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getBaseQuery() - Method in class com.hfg.sql.table.DatabaseTable
-
- getBaseQueryURL() - Method in class com.hfg.citation.ncbi.NCBI_eFetch
-
- getBaseSIUnitConverter() - Method in class com.hfg.units.SI_ScalingFactor
-
- getBaseType() - Method in class com.hfg.bio.Nucleotide
-
- getBaseType() - Method in class com.hfg.sql.table.field.SQLArray
-
- getBaseType() - Method in class com.hfg.xml.xsd.XsdComplexType
-
- getBaseTypeName() - Method in class com.hfg.sql.table.field.SQLArray
-
- getBaseUnit(QuantityType) - Method in class com.hfg.units.MeasurementSystem
-
- getBaseUnitMap() - Method in class com.hfg.units.BritishImperialSystem
-
- getBaseUnitMap() - Method in class com.hfg.units.MeasurementSystem
-
- getBaseUnitMap() - Method in class com.hfg.units.SI_System
-
- getBaseUnits() - Method in class com.hfg.units.MeasurementSystem
-
- getBaseURI() - Method in class com.hfg.xml.XMLAttribute
-
- getBegin() - Method in class com.hfg.bio.DigestFragment
-
- getBeginCell() - Method in class com.hfg.xml.msofficexml.xlsx.CellRange
-
- getBeginFragIndex() - Method in class com.hfg.bio.DigestFragment
-
- getBias() - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Returns the bias - the fraction of this codon's use as compared to the other codons that
code for the same amino acid.
- getBigDecimal(int, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
- getBigDecimal(String, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
- getBigDecimal(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.math.BigDecimal with full precision.
- getBigDecimal(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.math.BigDecimal with full precision.
- getBinaryStream(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a stream of
uninterpreted bytes.
- getBinaryStream(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a stream of uninterpreted
bytes.
- getBinDir() - Static method in class com.hfg.image.ImageMagick
-
- getBinSize() - Method in class com.hfg.math.Histogram
-
- getBioprojectAccession() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getBiosampleAccession() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getBioSequenceFactory() - Method in class com.hfg.bio.seq.format.ReadableSeqFormatBase
-
- getBioSequenceType() - Method in class com.hfg.bio.seq.alignment.KMerBitSet
-
- getBioSequenceType() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getBioSequenceType() - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- getBioSequenceType() - Method in class com.hfg.bio.seq.pattern.ProteinPattern
-
- getBioSequenceType() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getBitString(byte) - Static method in class com.hfg.util.ByteUtil
-
Returns a string like "10110011" to represent the specified 8-bit byte.
- getBLAST_Databases() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getBLAST_Program() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getBlip() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlBlipFill
-
Returns the blip tag if one exists or else instantiates a new one.
- getBlipFill() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPicture
-
Returns the blipFill tag if one exists or else instantiates a new one.
- getBlob(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Blob object
in the Java programming language.
- getBlob(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Blob object
in the Java programming language.
- getBLTL_OnChangeCallback() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getBLTL_SelectionCompleteCallback() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getBody() - Method in class com.hfg.html.HTML
-
- getBody() - Method in class com.hfg.xml.msofficexml.docx.part.DocumentPart
-
- getBondOrder() - Method in class com.hfg.chem.CovalentBond
-
- getBonds() - Method in class com.hfg.chem.Atom
-
- getBookmark(String) - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getBoolean(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a boolean in the Java programming language.
- getBoolean(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a boolean in the Java programming language.
- getBorder() - Method in class com.hfg.html.Frameset
-
- getBorder() - Method in class com.hfg.html.Img
-
- getBorder(WmlBorderPosition) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphBorder
-
- getBorder() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- getBorder(CSSDeclaration) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- getBorder() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getBorder() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getBorder() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getBorderId() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getBorders() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- getBorders() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- getBorders() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- getBorders() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getBottom() - Method in class com.hfg.graphics.PageMargins
-
- getBottom() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getBottom() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getBoundary() - Method in class com.hfg.util.mime.MultipartMimeGenerator
-
- getBoundsBox() - Method in class com.hfg.svg.AbstractSvgNode
-
- getBoundsBox() - Method in class com.hfg.svg.SVG
-
- getBoundsBox() - Method in class com.hfg.svg.SvgCircle
-
- getBoundsBox() - Method in class com.hfg.svg.SvgEllipse
-
- getBoundsBox() - Method in class com.hfg.svg.SvgGroup
-
- getBoundsBox() - Method in class com.hfg.svg.SvgLine
-
- getBoundsBox() - Method in interface com.hfg.svg.SvgNode
-
- getBoundsBox() - Method in class com.hfg.svg.SvgPath
-
- getBoundsBox() - Method in class com.hfg.svg.SvgPolygon
-
- getBoundsBox() - Method in class com.hfg.svg.SvgPolyline
-
- getBoundsBox() - Method in class com.hfg.svg.SvgRect
-
- getBoundsBox() - Method in class com.hfg.svg.SvgSwitch
-
- getBoundsBox() - Method in class com.hfg.svg.SvgText
-
- getBoundsBox() - Method in class com.hfg.svg.SvgUse
-
- getBranchLengthTraversalLimit() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getBrightness() - Method in class com.hfg.html.attribute.HTMLColor
-
Returns the color's brightness.
- getBrightness(Color) - Static method in class com.hfg.html.attribute.HTMLColor
-
Returns the color's brightness.
- getBrowserSessionCookie(HttpServletRequest) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getBufferedImage(TreeDisplaySettings) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getBufferedImage(Strand) - Method in class com.hfg.graphics.Track
-
- getBufferedImage(Strand) - Method in class com.hfg.graphics.Track2D
-
- getBufferedImageWithMaxWidth(TreeDisplaySettings, GfxSize) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getBuild() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getByCode(String) - Static method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
Retrieves the UniprotSpecies for the specified species code (Ex: 'HUMAN' from the locus 'TNF_HUMAN').
- getById(int) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- getByLocus(String) - Static method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
Retrieves the UniprotSpecies for the specified loucs (Ex: 'TNF_HUMAN').
- getByName(String) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Retrieves the NCBITaxon for the specified common name, scientific name,
or GenBank common name.
- getByName(String) - Method in interface com.hfg.bio.taxonomy.ncbi.NCBITaxonomyDataSource
-
Retrieves the NCBITaxon for the specified common name, scientific name,
or GenBank common name.
- getByName(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonomyDataSourceImpl
-
- getBypassPattern() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getByTaxonId(int) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Returns the taxon for the specified NCBI taxon id.
- getByTaxonId(int) - Method in interface com.hfg.bio.taxonomy.ncbi.NCBITaxonomyDataSource
-
Retrieves the taxon for the specified NCBI taxon id.
- getByTaxonId(int) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonomyDataSourceImpl
-
- getByte(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a byte in the Java programming language.
- getByte(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a byte in the Java programming language.
- getByteFromBitString(String) - Static method in class com.hfg.util.ByteUtil
-
Returns the 8-bit byte corresponding to a specified string like "10110011".
- getBytes(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a byte array in the Java programming language.
- getBytes(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a byte array in the Java programming language.
- getBytes() - Method in class com.hfg.util.io.FileBytes
-
- getBytesFromInt(int) - Static method in class com.hfg.util.ByteUtil
-
Returns a byte[] corresponding to an int.
- getCachedContentFile() - Method in class com.hfg.util.mime.MimeEntity
-
- getCachedInputStream() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getCalculateStatisticalScores() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getCalendar() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- getCalendarNum() - Method in class com.hfg.units.TimeUnit
-
Returns the associated int value to use with a Calendar object's get() method.
- getCallingClassName() - Static method in class com.hfg.util.StackTraceUtil
-
- getCallingMethodName() - Static method in class com.hfg.util.StackTraceUtil
-
- getCallingStackTraceElement(List<StackTraceElementFilter>) - Static method in class com.hfg.util.StackTraceUtil
-
- getCallNumber() - Method in class com.hfg.citation.Citation
-
- getCatalog() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getCell(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- getCellByColIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- getCellFormats() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getCellProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCell
-
Returns the table cell properties tag if one exists or else instantiates a new one.
- getCellRange() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- getCellRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- getCells() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRow
-
Returns the row cells.
- getCells() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- getCellStyleFormats() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getCellStyles() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getCellType() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- getCellWithSmallestValue() - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- getCellWithSmallestValue() - Method in class com.hfg.util.collection.SymmetricMatrix
-
- getCenterPoint() - Method in class com.hfg.svg.AbstractSvgNode
-
- getCenterPoint() - Method in interface com.hfg.svg.SvgNode
-
- getChain(String) - Method in class com.hfg.bio.seq.Protein
-
Returns the chain with the specified id.
- getChainId() - Method in class com.hfg.bio.seq.SeqLocation
-
- getChainIds() - Method in class com.hfg.bio.seq.Protein
-
- getChainLinkage() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getChains() - Method in class com.hfg.bio.seq.Protein
-
- getChainStoichiometryGroups() - Method in class com.hfg.bio.seq.Protein
-
Returns chains of this Protein object organized into groups that are identical sequences.
- getCharacterEncoding() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getCharactersForUnicodeScript(Character.UnicodeScript) - Static method in class com.hfg.util.StringUtil
-
- getCharacterStream(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.io.Reader object.
- getCharacterStream(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.io.Reader object.
- getCharArray(RandomAccessFile, int) - Static method in class com.hfg.util.ByteUtil
-
Returns a char[] derived from the specified RandomAccessFile.
- getCharArray(ByteSource, int) - Static method in class com.hfg.util.ByteUtil
-
Returns a char[] derived from the specified ByteSource.
- getCharArray() - Method in class com.hfg.xml.parser.XMLStringBuffer
-
- getCharCount(CharSequence, char) - Static method in class com.hfg.util.StringUtil
-
Returns the number of times the specified character appears in the specified String.
- getCharge() - Method in class com.hfg.chem.Atom
-
- getCharge(int, double) - Method in class com.hfg.chem.IonizableGroup
-
- getChars(int, int, char[], int) - Method in class com.hfg.util.StringBuilderPlus
-
- getChecksum() - Method in class com.hfg.util.io.MD5InputStream
-
- getChemicalFormula() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Returns a chemical formula String like 'C5H11NO'.
- getChemicalFormula() - Method in class com.hfg.chem.Element
-
Returns a chemical formula String.
- getChemicalFormula() - Method in class com.hfg.chem.ElementalComposition
-
Returns a chemical formula String like 'C5H11NO'.
- getChemicalFormula() - Method in interface com.hfg.chem.Matter
-
- getChemicalFormula() - Method in class com.hfg.chem.Molecule
-
Returns a chemical formula String like 'C5H11NO'.
- getChemicalFormulaWithSubscripts() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Returns a chemical formula String like 'Câ‚…Hâ‚â‚NO'.
- getChemicalFormulaWithSubscripts() - Method in class com.hfg.chem.ElementalComposition
-
Returns a chemical formula String like 'Câ‚…Hâ‚â‚NO'.
- getChemicalFormulaWithSubscripts() - Method in class com.hfg.chem.Molecule
-
Returns a chemical formula String like 'Câ‚…Hâ‚â‚NO'.
- getChildNodes() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getChildNodes() - Method in class com.hfg.xml.XMLAttribute
-
- getChiralityOrder() - Method in class com.hfg.chem.Atom
-
- getChromosome() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getCladogramStyle() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getClassAttribute() - Method in class com.hfg.html.HTMLTag
-
Not called getClass() for obvious reasons.
- getClassAttribute() - Method in class com.hfg.svg.AbstractSvgNode
-
Not called getClass() for obvious reasons.
- getClassname() - Method in class com.hfg.util.BasicClassFileInfo
-
- getClassName() - Method in class com.hfg.util.StackTraceElementFilter
-
- getClientHost() - Method in interface com.hfg.util.User
-
- getClientHost() - Method in class com.hfg.util.UserImpl
-
- getClientHostIP() - Method in interface com.hfg.util.User
-
- getClientHostIP() - Method in class com.hfg.util.UserImpl
-
- getClientInfo(String) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getClientInfo() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getClip() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getClipBounds() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getClob(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Clob object
in the Java programming language.
- getClob(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Clob object
in the Java programming language.
- getClone() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getClone() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getClosestLeaf(PhyloNode) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getClosestLeafPair() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getCmdChar() - Method in class com.hfg.svg.path.SvgPathCmd
-
- getCode() - Method in class com.hfg.bio.seq.format.EMBL_DataClass
-
Returns the 3-letter EMBL data class code.
- getCode() - Method in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Returns the 3-letter GenBank division code.
- getCode() - Method in interface com.hfg.bio.taxonomy.SeqRepositoryDivision
-
- getCode() - Method in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
Returns the 3-letter EMBL division code.
- getCodon(String) - Method in class com.hfg.bio.seq.translation.CodonTable
-
Can be used to retrieve the internal Codon object which can contain the AA mapping and codon usage data.
- getCodonForAA_viaWeightedSelection(char) - Method in class com.hfg.bio.seq.translation.CodonTable
-
Returns a weighted randomly selected codon for the specified amino acid.
- getCodonForAA_viaWeightedSelection(char, float) - Method in class com.hfg.bio.seq.translation.CodonTable
-
Returns a weighted randomly selected codon meeting a specified minimum usage bias
for the specified amino acid.
- getCodons() - Method in class com.hfg.bio.seq.translation.CodonTable
-
- getCodonsForAA(char) - Method in class com.hfg.bio.seq.translation.CodonTable
-
- getCodonUsage() - Method in class com.hfg.bio.seq.translation.Codon
-
- getCol(String) - Method in class com.hfg.sql.table.DatabaseTable
-
- getCol() - Method in class com.hfg.sql.table.field.DatabaseField
-
- getCol(CK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- getCol(CK) - Method in class com.hfg.util.collection.SparseMatrix
-
- getCol() - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
Returns the column as a String.
- getColIndex(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseField
-
- getColIndex() - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
Returns the column index as a 1-based number.
- getColKey() - Method in class com.hfg.util.collection.MatrixCell
-
- getColor() - Method in class com.hfg.bio.AAGroup
-
- getColor() - Method in class com.hfg.bio.glyco.Monosaccharide
-
- getColor() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getColor() - Method in class com.hfg.bio.seq.Exon
-
- getColor() - Method in class com.hfg.bio.seq.Gene
-
- getColor() - Method in class com.hfg.graphics.Gene2D
-
- getColor() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getColor() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getColorist() - Method in class com.hfg.graphics.DataStylistGenerator
-
- getColorPalette() - Method in class com.hfg.graphics.PaletteColorist
-
- getColors() - Method in class com.hfg.graphics.ColorScale
-
- getColors() - Method in class com.hfg.graphics.NonlinearColorScale
-
- getColorScale() - Method in class com.hfg.graphics.ScaleColorist
-
- getColorScale() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfColorScaleRule
-
- getColorScheme() - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlThemeElements
-
Returns the color scheme tag.
- getColorSpec() - Method in class com.hfg.graphics.DataStylist
-
- getColorSpec() - Method in class com.hfg.graphics.DataStylistGenerator
-
- getColorValues() - Method in interface com.hfg.graphics.ColorPalette
-
- getColorValues() - Method in class com.hfg.graphics.ColorPaletteImpl
-
- getCols() - Method in class com.hfg.html.Frameset
-
- getCols() - Method in class com.hfg.html.Table
-
- getCols() - Method in class com.hfg.html.Textarea
-
- getCols() - Method in class com.hfg.sql.table.DatabaseTable
-
- getColSpan() - Method in class com.hfg.html.Td
-
- getColSpan() - Method in class com.hfg.html.Th
-
- getColTotal(CK) - Method in class com.hfg.util.collection.NumberMatrix
-
- getCommand() - Method in class com.hfg.util.Executor
-
Returns the command to execute.
- getCommandLineParams() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getCommandLineParams() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getComments() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getCommentsPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getCommentsPart() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getCommonDrawingMLNonVisualProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Returns the drawingML common non-visual properties tag if one exists or else instantiates a new one.
- getCommonKMerCount(KMerBitSet) - Method in class com.hfg.bio.seq.alignment.KMerBitSet
-
- getCommonName() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getCommonName() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
- getCommonSet() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Returns an unmodifiable Collection of the common taxons (those defined as class constants).
- getComparisonLength() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getComparisonLength() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getComparisonLength() - Method in class com.hfg.bio.seq.alignment.PctId
-
- getComplement() - Method in class com.hfg.bio.Nucleotide
-
- getComplementSequence() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getComplementSequenceReader() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getComplementSequenceStream() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getComponents() - Method in class com.hfg.chem.solution.AqueousSolution
-
- getComposite() - Method in class com.hfg.graphics.Graphics2DState
-
- getComposite() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getComposition() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Returns a Map with 1-letter code Strings as keys and Integers as the values.
- getComposition() - Method in class com.hfg.bio.seq.Protein
-
Returns a map with AminoAcids as keys and Integers as the values.
- getConcurrency() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the concurrency mode of this ResultSet object.
- getConfig() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getConfigSummary() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlXsd
-
- getConfigSummary() - Method in class com.hfg.xml.xsd.Xsd
-
For debugging/logging purposes.
- getConnection() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getConnection() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getConnection(String, String) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getConnection(String, LoginCredentials, JDBCConnectionSettings) - Method in class com.hfg.sql.jdbc.JDBCServer
-
- getConnection(JDBCServer, String, LoginCredentials) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getConnectString(String) - Method in class com.hfg.sql.jdbc.JDBCServer
-
- getConnectString(String, JDBCConnectionSettings) - Method in class com.hfg.sql.jdbc.JDBCServer
-
- getConnectString(JDBCServer, String) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getConnectString(JDBCServer, String, JDBCConnectionSettings) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getConnectString(JDBCServer, String) - Method in class com.hfg.sql.jdbc.RDBMS
-
- getConnectString(JDBCServer, String, JDBCConnectionSettings) - Method in class com.hfg.sql.jdbc.RDBMS
-
- getConnectTimeoutInSeconds() - Method in class com.hfg.sql.jdbc.JDBCConnectionSettings
-
- getConnTestQuery() - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getConnTestQuery() - Method in class com.hfg.sql.jdbc.RDBMS
-
- getContactInfo() - Method in class com.hfg.bio.seq.format.SeqCitation
-
- getContent() - Method in class com.hfg.html.Script
-
- getContent() - Method in class com.hfg.svg.SvgScript
-
- getContent() - Method in class com.hfg.util.mime.MimeEntity
-
- getContent() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- getContent() - Method in class com.hfg.xml.XMLCDATA
-
The returned content does not contain any embedded subtags.
- getContent() - Method in class com.hfg.xml.XMLComment
-
The returned content does not contain any embedded subtags.
- getContent() - Method in interface com.hfg.xml.XMLContainer
-
The returned content does not contain any embedded subtags.
- getContent() - Method in class com.hfg.xml.XMLContainerImpl
-
- getContent() - Method in class com.hfg.xml.xsd.XsdComplexType
-
- getContent() - Method in class com.hfg.xml.xsd.XsdGroup
-
- getContent() - Method in class com.hfg.xml.xsd.XsdSequence
-
- getContentAttribute() - Method in class com.hfg.html.Meta
-
- getContentBoundsBox() - Method in class com.hfg.svg.SVG
-
- getContentDimensions() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSectionProperties
-
- getContentDisposition() - Method in class com.hfg.util.mime.MimeEntity
-
- getContentHandler() - Method in class com.hfg.xml.parser.SaxyParser
-
- getContentLength() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getContentPlusSubtagList() - Method in class com.hfg.xml.XMLContainerImpl
-
- getContentTag() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTag
-
Returns the sdt content tag if one exists or else instantiates a new one.
- getContentTransferEncoding() - Method in class com.hfg.util.mime.MimeEntity
-
- getContentType() - Method in class com.hfg.util.mime.MimeEntity
-
- getContentType() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getContentType() - Method in class com.hfg.xml.msofficexml.RelationshipType
-
- getContentTypesPart() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlDocument
-
- getContextPath() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getContig() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getContrastingColor() - Method in class com.hfg.html.attribute.HTMLColor
-
Returns BLACK or WHITE depending on which has the higher contrast.
- getContrastingColor(Color) - Static method in class com.hfg.html.attribute.HTMLColor
-
Returns BLACK or WHITE depending on which has the higher contrast.
- getControlPoint() - Method in class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- getCookies() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getCount(Character, Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getCovalentRadius() - Method in class com.hfg.chem.Element
-
Returns the covalent radius.
- getCredentials() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getCredentials() - Method in class com.hfg.util.io.ProxyConfig
-
- getCredentialsMgrKey() - Method in class com.hfg.ldap.LDAP_Config
-
- getCSSClass() - Method in class com.hfg.graphics.DataStylist
-
- getCSSClass() - Method in class com.hfg.graphics.DataStylistGenerator
-
- getCSSDeclarationsForHTMLTag(HTMLTag, CSSMediaType) - Method in class com.hfg.css.CSS
-
Returns CSS declarations that apply to the specified HTML tag.
- getCSSLevel() - Method in class com.hfg.css.CSSProperty
-
- getCSSRules() - Method in class com.hfg.css.CSS
-
- getCssStyle() - Method in class com.hfg.util.collection.DataColumn
-
- getCssTransform() - Method in class com.hfg.svg.AbstractSvgNode
-
- getCTerminalGapLength() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getCTerminalGroup() - Method in class com.hfg.bio.AminoAcidSet
-
- getCTerminalKa(CTerminalGroup, AminoAcid) - Method in class com.hfg.bio.KaSet
-
- getCTerminalSidechainKa(AminoAcid) - Method in class com.hfg.bio.KaSet
-
- getCurrentClassName() - Static method in class com.hfg.util.StackTraceUtil
-
- getCurrentDefaultNamespace() - Method in class com.hfg.xml.parser.SaxyParser
-
- getCurrentLineNumber() - Static method in class com.hfg.util.StackTraceUtil
-
- getCurrentMethodName() - Static method in class com.hfg.util.StackTraceUtil
-
- getCurrentUser() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getCurrentUser() - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQLConnection
-
- getCurrentYear() - Static method in class com.hfg.datetime.DateUtil
-
- getCursorName() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the name of the SQL cursor used by this ResultSet
object.
- getCustomField(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getData() - Method in class com.hfg.svg.SvgPath
-
- getData() - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- getDatabaseBioSequenceType() - Method in enum com.hfg.bio.seq.alignment.blast.BLAST_Program
-
- getDatabaseMajorVersion() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getDatabaseMinorVersion() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getDatabaseName() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getDatabases() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_DatabaseGroup
-
- getDatabaseTable() - Method in class com.hfg.sql.table.DatabaseRow
-
- getDatabaseVersionString() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getDataColumn(String) - Method in class com.hfg.util.collection.DataTable
-
- getDataColumns() - Method in class com.hfg.util.collection.DataTable
-
- getDataIndex() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getDataSet(DataColumn) - Method in class com.hfg.util.collection.DataTable
-
- getDataStream() - Method in class com.hfg.util.io.FileBytes
-
- getDataTable() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getDataType() - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- getDataType() - Method in interface com.hfg.bio.proteinproperty.SingleValueProteinProperty
-
- getDataType() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelData
-
Specifies the data type attribute.
- getDate(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Date object in the Java programming language.
- getDate(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Date object in the Java programming language.
- getDate(int, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Date object
in the Java programming language.
- getDate(String, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Date object
in the Java programming language.
- getDateCompleted() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getDateFormat() - Method in class com.hfg.javascript.ext.ExtModelField
-
- getDateFormatSymbols() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- getDateHeader(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getDateRevised() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getDB() - Method in class com.hfg.bio.DbXref
-
- getDbXrefs() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getDbXrefs() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getDeclarations() - Method in class com.hfg.css.CSSRule
-
- getDeclarationString() - Method in class com.hfg.css.CSSRule
-
- getDecodedValue() - Method in class com.hfg.webapp.HfgCookie
-
- getDefault() - Method in class com.hfg.xml.XMLNamespaceSet
-
- getDefaultBorder() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultCellFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultDateCellFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultEllipticCurveSpec() - Static method in class com.hfg.util.CryptoUtil
-
Returns the default SunEC-implemented elliptic curve spec used.
- getDefaultExecutable() - Static method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getDefaultExecutableDir() - Static method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getDefaultFill() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultFont() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultHideWithCommentsForLegacyBrowsers() - Static method in class com.hfg.xml.XMLCDATA
-
- getDefaultName() - Static method in class com.hfg.xml.msofficexml.docx.Docx
-
- getDefaultName() - Static method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getDefaultPort() - Method in class com.hfg.sql.jdbc.RDBMS
-
- getDefaultProteinAnalysisMode() - Method in class com.hfg.bio.KaSet
-
- getDefaultRDBMS() - Static method in class com.hfg.sql.table.DatabaseTable
-
- getDefaultSettings() - Static method in class com.hfg.bio.seq.alignment.blast.BLAST
-
- getDefaultSettings() - Static method in class com.hfg.bio.seq.alignment.muscle.Muscle
-
- getDefaultStyleFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDefaultTmpDirRoot() - Static method in class com.hfg.webapp.HfgHttpServletRequest
-
- getDefaultUserAgentString() - Static method in class com.hfg.util.io.HTTPRemoteFile
-
- getDefaultValences() - Method in class com.hfg.chem.Element
-
Returns the default values for the number of valence electrons for the element.
- getDefaultValues() - Static method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- getDegeneracy() - Method in class com.hfg.bio.Nucleotide
-
- getDegeneracyAsString() - Method in class com.hfg.bio.Nucleotide
-
- getDelimiter() - Method in class com.hfg.util.StringBuilderPlus
-
- getDenominator() - Method in class com.hfg.units.Unit
-
- getDescription() - Method in class com.hfg.bio.DbXref
-
- getDescription() - Method in enum com.hfg.bio.PhysicalProperty
-
- getDescription() - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- getDescription() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Database
-
- getDescription() - Method in enum com.hfg.bio.seq.alignment.blast.BLAST_Program
-
- getDescription() - Method in interface com.hfg.bio.seq.BioSequence
-
- getDescription() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getDescription() - Method in interface com.hfg.bio.seq.format.feature.FeatureKey
-
- getDescription() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- getDescription() - Method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeature
-
- getDescription() - Method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- getDescription() - Method in class com.hfg.bio.seq.Gene
-
- getDescription() - Method in class com.hfg.graphics.Gene2D
-
- getDescription() - Method in class com.hfg.graphics.Track
-
- getDescription() - Method in class com.hfg.graphics.Track2D
-
- getDescription() - Method in class com.hfg.util.collection.DataColumn
-
- getDescription() - Method in enum com.hfg.xml.msofficexml.docx.drawingml.DmlShapeType
-
- getDescription() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingDefinitionType
-
- getDescription() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- getDescription() - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- getDeviceConfiguration() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getDifferentialFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getDimension(File) - Static method in class com.hfg.image.ImageIO_Util
-
- getDimension(InputStream) - Static method in class com.hfg.image.ImageIO_Util
-
- getDimension(InputStream, ImageFormat) - Static method in class com.hfg.image.ImageIO_Util
-
- getDimensions() - Method in class com.hfg.graphics.PaperSize
-
- getDimensions() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- getDimensions() - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- getDir() - Method in class com.hfg.xml.msofficexml.docx.part.WmlVbaPart
-
- getDir() - Method in class com.hfg.xml.msofficexml.part.VbaPart
-
- getDisabledClass() - Method in class com.hfg.html.custom.CheckboxSpan
-
- getDispatcherType() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getDisplayMenuJavascript() - Method in class com.hfg.javascript.PopupMenuJS
-
- getDisplayString() - Method in enum com.hfg.css.CSSDisplayValue
-
- getDistance(String, String) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- getDistance() - Method in class com.hfg.network.Edge
-
- getDistanceFromRoot() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getDistanceMatrix(DistanceMatrixModel) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
Returns a distance matrix using the specified model.
- getDistinctChains() - Method in class com.hfg.bio.seq.Protein
-
- getDivision() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getDocDefaults() - Method in class com.hfg.xml.msofficexml.docx.part.StylesPart
-
Returns the document defaults tag if one exists or else instantiates a new one.
- getDoctype() - Method in class com.hfg.xml.parser.SaxyParser
-
After parsing, the Doctype (if one was set) can be retrieved here.
- getDoctype() - Method in class com.hfg.xml.parser.XMLTagReader
-
- getDoctype() - Method in class com.hfg.xml.XMLBasedDoc
-
- getDocumentPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getDocumentPropertiesPart() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlDocument
-
- getDOI() - Method in class com.hfg.citation.Citation
-
- getDomain() - Method in class com.hfg.ldap.LDAP_Config
-
- getDomain() - Method in class com.hfg.security.LoginCredentials
-
- getDomain() - Method in interface com.hfg.util.User
-
- getDomain() - Method in class com.hfg.util.UserImpl
-
- getDomainCommonName() - Method in class com.hfg.ldap.LDAP_Config
-
- getDonorChainId() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getDonorPosition() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getDonorSpliceSite() - Method in class com.hfg.bio.seq.genomic.Intron
-
- getDouble(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a double in the Java programming language.
- getDouble(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a double in the Java programming language.
- getDouble(ResultSet, String) - Static method in class com.hfg.sql.SQLUtil
-
- getDouble(ResultSet, DatabaseCol) - Static method in class com.hfg.sql.SQLUtil
-
- getDouble(ResultSet, int) - Static method in class com.hfg.sql.SQLUtil
-
- getDraggable() - Method in class com.hfg.html.HTMLTag
-
- getDraggable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getDrawingObjNonVisualProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Returns the drawing obj non-visual properties tag if one exists or else instantiates a new one.
- getDriverClassName() - Method in class com.hfg.sql.jdbc.RDBMS
-
- getDTDHandler() - Method in class com.hfg.xml.parser.SaxyParser
-
- getDumpMatrices() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getDx() - Method in class com.hfg.svg.SvgText
-
- getDy() - Method in class com.hfg.svg.SvgText
-
- getECKeyPair() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getECKeyPair(File) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getEdges() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getEditor() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getEffectExtent() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Returns the effect extent tag if one exists or else instantiates a new one.
- getEffectRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeStyle
-
Returns the effect reference (<a:effectRef>) tag.
- getElement() - Method in class com.hfg.chem.Atom
-
- getElement() - Method in class com.hfg.chem.Isotope
-
- getElement() - Method in class com.hfg.xml.XMLAttribute
-
- getElementalComposition() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Returns an unmodifiable copy of the elemental composition Map.
- getElementalComposition(ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
Returns an unmodifiable copy of the elemental composition Map adjusted (if necessary)
for the specified protein analysis mode.
- getElementalComposition() - Method in class com.hfg.bio.seq.ProteinXLink
-
Returns an unmodifiable copy of the elemental composition Map.
- getElementalComposition() - Method in class com.hfg.chem.Element
-
- getElementalComposition() - Method in interface com.hfg.chem.Matter
-
Returns an unmodifiable copy of the elemental composition Map.
- getElementalComposition() - Method in class com.hfg.chem.Molecule
-
Returns the elemental composition as an unmodifiable Map.
- getElements(XMLName) - Method in class com.hfg.xml.xsd.Xsd
-
- getElements(String) - Method in class com.hfg.xml.xsd.Xsd
-
- getEmail() - Method in interface com.hfg.util.User
-
- getEmail() - Method in class com.hfg.util.UserImpl
-
- getEMBL_Code() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getEmptyCellText() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getEnableDynamicGrouping() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getEncodedQualityString() - Method in class com.hfg.bio.seq.SeqQualityScores
-
- getEncoding() - Method in class com.hfg.xml.XMLBasedDoc
-
- getEnd() - Method in class com.hfg.bio.DigestFragment
-
- getEnd() - Method in class com.hfg.math.IntRange
-
Deprecated.
- getEnd() - Method in class com.hfg.math.Range
-
- getEndCell() - Method in class com.hfg.xml.msofficexml.xlsx.CellRange
-
- getEndFragIndex() - Method in class com.hfg.bio.DigestFragment
-
- getEndLocation() - Method in class com.hfg.bio.seq.Exon
-
- getEndLocation() - Method in class com.hfg.bio.seq.Gene
-
- getEndLocation() - Method in class com.hfg.graphics.Gene2D
-
- getEndProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTag
-
Returns the structured document tag end character properties tag (sdtEndPr) if one exists or else instantiates a new one.
- getEndTag() - Method in class com.hfg.xml.XMLTag
-
- getEntities() - Method in class com.hfg.xml.Doctype
-
- getEntity(int) - Method in class com.hfg.xml.parser.AbstractEntities
-
- getEntity(char) - Method in class com.hfg.xml.parser.AbstractEntities
-
- getEntityMap() - Method in class com.hfg.xml.parser.AbstractEntities
-
- getEntityMap() - Method in class com.hfg.xml.parser.Latin1Entities
-
- getEntityMap() - Method in class com.hfg.xml.parser.SymbolEntities
-
- getEntityResolver() - Method in class com.hfg.xml.parser.SaxyParser
-
- getErrorHandler() - Method in class com.hfg.xml.parser.SaxyParser
-
- getEscapedValue() - Method in class com.hfg.xml.XMLAttribute
-
- getEscapeProcessing() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getEValue() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getEValue() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getEValue() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getEvents(File) - Method in class com.hfg.util.FileTreeSnapshot
-
Returns a list of create/modify/delete events for files changed relative to the snapshot.
- getExceptionStackTrace(Throwable) - Static method in class com.hfg.util.StackTraceUtil
-
Returns a stack trace formatted similarly to the one produced by e.printStackTrace().
- getExcludedFromRefSeq() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getExcludedP1PrimeResidues() - Method in class com.hfg.bio.Protease
-
- getExcludedP1Residues() - Method in class com.hfg.bio.Protease
-
- getExcludedP2PrimeResidues() - Method in class com.hfg.bio.Protease
-
- getExcludedP2Residues() - Method in class com.hfg.bio.Protease
-
- getExcludedP3Residues() - Method in class com.hfg.bio.Protease
-
- getExcludedP4Residues() - Method in class com.hfg.bio.Protease
-
- getExcludedP5Residues() - Method in class com.hfg.bio.Protease
-
- getExcludedP6Residues() - Method in class com.hfg.bio.Protease
-
- getExecutable() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getExecutableDir() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getExecutableDir() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getExecutedCmd() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- getExecutedCmd() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- getExecutionTimeMillis() - Method in class com.hfg.util.Executor
-
Returns the execution time in milliseconds of executed command.
- getExitStatus() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- getExitStatus() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- getExons() - Method in class com.hfg.bio.seq.Gene
-
- getExons() - Method in class com.hfg.graphics.Gene2D
-
- getExpectedNumPoints() - Method in class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- getExpectedNumPoints() - Method in class com.hfg.svg.path.SvgPathSmoothQuadCurveToCmd
-
- getExpires() - Method in class com.hfg.webapp.HfgCookie
-
- getExpressions() - Method in class com.hfg.css.CSSMediaQuery
-
- getExtension(File) - Static method in class com.hfg.util.FileUtil
-
Returns the specified file's extension or null if no extension was found
(ex: 'foo.txt' would return 'txt').
- getExtension() - Method in class com.hfg.xml.msofficexml.OfficeOpenXMLContentType
-
- getExtension() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlMimeType
-
- getExtensionPenalty() - Method in class com.hfg.bio.seq.alignment.GapPenalties
-
- getExtinctionCoeff() - Method in class com.hfg.bio.seq.Protein
-
Returns the estimated molar extinction coefficient at A280.
- getFeature(XlsxConfig.Feature) - Method in class com.hfg.xml.msofficexml.xlsx.XlsxConfig
-
- getFeature(String) - Method in class com.hfg.xml.parser.SaxyParser
-
- getFeature(String, String) - Method in class com.hfg.xml.XMLAttribute
-
- getFeatures() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getFeatures(FeatureKey) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getFeatures() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getFeatures(FeatureKey) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getFetchDirection() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the fetch direction for this
ResultSet object.
- getFetchDirection() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getFetchSize() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the fetch size for this
ResultSet object.
- getFetchSize() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getField(DatabaseCol) - Method in class com.hfg.sql.table.DatabaseRow
-
- getField(String) - Method in interface com.hfg.util.User
-
- getField(String) - Method in class com.hfg.util.UserImpl
-
- getFieldNames() - Method in class com.hfg.util.UserImpl
-
- getFields() - Method in class com.hfg.sql.table.DatabaseRow
-
- getFieldType() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getFile() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_DatabaseMgr
-
- getFile() - Method in class com.hfg.security.CredentialsMgr
-
- getFile() - Method in class com.hfg.xml.msofficexml.docx.part.FooterPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.docx.part.HeaderPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.part.VbaPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlCommentsPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlDrawingPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlThemePart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.TablePart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetPart
-
- getFile() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetRelationshipPart
-
- getFileExtension() - Method in enum com.hfg.image.ImageFormat
-
- getFilename() - Method in class com.hfg.util.mime.MimeContentDisposition
-
- getFileParameter(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getFilePath() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getFilePath() - Method in class com.hfg.util.io.FileSystemRemoteFileLister
-
- getFilePath() - Method in interface com.hfg.util.io.RemoteFileLister
-
- getFiles() - Method in class com.hfg.util.FileTreeSnapshot
-
- getFill() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getFill() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getFill() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getFillId() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getFillRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeStyle
-
Returns the fill reference (<a:fillRef>) tag.
- getFills() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getFilter() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getFilterConfig() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getFilteredRemoteFileList(List<RemoteFileFilter>) - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getFilteredRemoteFileList() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getFilteredRemoteFileList() - Method in interface com.hfg.util.io.RemoteFileLister
-
- getFilterList() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getFilterList() - Method in interface com.hfg.util.io.RemoteFileLister
-
- getFirstAtom() - Method in class com.hfg.chem.CovalentBond
-
- getFirstCellWithContent() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
Returns the first cell in this row that contains content.
- getFirstChild() - Method in class com.hfg.xml.XMLAttribute
-
- getFirstCommonTaxon(NCBITaxon) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getFirstInitial() - Method in class com.hfg.citation.Author
-
- getFirstName() - Method in class com.hfg.citation.Author
-
- getFirstName() - Method in interface com.hfg.util.User
-
- getFirstName() - Method in class com.hfg.util.UserImpl
-
- getFlags() - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getFlex() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getFloat(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a float in the Java programming language.
- getFloat(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a float in the Java programming language.
- getFloat(ResultSet, String) - Static method in class com.hfg.sql.SQLUtil
-
- getFloat(ResultSet, DatabaseCol) - Static method in class com.hfg.sql.SQLUtil
-
- getFloat(ResultSet, int) - Static method in class com.hfg.sql.SQLUtil
-
- getFloat(InputStream, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a float from the given byte array.
- getFont() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getFont() - Method in class com.hfg.graphics.Graphics2DState
-
- getFont() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getFont() - Method in class com.hfg.svg.SvgGenerationSettings
-
- getFont() - Method in class com.hfg.util.collection.DataColumn
-
- getFont() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getFont() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getFont() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getFontId() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getFontMetrics(Font) - Method in class com.hfg.graphics.SvgGraphics2D
-
- getFontRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeStyle
-
Returns the font reference (<a:fontRef>) tag.
- getFontRenderContext() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getFonts() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getFontScheme() - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlThemeElements
-
Returns the font scheme tag.
- getFooter() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getFooter() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- getFooter() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getFooter() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getFor() - Method in class com.hfg.html.Label
-
- getForegroundColor() - Method in class com.hfg.graphics.ColorSpec
-
- getForegroundColor() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- getFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- getFormatCode() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- getFormatObj() - Method in class com.hfg.chem.format.BufferedMoleculeReader
-
- getFormatScheme() - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlThemeElements
-
Returns the format scheme tag.
- getFormatString() - Method in class com.hfg.util.collection.DataColumn
-
- getFormatted(String, DataColumn) - Method in class com.hfg.util.collection.DataTable
-
Uses a formatting string (like "%.1f%%") specified via the DataColumn to
render the object value for display.
- getFormatterUsingPhpSyntax(String) - Static method in class com.hfg.datetime.DateUtil
-
Makes a best attempt to convert php date format syntax into Java data format syntax.
- getForwardStrandImageHeight() - Method in class com.hfg.graphics.Track
-
- getForwardStrandImageHeight() - Method in class com.hfg.graphics.Track2D
-
- getFraction(Character, Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getFractionIncludingGaps(Character, Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getFragIndexString() - Method in class com.hfg.bio.DigestFragment
-
- getFragments() - Method in class com.hfg.bio.seq.ProteinDigest
-
- getFrameBorder() - Method in class com.hfg.html.Frame
-
- getFrameBorder() - Method in class com.hfg.html.Frameset
-
- getFrameBorder() - Method in class com.hfg.html.IFrame
-
- getFrameset() - Method in class com.hfg.html.HTML
-
- getFrameSpacing() - Method in class com.hfg.html.Frameset
-
- getFreqPer1000() - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Returns the frequency (per 1000 codons) that this codon was observed in the set of sequences.
- getFrequency() - Method in class com.hfg.util.scheduler.IntervalSchedule
-
- getFrom() - Method in class com.hfg.network.Edge
-
- getFromString(String) - Static method in class com.hfg.datetime.DateSortDirection
-
- getFTP_Path() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getFTPClient() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getFullTaxonomy() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getFullyQualifiedDomainName() - Static method in class com.hfg.util.NetworkUtil
-
Returns the fully qualified name of the local host.
- getFwdStrandCutSiteIndices() - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
Returns the forward strand cut site indices relative to the start of the motif.
- getG2Composite() - Method in class com.hfg.svg.AbstractSvgNode
-
- getG2Paint() - Method in class com.hfg.svg.AbstractSvgNode
-
- getG2Stroke() - Method in class com.hfg.svg.AbstractSvgNode
-
- getG2StrokeColor() - Method in class com.hfg.svg.AbstractSvgNode
-
- getGapCount(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getGapExtCount(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getGapExtScore(int) - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- getGapOpenCount(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getGapOpenScore(int) - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- getGapOpenScores() - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- getGapPenalties(PairwiseSeqType) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- getGapPenalties(PairwiseSeqType) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getGenBankCommonName() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getGenBankHiddenFlag() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getGenBankRefSeqPairedAssembly() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getGenes() - Method in class com.hfg.graphics.Track
-
- getGenes() - Method in class com.hfg.graphics.Track2D
-
- getGeneticCode() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getGenomicLocaiton() - Method in class com.hfg.bio.seq.genomic.Intron
-
- getGenomicRepresentation() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getGlycans() - Method in class com.hfg.bio.seq.Protein
-
- getGradleProjectRootDir() - Static method in class com.hfg.util.TestUtil
-
Locates the project root directory by searching for the build.gradle file.
- getGrandTotal() - Method in class com.hfg.util.collection.NumberMatrix
-
- getGraphic() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Returns the graphic tag if one exists or else instantiates a new one.
- getGraphicData() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphic
-
Returns the graphicData tag if one exists or else instantiates a new one.
- getGraphicFrameLocks() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlCommonDrawingMLNonVisualProperties
-
Returns the pic tag if one exists or else instantiates a new one.
- getGroupable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getGroupColumns() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getGroups(BioSequenceType) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_DatabaseMgr
-
- getGutter() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getHCount() - Method in class com.hfg.chem.Atom
-
- getHead() - Method in class com.hfg.html.HTML
-
- getHeadEnd() - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Returns the headEnd tag if one exists or else instantiates a new one.
- getHeader() - Method in class com.hfg.html.HTMLDoc
-
Used by toXML() and toHTML() for content placed at the start of the document.
- getHeader(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getHeader() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelDoc
-
- getHeader() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getHeader() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- getHeader() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getHeader() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getHeader() - Method in class com.hfg.xml.XMLBasedDoc
-
- getHeaderNames() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getHeaderRowDepth() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getHeaders(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getHeight() - Method in class com.hfg.graphics.units.GfxSize2D
-
- getHeight() - Method in class com.hfg.html.Applet
-
- getHeight() - Method in class com.hfg.html.IFrame
-
- getHeight() - Method in class com.hfg.html.Img
-
- getHeight() - Method in class com.hfg.html.ObjectTag
-
- getHeight() - Method in class com.hfg.svg.SVG
-
- getHeight() - Method in class com.hfg.svg.SvgForeignObject
-
- getHeight() - Method in class com.hfg.svg.SvgGenerationSettings
-
- getHeight() - Method in class com.hfg.svg.SvgRect
-
- getHeight() - Method in class com.hfg.svg.SvgText
-
- getHeight() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- getHeightInPixels() - Method in class com.hfg.graphics.Gene2D
-
- getHexEntity(String) - Method in class com.hfg.xml.parser.AbstractEntities
-
- getHexString(byte[]) - Static method in class com.hfg.util.ByteUtil
-
Returns a hex string representing the given byte array.
- getHidden() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getHiddenSubtreeRootFlag() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getHideable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getHideWithCommentsForLegacyBrowsers() - Method in class com.hfg.xml.XMLCDATA
-
- getHighestFreqResidues(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
Returns the residue with the highest frequency at the specified position or
multiple residues if they share the highest frequency value.
- getHighlightColor() - Method in class com.hfg.graphics.Track
-
- getHighlightColor() - Method in class com.hfg.graphics.Track2D
-
- getHoldability() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getHoldability() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the holdability of this ResultSet object
- getHost() - Method in class com.hfg.sql.jdbc.JDBCServer
-
Returns the host machine where the database server is located.
- getHost() - Method in class com.hfg.util.io.ProxyConfig
-
- getHostNameForIPAddress(String) - Static method in class com.hfg.util.NetworkUtil
-
- getHTMLAttributeName() - Method in class com.hfg.html.attribute.Align
-
- getHTMLAttributeName() - Method in class com.hfg.html.attribute.Shape
-
- getHTMLAttributeName() - Method in class com.hfg.html.attribute.VAlign
-
- getHTMLFormatted(String, DataColumn) - Method in class com.hfg.util.collection.DataTable
-
Uses a formatting string (like "%.1f%%") specified via the DataColumn to
render the object value for display.
- getId() - Method in class com.hfg.bio.DbXref
-
- getId() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getId() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getID() - Method in interface com.hfg.bio.seq.BioSequence
-
- getID() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getId() - Method in class com.hfg.bio.seq.Gene
-
- getId() - Method in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
- getId() - Method in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- getId() - Method in class com.hfg.graphics.Gene2D
-
- getId() - Method in class com.hfg.html.custom.TabbedPaneSet
-
- getId() - Method in class com.hfg.html.HTMLTag
-
- getId() - Method in class com.hfg.sql.table.DatabaseRowWithIntPrimaryKey
-
- getId() - Method in class com.hfg.sql.table.DatabaseRowWithLongPrimaryKey
-
- getId() - Method in class com.hfg.svg.SvgGroup
-
- getId() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- getId() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- getId() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- getId() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlAbstractNumbering
-
- getId() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlBookmark
-
- getId() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlHyperlink
-
- getId() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- getId() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- getIdCol() - Method in class com.hfg.sql.table.DatabaseRow
-
- getIdCol() - Method in class com.hfg.sql.table.DatabaseTable
-
- getIgnoreGaps() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getImage(Strand) - Method in class com.hfg.graphics.Track
-
- getImage(Strand) - Method in class com.hfg.graphics.Track2D
-
- getImageDimensions(File) - Method in class com.hfg.image.ImageMagick
-
- getImageMap(Strand) - Method in class com.hfg.graphics.Track
-
- getImageMap(Strand) - Method in class com.hfg.graphics.Track2D
-
- getImageUrl() - Method in interface com.hfg.util.User
-
- getImageUrl() - Method in class com.hfg.util.UserImpl
-
- getImageWidth() - Method in class com.hfg.graphics.Track
-
- getImageWidth() - Method in class com.hfg.graphics.Track2D
-
- getImplicitHCount() - Method in class com.hfg.chem.Atom
-
- getIndentation() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- getIndentSize() - Method in class com.hfg.xml.XMLEmitter
-
- getIndex() - Method in class com.hfg.util.collection.DataColumn
-
- getIndex() - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
Returns the index value for this color.
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- getIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getIndexedPosition(int) - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getIndexForKey(K) - Method in class com.hfg.util.collection.SymmetricMatrix
-
- getInfoForUser(String) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUser(String, List<LDAP_UserField>) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUser(LdapName, String) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUser(LdapName, String, List<LDAP_UserField>) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUsers(String) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUsers(String, List<LDAP_UserField>) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUsers(LdapName, String, List<LDAP_UserField>) - Method in class com.hfg.ldap.LDAPClient
-
- getInfoForUsersWithPaging(LdapContext, LdapName, String, List<LDAP_UserField>) - Method in class com.hfg.ldap.LDAPClient
-
- getInfraspecificName() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getInheritedDivisionFlag() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getInheritedGeneticCodeFlag() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getInheritedMitochondrialGeneticCodeFlag() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getInitialURL() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getInline() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawing
-
Returns the inline tag if one exists or else instantiates a new one.
- getInnerConnection() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getInputFile() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getInputStream() - Method in class com.hfg.util.io.ByteArrayIOStream
-
- getInputStream() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getInputStream() - Method in class com.hfg.util.io.FTPRemoteFile
-
Note that the FTP connection is closed when the returned InputStream is closed.
- getInputStream() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getInputStream() - Method in interface com.hfg.util.io.RemoteFile
-
- getInputStream() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getInstance() - Static method in class com.hfg.bio.proteinproperty.NativeAnalysisMode
-
- getInstance() - Static method in class com.hfg.bio.seq.translation.StandardTranslationTable
-
- getInstance() - Static method in class com.hfg.bio.StandardAAGroupingScheme
-
- getInstance() - Static method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getInstance() - Static method in class com.hfg.units.BritishImperialSystem
-
- getInstance() - Static method in class com.hfg.units.SI_System
-
- getInstance() - Static method in class com.hfg.xml.msofficexml.OfficeOpenXmlXsd
-
- getInstance() - Static method in class com.hfg.xml.parser.Latin1Entities
-
- getInstance() - Static method in class com.hfg.xml.parser.SymbolEntities
-
- getInstitution() - Method in class com.hfg.citation.Citation
-
- getInstrumentClass() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getInstrumentFamily() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getInstrumentName() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getInt(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
an int in the Java programming language.
- getInt(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
an int in the Java programming language.
- getInt(byte[], int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an int from the given byte array.
- getInt(InputStream, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an int from the given byte array.
- getInt(RandomAccessFile) - Static method in class com.hfg.util.ByteUtil
-
Returns an int from the current position of the specified RandomAccessFile.
- getInt(RandomAccessFile, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an int from the current position of the specified RandomAccessFile.
- getInt(ByteSource, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an int from the current position of the specified ByteSource.
- getInteger(ResultSet, String) - Static method in class com.hfg.sql.SQLUtil
-
- getInteger(ResultSet, DatabaseCol) - Static method in class com.hfg.sql.SQLUtil
-
- getInteger(ResultSet, int) - Static method in class com.hfg.sql.SQLUtil
-
- getInterfaceClassnames() - Method in class com.hfg.util.BasicClassFileInfo
-
- getInternalSubset() - Method in class com.hfg.xml.Doctype
-
The internal subset as a string, or null if there is none.
- getIntHeader(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getIntrons() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- getIntValue() - Method in class com.hfg.math.RomanNumeral
-
- getIntValue() - Method in class com.hfg.math.RomanNumeralSymbol
-
Returns the integer value of the Roman numeral symbol.
- getInventors() - Method in class com.hfg.citation.PatentData
-
- getIonizableGroups(Molecule) - Method in class com.hfg.bio.KaSet
-
- getISBN() - Method in class com.hfg.citation.Citation
-
- getISO_8601_Date() - Static method in class com.hfg.datetime.DateUtil
-
- getISO_8601_Date(Date) - Static method in class com.hfg.datetime.DateUtil
-
- getISO_8601_Date(Instant) - Static method in class com.hfg.datetime.DateUtil
-
- getISO_8601_Date(LocalDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getISO_8601_Date(ZonedDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getIsoelectricPoint() - Method in class com.hfg.bio.seq.Protein
-
Determines the isoelectric point (the pH at which the net charge is zero) for the protein.
- getIsoelectricPoint(KaSet) - Method in class com.hfg.bio.seq.Protein
-
Determines the isoelectric point (the pH at which the net charge is zero)
for the protein assuming reducing conditions.
- getIsoelectricPoint(KaSet, ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
Determines the isoelectric point (the pH at which the net charge is zero) for the protein.
- getIsolate() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getIsotopicComposition() - Method in class com.hfg.chem.Isotope
-
Specifies the isotopic composition (mole fraction) for the isotope.
- getISSN() - Method in class com.hfg.citation.Citation
-
- getISSN() - Method in class com.hfg.citation.Journal
-
Returns the ISSN (International Standard Serial Number) for the Journal.
- getIssue() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getIssue() - Method in class com.hfg.citation.Citation
-
- getItemId() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getItems() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlList
-
- getJavascript() - Method in class com.hfg.graphics.Track
-
- getJavascript() - Method in class com.hfg.graphics.Track2D
-
- getJob() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- getJoinType() - Method in class com.hfg.sql.JoinClause
-
- getJournal() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getJournal() - Method in class com.hfg.citation.Citation
-
- getJpgQuality() - Method in class com.hfg.image.ImageMagick
-
- getKa() - Method in class com.hfg.chem.IonizableGroup
-
- getKas() - Method in class com.hfg.bio.glyco.Glycan
-
Returns a List of IonizableGroup objects.
- getKas() - Method in class com.hfg.chem.Molecule
-
Returns a List of IonizableGroup objects.
- getKaSet() - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- getKey(V) - Method in class com.hfg.util.collection.BiHashMap
-
Performs a reverse lookup on the Map.
- getKey(V) - Method in interface com.hfg.util.collection.BiMap
-
- getKey() - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- getKeywords() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getKeywords() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getKingdomCode() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
- getKMerSize() - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- getLabel() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getLabel() - Method in class com.hfg.graphics.DataStylist
-
- getLabel() - Method in class com.hfg.graphics.DataStylistGenerator
-
- getLabel() - Method in class com.hfg.html.OptGroup
-
- getLabelColor() - Method in class com.hfg.graphics.Track
-
- getLabelColor() - Method in class com.hfg.graphics.Track2D
-
- getLabelWidthInPixels() - Method in class com.hfg.graphics.Gene2D
-
- getLabelWidthInPixels(String) - Method in class com.hfg.graphics.Track
-
- getLabelWidthInPixels(String) - Method in class com.hfg.graphics.Track2D
-
- getLane() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getLanguage() - Method in class com.hfg.citation.Citation
-
- getLastAtom() - Method in class com.hfg.chem.Molecule
-
- getLastChild() - Method in class com.hfg.xml.XMLAttribute
-
- getLastExecutionStartDate() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- getLastGeneratedId(Connection, DatabaseCol) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getLastGeneratedId(Connection, DatabaseCol) - Method in class com.hfg.sql.jdbc.RDBMS
-
- getLastLevel() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlList
-
- getLastLogon() - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- getLastName() - Method in class com.hfg.citation.Author
-
- getLeafFacingEdges() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
Returns the leaf-facing edges.
- getLeafLabelLeftPadding() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getLeafNodes() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getLeft() - Method in class com.hfg.bio.seq.Exon
-
- getLeft() - Method in class com.hfg.bio.seq.Gene
-
The leftmost basepair of the gene (the start location if the gene is on the
forward strand or the end location if the gene is on the reverse strand).
- getLeft() - Method in class com.hfg.graphics.Gene2D
-
The leftmost basepair of the gene (the start location if the gene is on the
forward strand or the end location if the gene is on the reverse strand).
- getLeft() - Method in class com.hfg.graphics.PageMargins
-
- getLeft() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getLeft() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getLength() - Method in class com.hfg.xml.XMLAttributeMap
-
- getLetter() - Method in class com.hfg.bio.AAGroup
-
- getLetter() - Method in class com.hfg.math.RomanNumeralSymbol
-
Returns the character value of the Roman numeral symbol.
- getLevel() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingProperties
-
- getLevels() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlAbstractNumbering
-
Returns the defined level objects.
- getLexicalHandler() - Method in class com.hfg.xml.parser.SaxyParser
-
- getLibraryPath() - Static method in class com.hfg.image.Aperture
-
This function retrieves the current default Aperture library path.
- getLibraryPath() - Static method in class com.hfg.image.IPhoto
-
This function retrieves the current default iPhoto library path.
- getLightSource() - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- getLine() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShapeProperties
-
Returns the line tag if one exists or else instantiates a new one.
- getLinearPosition(int) - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getLineHeight() - Method in class com.hfg.svg.SvgTSpan
-
- getLineIndex() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getLineLength() - Method in class com.hfg.bio.seq.format.FASTA
-
- getLineRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeStyle
-
Returns the line reference (<a:lnRef>) tag.
- getLocalAddr() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getLocale() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getLocales() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getLocalName() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getLocalName() - Method in class com.hfg.xml.XMLAttribute
-
Returns the local part of the qualified name of this node.
- getLocalName() - Method in class com.hfg.xml.XMLName
-
- getLocalName() - Method in class com.hfg.xml.xsd.XsdElement
-
- getLocalName() - Method in class com.hfg.xml.xsd.XsdType
-
- getLocalPort() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getLocation() - Method in interface com.hfg.bio.seq.format.feature.SeqFeature
-
- getLocation() - Method in class com.hfg.bio.seq.format.feature.SeqFeatureImpl
-
- getLocation() - Method in class com.hfg.bio.seq.Gene
-
- getLocation() - Method in class com.hfg.util.UserImpl
-
- getLockable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getLocked() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getLogger() - Static method in class com.hfg.bio.seq.format.EMBL
-
- getLogger() - Static method in class com.hfg.bio.seq.format.FASTA
-
- getLogger() - Static method in class com.hfg.bio.seq.format.GenBank
-
- getLogger() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBIRemoteTaxonomyDataSource
-
- getLogger() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getLogger() - Static method in class com.hfg.ldap.LDAPClient
-
- getLogger() - Static method in class com.hfg.sql.jdbc.JDBCConnection
-
- getLogger() - Static method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getLogger() - Static method in class com.hfg.sql.SQLUtil
-
- getLogger() - Static method in class com.hfg.util.io.HTTPRemoteFile
-
- getLogger() - Static method in class com.hfg.util.scheduler.Scheduler
-
- getLogger() - Static method in class com.hfg.webapp.filter.auth.LDAP_AuthenticationFilter
-
- getLogger() - Static method in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
- getLogger() - Static method in class com.hfg.xml.msofficexml.OfficeOpenXmlXsd
-
- getLogger() - Static method in class com.hfg.xml.msofficexml.OfficeXML
-
- getLoginTimeout() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getLogWriter() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getLong(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a long in the Java programming language.
- getLong(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a long in the Java programming language.
- getLong(ResultSet, String) - Static method in class com.hfg.sql.SQLUtil
-
- getLong(ResultSet, DatabaseCol) - Static method in class com.hfg.sql.SQLUtil
-
- getLong(ResultSet, int) - Static method in class com.hfg.sql.SQLUtil
-
- getLong(RandomAccessFile, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an long from the current position of the specified RandomAccessFile.
- getLong(ByteSource, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns an long from the current position of the specified ByteSource.
- getMachineName() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getMajorFont() - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontScheme
-
Returns the major font tag.
- getMappedLength() - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Returns the summed length of the query sequence that was successfully mapped.
- getMapping(AminoAcid) - Method in class com.hfg.bio.AminoAcidSet
-
- getMargins() - Method in class com.hfg.graphics.PageSetup
-
- getMassNumber() - Method in class com.hfg.chem.Isotope
-
Returns the mass number (the number of protons plus neutrons) of the isotope.
- getMathContext() - Method in class com.hfg.units.Unit
-
- getMax() - Method in class com.hfg.math.SimpleSampleStats
-
- getMaxCellRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- getMaxConnections() - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
- getMaxCount() - Method in class com.hfg.math.Histogram
-
- getMaxDistanceToLeaf() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getMaxFieldSize() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getMaxFragmentLength() - Method in class com.hfg.bio.DigestSettings
-
- getMaxFragmentMass() - Method in class com.hfg.bio.DigestSettings
-
- getMaxIdentifierLength() - Method in class com.hfg.sql.jdbc.RDBMS
-
- getMaxIdleTimeSec() - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
Returns the maximum amount of time that a connection above the minimum number
of pool connections can sit idle before potentially being closed.
- getMaxInClauseArgs() - Method in class com.hfg.sql.jdbc.RDBMS
-
- getMaxLeaf2LeafEdgeTrail() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getMaxLength() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getMaxLocalAlignmentResults() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getMaxMismatches() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getMaxMismatches() - Method in class com.hfg.util.BYPStringPattern
-
- getMaxMissedCleavages() - Method in class com.hfg.bio.DigestSettings
-
- getMaxOccurs() - Method in class com.hfg.xml.xsd.XsdContent
-
- getMaxQualityScore() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getMaxRows() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getMaxTraceValue() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
Returns the largest trace intensity value - helpful for scaling.
- getMaxWidth() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getMaxXY() - Method in class com.hfg.svg.SvgDefs
-
- getMD5Checksum() - Method in interface com.hfg.bio.seq.BioSequence
-
- getMD5Checksum() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getMD5Checksum() - Method in class com.hfg.bio.seq.Protein
-
- getMean() - Method in class com.hfg.math.SimpleSampleStats
-
- getMean() - Method in class com.hfg.math.StandardNormalDistribution
-
- getMeasurementSystem() - Method in class com.hfg.units.Unit
-
- getMediaQueries() - Method in class com.hfg.css.CSSRule
-
- getMediaType() - Method in class com.hfg.citation.Citation
-
- getMediaType() - Method in class com.hfg.css.CSSMediaQuery
-
- getMeshHeadings() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getMetaData() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getMetaData() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the number, types and properties of
this ResultSet object's columns.
- getMetadata() - Method in class com.hfg.svg.SVG
-
- getMethod() - Method in class com.hfg.html.Form
-
- getMethod() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getMethodName() - Method in class com.hfg.util.StackTraceElementFilter
-
- getMiddleInitial() - Method in class com.hfg.citation.Author
-
- getMiddleName() - Method in class com.hfg.citation.Author
-
- getMillimolarConcFromAbsorbance280(float) - Method in class com.hfg.bio.seq.Protein
-
Returns the concentration (mM) of the protein solution by using the Beer Lambert Law.
- getMilliseconds() - Method in class com.hfg.units.TimeSpan
-
Returns the time span's length in milliseconds.
- getMilliseconds() - Method in class com.hfg.units.TimeUnit
-
Returns the time unit's length in milliseconds.
- getMimeType() - Method in enum com.hfg.image.ImageFormat
-
- getMimeType() - Method in class com.hfg.xml.Doctype
-
- getMin() - Method in class com.hfg.math.SimpleSampleStats
-
- getMinCellRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- getMinConnections() - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
- getMinFragmentLength() - Method in class com.hfg.bio.DigestSettings
-
- getMinFragmentMass() - Method in class com.hfg.bio.DigestSettings
-
- getMinLength() - Method in class com.hfg.bio.seq.NucleicAcidTrimmer
-
- getMinLocalAlignmentLength() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getMinNumOfBackgroundCycles() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getMinOccurs() - Method in class com.hfg.xml.xsd.XsdContent
-
- getMinorFont() - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontScheme
-
Returns the minor font tag.
- getMinQueryMatchLength() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getMinRawScore() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getMinWidth() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getMitochondrialGeneticCode() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getModifiedFiles(File) - Method in class com.hfg.util.FileTreeSnapshot
-
Returns a list of files that are present in the specified file root but not
in the snapshot or files that are present in both the specified file root
and the snapshot but whose last modification dates are different.
- getModifiers() - Method in class com.hfg.ui.ClickEvent
-
- getMoleculeFactory() - Method in class com.hfg.chem.format.ReadableChemFormatBase
-
- getMolType() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getMolType() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getMonoisotopicMass() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getMonoisotopicMass() - Method in class com.hfg.bio.seq.Protein
-
- getMonoisotopicMass(ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
- getMonoisotopicMass() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getMonoisotopicMass() - Method in class com.hfg.chem.Element
-
- getMonoisotopicMass() - Method in interface com.hfg.chem.Matter
-
- getMonoisotopicMass() - Method in class com.hfg.chem.Molecule
-
- getMuscleVersion() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- getName() - Method in class com.hfg.bio.AminoAcidSet
-
- getName() - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- getName() - Method in class com.hfg.bio.Strand
-
- getName() - Method in class com.hfg.chem.Element
-
- getName() - Method in class com.hfg.datetime.DateSortDirection
-
- getName() - Method in class com.hfg.graphics.PaperSize
-
- getName() - Method in class com.hfg.graphics.Track
-
- getName() - Method in class com.hfg.graphics.Track2D
-
- getName() - Method in class com.hfg.html.Form
-
- getName() - Method in class com.hfg.html.Frame
-
- getName() - Method in class com.hfg.html.IFrame
-
- getName() - Method in class com.hfg.html.Img
-
- getName() - Method in class com.hfg.html.InputButton
-
- getName() - Method in class com.hfg.html.InputCheckbox
-
- getName() - Method in class com.hfg.html.InputFile
-
- getName() - Method in class com.hfg.html.InputHidden
-
- getName() - Method in class com.hfg.html.InputPassword
-
- getName() - Method in class com.hfg.html.InputRadio
-
- getName() - Method in class com.hfg.html.InputSubmit
-
- getName() - Method in class com.hfg.html.InputText
-
- getName() - Method in class com.hfg.html.Link
-
- getName() - Method in class com.hfg.html.Meta
-
- getName() - Method in class com.hfg.html.Select
-
- getName() - Method in class com.hfg.html.Textarea
-
- getName() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getName() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getName() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getName() - Method in interface com.hfg.util.io.RemoteFile
-
- getName() - Method in class com.hfg.util.mime.MimeContentDisposition
-
- getName() - Method in interface com.hfg.util.User
-
- getName() - Method in class com.hfg.util.UserImpl
-
- getName() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet
-
- getName() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- getName() - Method in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
Returns the name for this color.
- getName() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- getName() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getName() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getName() - Method in class com.hfg.xml.XMLAttribute
-
- getName() - Method in class com.hfg.xml.xsd.XsdGroup
-
- getNamedItem(String) - Method in class com.hfg.xml.XMLAttributeMap
-
- getNamedItemNS(String, String) - Method in class com.hfg.xml.XMLAttributeMap
-
- getNameMinusExtension(File) - Static method in class com.hfg.util.FileUtil
-
- getNameMinusExtension(String) - Static method in class com.hfg.util.FileUtil
-
Returns the specified file's name without its extension.
- getNameOfBaseType() - Method in class com.hfg.xml.xsd.XsdComplexType
-
- getNamespace() - Method in class com.hfg.xml.XMLAttribute
-
- getNamespace() - Method in class com.hfg.xml.XMLName
-
- getNamespace(String) - Static method in class com.hfg.xml.XMLNamespace
-
- getNamespace(String, String) - Static method in class com.hfg.xml.XMLNamespace
-
- getNamespace() - Method in interface com.hfg.xml.XMLNode
-
- getNamespace() - Method in class com.hfg.xml.XMLTag
-
- getNamespace() - Method in class com.hfg.xml.xsd.XsdElement
-
- getNamespace() - Method in class com.hfg.xml.xsd.XsdType
-
- getNamespaceURI() - Method in class com.hfg.xml.XMLAttribute
-
Convenience method to get the namespace URI
- getNamespaceViaPrefix(String) - Static method in class com.hfg.xml.XMLNamespace
-
- getNCBITaxon() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getNCBITaxon() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getNCharacterStream(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.io.Reader object.
- getNCharacterStream(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a
java.io.Reader object.
- getNClob(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a NClob object
in the Java programming language.
- getNClob(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a NClob object
in the Java programming language.
- getNearestNeighbor(String) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- getNetCharge(double, Protein, S) - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
Estimates the protein's net charge at the specified pH.
- getNetCharge(double, KaSet) - Method in class com.hfg.bio.seq.Protein
-
Estimates the protein's net charge at the specified pH assuming reducing conditions.
- getNetCharge(double, KaSet, ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
Estimates the protein's net charge at the specified pH.
- getNetDivergence(String) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- getNetworkTimeout() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getNextSibling() - Method in class com.hfg.xml.XMLAttribute
-
- getNextSibling() - Method in interface com.hfg.xml.XMLContainer
-
Returns the next sibling XMLContainer of this XMLContainer.
- getNextSibling() - Method in class com.hfg.xml.XMLContainerImpl
-
- getNodeName() - Method in class com.hfg.xml.XMLAttribute
-
Returns the attribute name.
- getNodeType() - Method in class com.hfg.xml.XMLAttribute
-
- getNodeValue() - Method in class com.hfg.xml.XMLAttribute
-
- getNonIdentityCellWithSmallestValue() - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- getNonIdentityCellWithSmallestValue() - Method in class com.hfg.util.collection.SymmetricMatrix
-
- getNonVisualDrawingProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualPictureProperties
-
Returns the non-visual drawing properties tag if one exists or else instantiates a new one.
- getNonVisualDrawingProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualShapeDrawingProperties
-
Returns the non-visual drawing properties (<p:cNvPr>) tag if one exists or else instantiates a new one.
- getNonVisualDrawingProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualShapeDrawingProperties
-
Returns the non-visual drawing properties (<xdr:cNvPr>) tag if one exists or else instantiates a new one.
- getNonVisualPictureDrawingProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualPictureProperties
-
Returns the non-visual drawing properties tag if one exists or else instantiates a new one.
- getNonVisualPictureProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPicture
-
Returns the non-visible picture properties tag if one exists or else instantiates a new one.
- getNonVisualShapeDrawingProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShape
-
Returns the non-visual shape drawing properties (<p:nvSpPr>) tag if one exists or else instantiates a new one.
- getNonVisualShapeDrawingProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
Returns the non-visual shape drawing properties (<xdr:nvSpPr>) tag if one exists or else instantiates a new one.
- getNonVisualShapeProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualShapeDrawingProperties
-
Returns the non-visual shape properties (<p:cNvSpPr>) tag if one exists or else instantiates a new one.
- getNonVisualShapeProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualShapeDrawingProperties
-
Returns the non-visual shape properties (<xdr:cNvSpPr>) tag if one exists or else instantiates a new one.
- getNotations() - Method in class com.hfg.xml.Doctype
-
- getNote() - Method in class com.hfg.citation.Citation
-
- getNString(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a String in the Java programming language.
- getNString(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a String in the Java programming language.
- getNTerminalGapLength() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getNTerminalGroup() - Method in class com.hfg.bio.AminoAcidSet
-
- getNTerminalKa(NTerminalGroup, AminoAcid) - Method in class com.hfg.bio.KaSet
-
- getNumAlignments() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getNumber() - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Returns the number of times this codon was observed in the set of sequences.
- getNumberFormat() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- getNumberFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getNumberFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- getNumberFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- getNumberFormatId() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- getNumberFormats() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getNumberingFormat() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- getNumberingId() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlList
-
- getNumberingPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getNumberingProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Returns the numbering properties tag if one exists or else instantiates a new one.
- getNumBytes() - Method in class com.hfg.util.io.FlowMeterInputStream
-
- getNumChains() - Method in class com.hfg.bio.seq.Protein
-
Recursively calculates the number of chains in the protein.
- getNumDescriptions() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getNumerator() - Method in class com.hfg.units.Unit
-
- getNumericEntity(String) - Method in class com.hfg.xml.parser.AbstractEntities
-
- getNumGaps() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getNumIdentities() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getNumIdentities() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getNumIdentities() - Method in class com.hfg.bio.seq.alignment.PctId
-
- getNumMismatches() - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- getNumMismatches() - Method in class com.hfg.util.BYPStringMatch
-
- getNumOptions() - Method in class com.hfg.html.Select
-
- getNumSequences() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Database
-
- getNumSigFigsForCoordinates() - Static method in class com.hfg.svg.SVG
-
- getNumSteps() - Method in class com.hfg.svg.path.SvgPathCmd
-
- getNumThreads() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getNumUncleavedSites() - Method in class com.hfg.bio.DigestFragment
-
- getObject(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Gets the value of the designated column in the current row
of this ResultSet object as
an Object in the Java programming language.
- getObject(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Gets the value of the designated column in the current row
of this ResultSet object as
an Object in the Java programming language.
- getObject(int, Map<String, Class<?>>) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as an Object
in the Java programming language.
- getObject(String, Map<String, Class<?>>) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as an Object
in the Java programming language.
- getObject(int, Class<T>) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object and will convert from the
SQL type of the column to the requested Java data type, if the
conversion is supported.
- getObject(String, Class<T>) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object and will convert from the
SQL type of the column to the requested Java data type, if the
conversion is supported.
- getObjectValue() - Method in class com.hfg.setting.SettingImpl
-
- getOffset() - Method in class com.hfg.bio.seq.translation.TranslationFrame
-
- getOnBlur() - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- getOnChange() - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- getOnClauses() - Method in class com.hfg.sql.JoinClause
-
- getOnClick() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnDblClick() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOneLetterCode() - Method in class com.hfg.bio.AminoAcid
-
- getOneLetterCode() - Method in class com.hfg.bio.Nucleotide
-
- getOnFocus() - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- getOnKeyDown() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnKeyPress() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnKeyUp() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnMouseDown() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnMouseMove() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnMouseOut() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnMouseOver() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnMouseUp() - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- getOnSelect() - Method in class com.hfg.html.InputText
-
- getOnSelect() - Method in class com.hfg.html.Textarea
-
- getOnSubmit() - Method in class com.hfg.html.Form
-
- getOpenPenalty() - Method in class com.hfg.bio.seq.alignment.GapPenalties
-
- getOptionalSubtagByName(String) - Method in interface com.hfg.xml.XMLContainer
-
Returns the subtag of the specified tag name.
- getOptionalSubtagByName(XMLName) - Method in interface com.hfg.xml.XMLContainer
-
Returns the subtag of the specified tag name.
- getOptionalSubtagByName(XMLName) - Method in class com.hfg.xml.XMLContainerImpl
-
- getOptionalSubtagByName(XMLName, Case) - Method in class com.hfg.xml.XMLContainerImpl
-
- getOptionalSubtagByName(String) - Method in class com.hfg.xml.XMLContainerImpl
-
- getOptionalSubtagByName(String, Case) - Method in class com.hfg.xml.XMLContainerImpl
-
- getOptions() - Method in class com.hfg.html.Select
-
- getOptions() - Method in class com.hfg.xml.xsd.XsdChoice
-
- getOrAddDataBar() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- getOrAddExtension(XMLNamespace, SsmlExtension.URI_Type) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getOrCreateLine() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
Returns the line tag if one exists or else instantiates a new one.
- getOrCreatePresetGeometry() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
Returns the preset geometry tag if one exists or else instantiates a new one.
- getOrCreateStyle() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
Returns the style (<xdr:style>) tag if one exists or else instantiates a new one.
- getOrCreateSubtag(XMLName) - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- getOrCreateTextBody() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
Returns the text body (<xdr:txBody>) tag if one exists or else instantiates a new one.
- getOrCreateTransform() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
Returns the transform (<a:xfrm>) tag if one exists or else instantiates a new one.
- getOrCreateTransform() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
Returns the transform tag if one exists or else instantiates a new one.
- getOrderedRangeMap() - Method in class com.hfg.math.Histogram
-
- getOrderedRanges() - Method in class com.hfg.math.Histogram
-
- getOrganicAverageMass() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Organic mass values used are from:
- getOrganicAverageMass() - Method in class com.hfg.bio.seq.Protein
-
- getOrganicAverageMass(ProteinAnalysisMode) - Method in class com.hfg.bio.seq.Protein
-
- getOrganicAverageMass() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getOrganicAverageMass() - Method in class com.hfg.chem.Element
-
Returns the average mass as estimated from organic sources.
- getOrganicAverageMass() - Method in interface com.hfg.chem.Matter
-
- getOrganicAverageMass() - Method in class com.hfg.chem.Molecule
-
- getOrganismTaxon() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getOrientation() - Method in class com.hfg.graphics.PageSetup
-
- getOutputFile() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getOutputFile() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getOutputFormat() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- getOverallPercent(RK, CK) - Method in class com.hfg.util.collection.NumberMatrix
-
Calculates the percentage of the grand total (total of all cell values) represented by the specified cell.
- getOverallRange() - Method in class com.hfg.math.Histogram
-
- getOwner() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getOwnerDocument() - Method in class com.hfg.xml.XMLAttribute
-
- getP1PrimeSpecificity() - Method in class com.hfg.bio.Protease
-
- getP1Specificity() - Method in class com.hfg.bio.Protease
-
- getP2PrimeSpecificity() - Method in class com.hfg.bio.Protease
-
- getP2Specificity() - Method in class com.hfg.bio.Protease
-
- getP3PrimeSpecificity() - Method in class com.hfg.bio.Protease
-
- getP3Specificity() - Method in class com.hfg.bio.Protease
-
- getP4Specificity() - Method in class com.hfg.bio.Protease
-
- getP5Specificity() - Method in class com.hfg.bio.Protease
-
- getP6Specificity() - Method in class com.hfg.bio.Protease
-
- getPackage() - Method in class com.hfg.util.StackTraceElementFilter
-
- getPackageRelationshipPart() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlDocument
-
- getPadding() - Method in enum com.hfg.sql.WhereClauseGroup.Type
-
- getPadding() - Method in class com.hfg.svg.SvgGenerationSettings
-
- getPageMargins() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSectionProperties
-
Returns the page margins if one exists or else instantiates a new one.
- getPageMargins() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getPages() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getPages() - Method in class com.hfg.citation.Citation
-
- getPageSize() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSectionProperties
-
Returns the page size tag if one exists or else instantiates a new one.
- getPaint() - Method in class com.hfg.graphics.Graphics2DState
-
- getPaint() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getPairedAssemblyComparison() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getPane() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
- getPaperSize() - Method in class com.hfg.graphics.PageSetup
-
- getParagraph() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCell
-
- getParagraphProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
Returns the paragraph properties tag if one exists or else instantiates a new one.
- getParagraphProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyleProperties
-
- getParagraphProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDocDefaults
-
Returns the paragraph properties tag if one exists or else instantiates a new one.
- getParagraphProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- getParameter(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getParameterMap() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getParameterNames() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getParameterValues(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getParent() - Method in class com.hfg.bio.seq.Protein
-
Protein objects can be recursively composed of other Protein objects that represent
chains or subunits and this method returns the Protein object that contains this Protein object
or null if this Protein object is the top object.
- getParentCol() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.docx.part.DocxPart
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.docx.part.WmlContentPart
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSubDoc
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXMLTag
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.xlsx.part.XlsxPart
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXMLTag
-
- getParentDoc() - Method in class com.hfg.xml.msofficexml.xlsx.Workbook
-
- getParentDrawingPart() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.WorksheetDrawing
-
- getParentEdge() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
Returns the root-facing edge.
- getParentLogger() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getParentNode() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getParentNode() - Method in class com.hfg.xml.XMLAttribute
-
- getParentNode() - Method in interface com.hfg.xml.XMLContainer
-
Returns the parent XMLContainer of this XMLContainer.
- getParentNode() - Method in class com.hfg.xml.XMLContainerImpl
-
- getParentOfficeXMLPart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXMLTag
-
- getParentTablePart() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- getParentTaxon() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getParentTaxonId() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getParentThemePart() - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlTheme
-
- getParentWorksheetPart() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlDrawingPart
-
- getParentWorksheetPart() - Method in class com.hfg.xml.msofficexml.xlsx.part.TablePart
-
- getParentWorksheetPart() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getParseExceptions() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getParseExceptions() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getParser() - Method in class com.hfg.xml.parser.SaxyParser
-
- getParser() - Method in class com.hfg.xml.parser.XMLTagReader
-
- getPart(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getPart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlBody
-
- getPart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlContentContainer
-
- getPart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlFooter
-
- getPart() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlHeader
-
- getPart() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- getParts() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getPassword() - Method in class com.hfg.security.LoginCredentials
-
- getPasswordString() - Method in class com.hfg.security.LoginCredentials
-
- getPatentData() - Method in class com.hfg.citation.Citation
-
- getPath() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getPath() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getPath() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getPath() - Method in interface com.hfg.util.io.RemoteFile
-
- getPathCommands() - Method in class com.hfg.svg.SvgPath
-
- getPathInfo() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getPathTranslated() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getPattern() - Method in class com.hfg.bio.seq.pattern.NucleotidePatternMatch
-
- getPattern() - Method in class com.hfg.bio.seq.pattern.ProteinPatternMatch
-
- getPattern() - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- getPatternString() - Method in class com.hfg.util.BYPStringPattern
-
- getPatternType() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- getPctIdentity() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getPctIdentity() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getPctIdentityMatrix() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
Returns a percent identity matrix adjusted for any terminal gaps.
- getPenalizeTerminalGaps(PairwiseSeqType, PairwiseSeqTerminus) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- getPenalizeTerminalGaps(PairwiseSeqType, PairwiseSeqTerminus) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getPercentExtinctionCoeff() - Method in class com.hfg.bio.seq.Protein
-
Returns the estimated mass attenuation coefficient (ml mg-1 cm-1) at A280.
- getPercentIdentity() - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Returns the percent identity of the query sequence to the mapping target for the
region(s) mapped.
- getPercentOfCol(RK, CK) - Method in class com.hfg.util.collection.NumberMatrix
-
Calculates the percentage of the total column value represented by the specified cell.
- getPercentOfRow(RK, CK) - Method in class com.hfg.util.collection.NumberMatrix
-
Calculates the percentage of the total row value represented by the specified cell.
- getPhoneNumber() - Method in interface com.hfg.util.User
-
- getPhoneNumber() - Method in class com.hfg.util.UserImpl
-
- getPhysicalProperty(PhysicalProperty) - Method in class com.hfg.chem.Molecule
-
- getPic() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicData
-
Returns the pic tag if one exists or else instantiates a new one.
- getPictureLocks() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualPictureDrawingProperties
-
Returns the picLocks tag if one exists or else instantiates a new one.
- getpKa() - Method in class com.hfg.chem.IonizableGroup
-
- getPlaceOfPublication() - Method in class com.hfg.citation.Citation
-
- getPlural() - Method in class com.hfg.units.Unit
-
- getPluralAbbrev() - Method in class com.hfg.units.Unit
-
- getPointList() - Method in class com.hfg.svg.SvgPolygon
-
- getPointList() - Method in class com.hfg.svg.SvgPolyline
-
- getPoints() - Method in class com.hfg.svg.SvgPolygon
-
- getPoints() - Method in class com.hfg.svg.SvgPolyline
-
- getPoolConnection(StackTraceElement) - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getPort() - Method in class com.hfg.sql.jdbc.JDBCServer
-
Returns the port to use to connect to the database via JDBC.
- getPort() - Method in class com.hfg.util.io.ProxyConfig
-
- getPosition() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
- getPosition() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
- getPositionFreqMatrix() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getPositionFreqMatrix(PositionalFrequencyMatrix.Flag[]) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getPositionKeys() - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getPositionResidues(int) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getPositionResidueSet(int) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getPositionTotal(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
Returns the number of sequences with a residue and not a gap at the specified position.
- getPow() - Method in class com.hfg.units.SubUnit
-
- getPow() - Method in class com.hfg.units.Unit
-
- getPrecedingResidue() - Method in class com.hfg.bio.DigestFragment
-
- getPreferredName() - Method in interface com.hfg.util.User
-
- getPreferredName() - Method in class com.hfg.util.UserImpl
-
- getPrefix() - Method in class com.hfg.units.SI_ScalingFactor
-
- getPrefix() - Method in class com.hfg.xml.XMLAttribute
-
The namespace prefix of this attribute, or null if it is unspecified.
- getPrefix() - Method in class com.hfg.xml.XMLNamespace
-
- getPreserveRequestedURL() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getPresetGeometry() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShapeProperties
-
Returns the preset geometry tag if one exists or else instantiates a new one.
- getPreviousSibling() - Method in class com.hfg.xml.XMLAttribute
-
- getPreviousSibling() - Method in interface com.hfg.xml.XMLContainer
-
Returns the previous sibling XMLContainer of this XMLContainer.
- getPreviousSibling() - Method in class com.hfg.xml.XMLContainerImpl
-
- getPrincipalCredentials() - Method in class com.hfg.ldap.LDAP_Config
-
- getPrincipalFieldName() - Method in class com.hfg.ldap.LDAP_Config
-
- getPriority() - Method in class com.hfg.util.PrioritizedFutureTask
-
- getProbability(double) - Method in class com.hfg.math.StandardNormalDistribution
-
- getProbabilityThreshold() - Method in class com.hfg.bio.seq.NucleicAcidTrimmer
-
- getProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextRun
-
Returns the run properties tag if one exists or else instantiates a new one.
- getProperties(WmlTableStyleProperties.Type) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyle
-
Returns the table style properties tag if one exists or else instantiates a new one.
- getProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraph
-
Returns the paragraph properties tag if one exists or else instantiates a new one.
- getProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTag
-
Returns the sdt properties tag if one exists or else instantiates a new one.
- getProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRun
-
Returns the run properties tag if one exists or else instantiates a new one.
- getProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTextBody
-
- getProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRun
-
- getProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbook
-
- getProperties() - Method in class com.hfg.xml.msofficexml.xlsx.Workbook
-
- getProperty() - Method in class com.hfg.css.CSSDeclaration
-
- getProperty(String) - Method in class com.hfg.xml.parser.SaxyParser
-
- getPrositePattern() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getPrositePatternPositions() - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- getProteases() - Method in class com.hfg.bio.DigestSettings
-
- getProtein() - Method in class com.hfg.bio.seq.ProteinDigest
-
- getProteinAnalysisMode() - Method in class com.hfg.bio.proteinproperty.SimpleProteinPropertyCalcSettings
-
- getProtocol() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getProtocol() - Method in class com.hfg.util.io.FileSystemRemoteFileLister
-
- getProtocol() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getProtocol() - Method in class com.hfg.util.io.HTTPRemoteFileLister
-
- getProtocol() - Method in interface com.hfg.util.io.RemoteFileLister
-
- getProtocol() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getProtonatedForm() - Method in class com.hfg.chem.IonizableGroup
-
- getProxyHost() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getProxyPassword() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getProxyPort() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getProxyUser() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getPSSM() - Method in class com.hfg.bio.seq.alignment.AlignedSubject
-
- getPublicationDate() - Method in class com.hfg.citation.PatentData
-
- getPublicationNum() - Method in class com.hfg.citation.PatentData
-
- getPublicId() - Method in class com.hfg.xml.Doctype
-
The public identifier of the external subset.
- getPublisher() - Method in class com.hfg.citation.Citation
-
- getPubmedId() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getPubMedId() - Method in class com.hfg.bio.seq.format.SeqCitation
-
- getPValue() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getPValue() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getQC_Errors() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
3500/3500xl specific: Returns any QC errors as a concatenated comma-separated string.
- getQC_Warnings() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
3500/3500xl specific: Returns any QC warnings as a concatenated comma-separated string.
- getQualifiedName() - Method in class com.hfg.sql.table.DatabaseCol
-
- getQualifiedName() - Method in class com.hfg.sql.table.DatabaseTable
-
- getQualifiedName() - Method in class com.hfg.xml.XMLAttribute
-
- getQualifiedName() - Method in class com.hfg.xml.XMLName
-
- getQualifiedName() - Method in class com.hfg.xml.xsd.XsdElement
-
- getQualifiedName() - Method in class com.hfg.xml.xsd.XsdType
-
- getQualifiedTagName() - Method in class com.hfg.xml.XMLTag
-
- getQualifiedTypeName() - Method in class com.hfg.xml.xsd.XsdElement
-
- getQualifiers() - Method in interface com.hfg.bio.seq.format.feature.SeqFeature
-
- getQualifiers(String) - Method in interface com.hfg.bio.seq.format.feature.SeqFeature
-
- getQualifiers() - Method in class com.hfg.bio.seq.format.feature.SeqFeatureImpl
-
- getQualifiers(String) - Method in class com.hfg.bio.seq.format.feature.SeqFeatureImpl
-
- getQualifiers() - Method in class com.hfg.citation.ncbi.MeshHeading
-
- getQualityScores() - Method in class com.hfg.bio.seq.SeqQualityScores
-
- getQuantity(Matter) - Method in class com.hfg.chem.solution.AqueousSolution
-
- getQuantity() - Method in class com.hfg.chem.solution.MixtureComponent
-
- getQuantityType() - Method in class com.hfg.units.Unit
-
- getQueryAlignmentType() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getQueryBioSequenceType() - Method in enum com.hfg.bio.seq.alignment.blast.BLAST_Program
-
- getQueryInternalGapLength() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
Returns the total number of non-terminal query gap positions where the subject is not a gap.
- getQueryLength() - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Returns the length of the query sequence that was mapped.
- getQueryString() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getQueryTimeout() - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- getQV20_Score() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
3500/3500xl specific: Returns the QV20+ value.
- getQV20_Status() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
3500/3500xl specific: Returns the QV20 status as one of 'Pass', 'Fail', or 'Check'.
- getR() - Method in class com.hfg.svg.SvgCircle
-
- getRandomListItem(List<T>) - Static method in class com.hfg.util.collection.CollectionUtil
-
- getRange() - Method in class com.hfg.graphics.ScaleColorist
-
- getRange() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlConditionalFormatting
-
- getRangeForUnicodeBlock(Character.UnicodeBlock) - Static method in class com.hfg.util.StringUtil
-
- getRangeLabelFormatString() - Method in class com.hfg.math.HistogramSvgSettings
-
- getRangeMap() - Method in class com.hfg.graphics.RangeColorist
-
- getRawMatrix() - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- getRawNumbers() - Method in class com.hfg.svg.path.SvgPathCmd
-
- getRawValue(Protein, SimpleProteinPropertyCalcSettings) - Method in class com.hfg.bio.proteinproperty.ExtinctionCoeff
-
- getRDBMS() - Method in class com.hfg.sql.jdbc.JDBCServer
-
Returns the relational database management system associated with the database server.
- getRDBMS() - Method in class com.hfg.sql.table.DatabaseTable
-
- getReader() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRealPath(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRecognitionSequence() - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- getRef(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Ref object
in the Java programming language.
- getRef(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a Ref object
in the Java programming language.
- getRef() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- getRef() - Method in class com.hfg.xml.xsd.XsdElement
-
- getReference() - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- getReferences() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getReferences() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getReferences() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getReferralHandling() - Method in class com.hfg.ldap.LDAP_Config
-
- getReferralHandling() - Method in class com.hfg.ldap.LDAPClient
-
- getRefSeqCategory() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getRelationshipPart() - Method in class com.hfg.xml.msofficexml.docx.part.DocumentPart
-
- getRelationshipPart() - Method in class com.hfg.xml.msofficexml.docx.part.FooterPart
-
- getRelationshipPart() - Method in class com.hfg.xml.msofficexml.docx.part.HeaderPart
-
- getRelationshipPart() - Method in class com.hfg.xml.msofficexml.part.OfficeXMLContentPart
-
- getRelationToTypeMaterial() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getRelativePath(File, File) - Static method in class com.hfg.util.FileUtil
-
Returns the relative file path to inFile1 with respect to inFile2.
- getRelativePath(File) - Method in class com.hfg.xml.msofficexml.part.OfficeOpenXmlRelationshipPart
-
- getReleaseDate() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getRemark() - Method in class com.hfg.bio.seq.format.SeqCitation
-
- getRemoteAddr() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRemoteFileLister(String) - Static method in class com.hfg.util.io.RemoteFileListerFactory
-
- getRemoteFileLister(String, List<RemoteFileFilter>) - Static method in class com.hfg.util.io.RemoteFileListerFactory
-
- getRemoteHost() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRemotePort() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRemoteUser() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRenderer() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getRenderingHint(RenderingHints.Key) - Method in class com.hfg.graphics.SvgGraphics2D
-
- getRenderingHints() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getRepository() - Method in class com.hfg.citation.Citation
-
- getRequestDispatcher(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRequestedPath() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getRequestedPath() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getRequestedPath() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getRequestedPath() - Method in interface com.hfg.util.io.RemoteFile
-
The requested path may differ from getPath() if the requested path was a symbolic link.
- getRequestedSessionId() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRequestURI() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRequestURL() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getRequiredSubtagById(String) - Method in class com.hfg.xml.XMLContainerImpl
-
- getRequiredSubtagById(String, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
- getRequiredSubtagByName(String) - Method in interface com.hfg.xml.XMLContainer
-
Returns the subtag of the specified tag name.
- getRequiredSubtagByName(XMLName) - Method in interface com.hfg.xml.XMLContainer
-
Returns the subtag of the specified tag name.
- getRequiredSubtagByName(XMLName) - Method in class com.hfg.xml.XMLContainerImpl
-
- getRequiredSubtagByName(String) - Method in class com.hfg.xml.XMLContainerImpl
-
- getResidueChars() - Method in class com.hfg.bio.AminoAcidSet
-
- getResidueComposition() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getResidueComposition() - Method in class com.hfg.bio.seq.Protein
-
- getResidueIndex(char) - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- getResidueIndicesForSequence(String) - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- getResidueKeys() - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getResidues() - Method in class com.hfg.bio.AAGroup
-
- getResidues(Integer) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
- getResidues(Integer, Float) - Method in class com.hfg.bio.seq.PositionalFrequencyMatrix
-
Retrieves the residues at the specified position that are represented above
the specified minimum fraction.
- getResizable() - Method in class com.hfg.html.Frame
-
- getResizable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getResolutionInDPI() - Static method in class com.hfg.graphics.units.GfxSizeImpl
-
- getRestrictionEnzyme() - Method in class com.hfg.bio.molbio.RestrictionSite
-
- getResultSet() - Method in class com.hfg.sql.table.field.SQLArray
-
- getResultSet(Map<String, Class<?>>) - Method in class com.hfg.sql.table.field.SQLArray
-
- getResultSet(long, int) - Method in class com.hfg.sql.table.field.SQLArray
-
- getResultSet(long, int, Map<String, Class<?>>) - Method in class com.hfg.sql.table.field.SQLArray
-
- getRetrievedByDefault() - Method in class com.hfg.sql.table.DatabaseCol
-
- getReturnOnlyMostRecentFile() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getReturnType() - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
Returns the Number data type returned by the calculate() method.
- getReturnType() - Method in interface com.hfg.bio.proteinproperty.SingleValueProteinProperty
-
- getReverseComplementSequence() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseComplementSequence(String) - Static method in class com.hfg.bio.seq.SeqUtil
-
- getReverseComplementSequenceReader() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseComplementSequenceStream() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseSequence() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseSequenceReader() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseSequenceStream() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getReverseSequenceStream() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getReverseStrandImageHeight() - Method in class com.hfg.graphics.Track
-
- getReverseStrandImageHeight() - Method in class com.hfg.graphics.Track2D
-
- getRevisionDate() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getRevisionDate() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getRevStrandCutSiteIndices() - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
Returns the reverse strand cut site indices relative to the start of the motif.
- getRight() - Method in class com.hfg.bio.seq.Exon
-
- getRight() - Method in class com.hfg.bio.seq.Gene
-
The rightmost basepair of the gene (the end location if the gene is on the
forward strand or the start location if the gene is on the reverse strand).
- getRight() - Method in class com.hfg.graphics.Gene2D
-
The rightmost basepair of the gene (the end location if the gene is on the
forward strand or the start location if the gene is on the reverse strand).
- getRight() - Method in class com.hfg.graphics.PageMargins
-
- getRight() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getRight() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getRootedTreeDistance() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getRootException(Throwable) - Static method in class com.hfg.util.StackTraceUtil
-
Returns the root exception from an exception.
- getRootNode() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getRootNode() - Method in class com.hfg.html.HTMLDoc
-
- getRootNode() - Method in class com.hfg.svg.SvgDoc
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.part.ThemePart
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlDrawingPart
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlThemePart
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.xlsx.part.TablePart
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorkbookPart
-
- getRootNode() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetPart
-
- getRootNode() - Method in class com.hfg.xml.parser.XMLTagReader
-
- getRootNode() - Method in class com.hfg.xml.XMLBasedDoc
-
- getRootTag() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getRow() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the current row number.
- getRow(Connection, SQLQuery) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRow(Connection, List<SQLClause>) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRow(Connection, SQLClause) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRow(RK) - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- getRow(RK) - Method in class com.hfg.util.collection.SparseMatrix
-
- getRowById(Connection, Long) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRowById(Connection, Integer) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRowByRowIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- getRowCount(Connection, DatabaseTable, WhereClause) - Static method in class com.hfg.sql.SQLUtil
-
A convenience method for getting a count of rows that meet a specific criteria.
- getRowCount(Connection, DatabaseTable, Collection<SQLClause>) - Static method in class com.hfg.sql.SQLUtil
-
A convenience method for getting a count of rows that meet a specific criteria.
- getRowCount(Connection) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRowCount(Connection, SQLClause) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRowCount(Connection, Collection<SQLClause>) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRowData(String) - Method in class com.hfg.util.collection.DataTable
-
- getRowId(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row of this
ResultSet object as a java.sql.RowId object in the Java
programming language.
- getRowId(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row of this
ResultSet object as a java.sql.RowId object in the Java
programming language.
- getRowIndex() - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
Returns the row index as a 1-based number.
- getRowIndex() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- getRowKey() - Method in class com.hfg.util.collection.MatrixCell
-
- getRowProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRow
-
Returns the table row properties tag if one exists or else instantiates a new one.
- getRows() - Method in class com.hfg.html.Frameset
-
- getRows() - Method in class com.hfg.html.Table
-
- getRows() - Method in class com.hfg.html.TBody
-
- getRows() - Method in class com.hfg.html.Textarea
-
- getRows() - Method in class com.hfg.html.TFoot
-
- getRows() - Method in class com.hfg.html.THead
-
- getRows(Connection) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows(Connection, List<SQLClause>) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows(Connection, SQLClause) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows(Connection, SQLClause...) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows(Connection, SQLQuery) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows(Connection, SQLQuery, SQLStatementOptions) - Method in class com.hfg.sql.table.DatabaseTable
-
- getRows() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTable
-
Returns the table rows.
- getRows() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- getRowSpan() - Method in class com.hfg.html.Td
-
- getRowSpan() - Method in class com.hfg.html.Th
-
- getRowTotal(RK) - Method in class com.hfg.util.collection.NumberMatrix
-
- getRsrcFile(String, Class) - Static method in class com.hfg.util.TestUtil
-
- getRsrcStream(String, Class) - Static method in class com.hfg.util.TestUtil
-
- getRunDate() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
Returns the run properties tag if one exists or else instantiates a new one.
- getRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Returns the run properties tag if one exists or else instantiates a new one.
- getRx() - Method in class com.hfg.svg.SvgRect
-
- getRy() - Method in class com.hfg.svg.SvgRect
-
- getSampleComment() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getSampleName() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getSampleSize() - Method in class com.hfg.math.SimpleSampleStats
-
- getSampleStandardDeviation() - Method in class com.hfg.math.SimpleSampleStats
-
- getSampleStandardDeviation() - Method in class com.hfg.math.StandardNormalDistribution
-
- getSampleTrackingID() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getScaledWidthInPixels() - Method in class com.hfg.graphics.Gene2D
-
- getScalePaddingTop() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getScaleTickHeight() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getScalingFactor() - Method in class com.hfg.units.SI_ScalingFactor
-
- getScalingFactor() - Method in class com.hfg.units.SubUnit
-
- getScalingFactor() - Method in class com.hfg.xml.msofficexml.part.ImagePart
-
Returns the scaling factor that was used (for informational purposes).
- getSchedule() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- getScheduledJobs() - Method in class com.hfg.util.scheduler.Scheduler
-
- getSchema() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getSchema() - Method in class com.hfg.sql.table.DatabaseTable
-
- getScheme() - Method in class com.hfg.bio.seq.format.FASTQ
-
- getScheme() - Method in class com.hfg.bio.seq.SeqQualityScores
-
- getScheme() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getScientificName() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getScientificName() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
- getScore() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getScore() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getScoreCaseInsensitive() - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- getScoreCaseInsensitive() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getScoring() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
Returns the alignment scoring object.
- getScoringBoundaries() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getScrolling() - Method in class com.hfg.html.Frame
-
- getSecondAtom() - Method in class com.hfg.chem.CovalentBond
-
- getSecondControlPoint() - Method in class com.hfg.svg.path.SvgPathCurveToCmd
-
- getSectionProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlBody
-
- getSectionProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Returns the section properties tag if one exists or else instantiates a new one.
- getSelectors() - Method in class com.hfg.css.CSSRule
-
- getSeq() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getSeqFormat() - Method in class com.hfg.bio.seq.format.BufferedSeqReader
-
- getSeqIdNum() - Method in class com.hfg.citation.PatentData
-
- getSeqLength() - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- getSeqLocation() - Method in class com.hfg.bio.DigestFragment
-
- getSeqLocation() - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- getSeqLocation() - Method in class com.hfg.bio.seq.format.SeqCitation
-
- getSeqLocation() - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- getSeqLocation() - Method in interface com.hfg.bio.seq.pattern.SeqPatternMatcher
-
- getSeqMappingCoverage() - Method in class com.hfg.bio.seq.Gene
-
- getSeqMappingCoverage() - Method in class com.hfg.graphics.Gene2D
-
- getSeqQualityScores() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getSeqRepositoryDivision() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getSeqRepositoryDivision() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getSeqTopology() - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- getSeqTopology() - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- getSeqType() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Database
-
- getSeqType() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_DatabaseGroup
-
- getSequence(String) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getSequence() - Method in interface com.hfg.bio.seq.BioSequence
-
- getSequence() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getSequence() - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- getSequence() - Method in class com.hfg.sql.table.DatabaseCol
-
- getSequenceReader() - Method in interface com.hfg.bio.seq.BioSequence
-
- getSequenceReader() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getSequences() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getSequenceStream() - Method in interface com.hfg.bio.seq.BioSequence
-
- getSequenceStream() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getServer() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getServerName() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getServerPort() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getServerURL() - Method in class com.hfg.ldap.LDAP_Config
-
- getServerURL() - Method in class com.hfg.ldap.LDAPClient
-
- getServletContext() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getServletPath() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getSession(boolean) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getSession() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getSetFields() - Method in class com.hfg.sql.SQLUpdate
-
- getSettings() - Method in class com.hfg.bio.seq.alignment.blast.BLAST
-
- getSettings() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAligner
-
- getSettings() - Method in class com.hfg.bio.seq.alignment.muscle.Muscle
-
- getSettings() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAligner
-
- getSettings() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getSettings() - Method in class com.hfg.bio.seq.ProteinDigest
-
- getSettings() - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- getSettingsPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getSHA1Checksum() - Method in interface com.hfg.bio.seq.BioSequence
-
- getSHA1Checksum() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getSHA1Checksum() - Method in class com.hfg.bio.seq.Protein
-
- getShading() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- getShading() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- getShading() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- getShading() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
- getShading() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- getShape() - Method in class com.hfg.bio.glyco.Monosaccharide
-
- getShapeAdjustValues() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPresetGeometry
-
Returns the shape adjusted values (avLst) tag if one exists or else instantiates a new one.
- getShapeProperties() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPicture
-
Returns the shape properties tag if one exists or else instantiates a new one.
- getShapeProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
Returns the shape properties (<xdr:spPr>) tag if one exists or else instantiates a new one.
- getSharedStringsPart() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getSheetData() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getSheetFormatProperties() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getSheetIndex() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetPart
-
- getSheetViews() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- getShell() - Method in class com.hfg.util.Executor
-
Returns the shell to be used for command execution.
- getShort(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a short in the Java programming language.
- getShort(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a short in the Java programming language.
- getShort(byte[]) - Static method in class com.hfg.util.ByteUtil
-
Returns a short from the first 2 bytes of the given byte array.
- getShort(byte[], int) - Static method in class com.hfg.util.ByteUtil
-
Returns a short from the first 2 bytes of the given byte array.
- getShort(byte[], int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a short from the first 2 bytes of the given byte array.
- getShortArray(byte[], int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a short[] derived from the specified byte[].
- getShortArray(RandomAccessFile, int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a short[] derived from the specified RandomAccessFile.
- getShortArray(ByteSource, int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a short[] derived from the specified ByteSource.
- getShortestEdge() - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
Returns the Edge with the shortest distance.
- getShortName() - Method in class com.hfg.bio.CTerminalGroup
-
- getShortName() - Method in class com.hfg.bio.NTerminalGroup
-
- getShortName() - Method in class com.hfg.math.RelationalOperator
-
- getShowBranchLengthTraversalLimit() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getShowId() - Method in class com.hfg.graphics.Gene2D
-
- getShowInkAnnotation() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- getShowScale() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getSidechainKas() - Method in class com.hfg.bio.AminoAcid
-
Returns any defined sidechain Ka's.
- getSize() - Method in class com.hfg.html.Select
-
- getSize() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getSize() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getSize() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getSize() - Method in interface com.hfg.util.io.RemoteFile
-
- getSize() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getSnapshotDate() - Method in class com.hfg.util.FileTreeSnapshot
-
- getSoftMasking() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getSortable() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getSortedCellIndex() - Method in class com.hfg.util.collection.MatrixCell
-
- getSortedEdges(String) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
Returns the Edges for the specified sequence sorted shortest to longest.
- getSortType() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getSortType() - Method in class com.hfg.javascript.ext.ExtModelField
-
- getSource() - Method in class com.hfg.citation.Citation
-
- getSpacing() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- getSpacing() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- getSpecies() - Method in class com.hfg.bio.seq.Gene
-
- getSpecies() - Method in class com.hfg.graphics.Gene2D
-
- getSpeciesCode() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
- getSpeciesTaxon() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getSpecifiedBondOrder() - Method in class com.hfg.chem.CovalentBond
-
- getSQLDateFormat(int) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
Deprecated.
- getSQLDateFormat(int) - Method in class com.hfg.sql.jdbc.RDBMS
-
Deprecated.
- getSQLDateFormatter(int) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
- getSQLDateFormatter(int) - Method in class com.hfg.sql.jdbc.RDBMS
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseBinaryField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseBooleanField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseCharField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseDateField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseField
-
- getSQLValue() - Method in class com.hfg.sql.table.field.DatabaseStringField
-
- getSQLXML(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row of
this ResultSet as a
java.sql.SQLXML object in the Java programming language.
- getSQLXML(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row of
this ResultSet as a
java.sql.SQLXML object in the Java programming language.
- getSrc() - Method in class com.hfg.html.Frame
-
- getSrc() - Method in class com.hfg.html.IFrame
-
- getSrc() - Method in class com.hfg.html.Img
-
- getSrcChainId() - Method in class com.hfg.bio.DigestFragment
-
- getSrcRect() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlBlipFill
-
Returns the source rectangle tag if one exists or else instantiates a new one.
- getStandardNormalDistribution() - Method in class com.hfg.math.SimpleSampleStats
-
- getStart() - Method in class com.hfg.math.IntRange
-
Deprecated.
- getStart() - Method in class com.hfg.math.Range
-
- getStartingPoint() - Method in class com.hfg.svg.path.SvgPathCmd
-
- getStartLocation() - Method in class com.hfg.bio.seq.Exon
-
- getStartLocation() - Method in class com.hfg.bio.seq.Gene
-
Basepair location of the start of the gene.
- getStartLocation() - Method in class com.hfg.graphics.Gene2D
-
Basepair location of the start of the gene.
- getStartTag() - Method in class com.hfg.xml.XMLTag
-
- getState() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Returns the split state of the pane.
- getStatement() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the Statement object that produced this
ResultSet object.
- getStats() - Method in class com.hfg.math.Histogram
-
- getStatus() - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- getStatusReport() - Method in class com.hfg.sql.jdbc.JDBCConnectionPool
-
- getStdErr() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- getStdErr() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- getSTDERR() - Method in class com.hfg.util.Executor
-
Returns the STDERR output produced by the executed command.
- getStdOut() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- getStdOut() - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- getSTDOUT() - Method in class com.hfg.util.Executor
-
Returns the STDOUT output produced by the executed command.
- getStrand() - Method in class com.hfg.bio.seq.Exon
-
- getStrand() - Method in class com.hfg.bio.seq.Gene
-
- getStrand() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getStrand() - Method in class com.hfg.bio.seq.pattern.NucleotidePatternMatch
-
- getStrand() - Method in class com.hfg.bio.seq.translation.TranslationFrame
-
- getStrand() - Method in class com.hfg.graphics.Gene2D
-
- getStrandsToSearch() - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- getStretch() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlBlipFill
-
Returns the stretch tag if one exists or else instantiates a new one.
- getString(int) - Method in class com.hfg.javascript.JsArray
-
- getString(String) - Method in class com.hfg.javascript.JsObjMap
-
- getString(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a String in the Java programming language.
- getString(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a String in the Java programming language.
- getString() - Method in class com.hfg.util.BYPStringMatch
-
- getString(byte[], int, int, ByteOrder) - Static method in class com.hfg.util.ByteUtil
-
Returns a string from the bytes.
- getString(InputStream, int) - Static method in class com.hfg.util.ByteUtil
-
Returns a string from the bytes.
- getString(RandomAccessFile, int) - Static method in class com.hfg.util.ByteUtil
-
Returns a String from the current position of the specified RandomAccessFile.
- getString(ByteSource, int) - Static method in class com.hfg.util.ByteUtil
-
Returns a String from the current position of the specified ByteSource.
- getString(int) - Method in class com.hfg.xml.msofficexml.xlsx.part.SharedStringsPart
-
- getStringBaselineRect(String, Font) - Static method in class com.hfg.graphics.TextUtil
-
Calculate the bounding rectangle for the specified string and font where the bottom of the
rectangle is at the baseline and using the default of 96 ppi.
- getStringBaselineRect(String, Font, DisplayPPI) - Static method in class com.hfg.graphics.TextUtil
-
Calculate the bounding rectangle for the specified string and font where the bottom of the
rectangle is at the baseline.
- getStringFormat() - Method in class com.hfg.graphics.DataStylist
-
- getStringFormat() - Method in class com.hfg.graphics.DataStylistGenerator
-
- getStringRect(String, Font) - Static method in class com.hfg.graphics.TextUtil
-
Calculate the bounding rectangle for the specified string and font using the default of 96 ppi.
- getStringRect(String, Font, DisplayPPI) - Static method in class com.hfg.graphics.TextUtil
-
Calculate the bounding rectangle for the specified string and font.
- getStringValue() - Method in interface com.hfg.setting.Setting
-
- getStringValue() - Method in class com.hfg.setting.SettingImpl
-
- getStringValue() - Method in class com.hfg.sql.table.field.DatabaseBinaryField
-
- getStringValue() - Method in class com.hfg.sql.table.field.DatabaseField
-
- getStroke() - Method in class com.hfg.graphics.Graphics2DState
-
- getStroke() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getStyle() - Method in class com.hfg.html.Head
-
Returns the style content.
- getStyle() - Method in class com.hfg.html.HTMLTag
-
- getStyle(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorkbook
-
- getStyle(String) - Method in class com.hfg.xml.msofficexml.docx.part.StylesPart
-
- getStyleFormat() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- getStyleFormat(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- getStylesPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getStylesPart() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getSubalignment(int) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getSubalignment(int, int) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getSubcloneName() - Method in class com.hfg.bio.seq.Clone
-
- getSubjectAlignmentType() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getSubjectAlternateNames(X509Certificate) - Static method in class com.hfg.cert.CertificateUtil
-
- getSubjectTemplateMode() - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getSubkeywords() - Method in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- getSubmissionDate() - Method in class com.hfg.bio.seq.format.SeqCitation
-
- getSubmissionRecordInfo() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getSubmissionTime() - Method in class com.hfg.util.PrioritizedFutureTask
-
- getSubmitter() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getSubnodeCount() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getSubSequence(SeqLocation) - Method in interface com.hfg.bio.seq.BioSequence
-
- getSubSequence(SeqLocation) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getSubSequenceReader(SeqLocation) - Method in interface com.hfg.bio.seq.BioSequence
-
- getSubSequenceReader(SeqLocation) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getSubstance() - Method in class com.hfg.chem.solution.MixtureComponent
-
- getSubstitutionMatrix(BioSequenceType) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- getSubstitutionMatrix(BioSequenceType) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- getSubtagByAttribute(XMLName, String) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns the subtag with the specified attribute name and value.
- getSubtagByAttribute(String, String) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns the subtag with the specified attribute name and value.
- getSubtagIndexMap() - Method in class com.hfg.xml.xsd.XsdElement
-
- getSubtags() - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags on this object.
- getSubtags() - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubtagsByAttribute(XMLName, String) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags with the specified attribute name and value.
- getSubtagsByAttribute(String, String) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags with the specified attribute name and value.
- getSubtagsByAttribute(String, Pattern) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags with the specified attribute name and value.
- getSubtagsByAttribute(String, String, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags with the specified attribute name and value
(if recursion is off) or at any level below this object (if recursion is on).
- getSubtagsByAttribute(String, Pattern, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags with the specified attribute name and value.
- getSubtagsByClass(Class<T>) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags of the specified Java Class on this XMLTag object
The same as getSubtagsByClass(inClassName, Recursion.OFF)
- getSubtagsByClass(Class<T>, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
Returns a List of all subtags of the specified Java Class on this XMLTag object
(if recursion is off) or at any level below this object (if recursion is on).
- getSubtagsByName(String) - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags with the specified tag name on this XMLTag object.
- getSubtagsByName(XMLName) - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags with the specified tag name on this XMLTag object.
- getSubtagsByName(String, Recursion) - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags with the specified tag name on this XMLTag object.
- getSubtagsByName(XMLName, Recursion) - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags with the specified tag name on this XMLTag object.
- getSubtagsByName(XMLName) - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubtagsByName(String) - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubtagsByName(XMLName, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubtagsByName(String, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubtagsByName(String, Case, Recursion) - Method in class com.hfg.xml.XMLContainerImpl
-
- getSubUnits() - Method in class com.hfg.units.Unit
-
- getSumForKey(K) - Method in class com.hfg.util.collection.SymmetricNumberMatrix
-
- getSuperClassname() - Method in class com.hfg.util.BasicClassFileInfo
-
- getSurname() - Method in interface com.hfg.util.User
-
- getSurname() - Method in class com.hfg.util.UserImpl
-
- getSymbol() - Method in class com.hfg.bio.Strand
-
- getSymbol() - Method in class com.hfg.chem.Element
-
- getSymbol() - Method in class com.hfg.chem.Isotope
-
- getSymbol() - Method in class com.hfg.units.SI_ScalingFactor
-
- getSynonym() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
- getSynonyms() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getSystemId() - Method in class com.hfg.xml.Doctype
-
The system identifier of the external subset.
- getSystemLineSeparator() - Static method in class com.hfg.util.StringUtil
-
- getTable() - Method in class com.hfg.sql.table.DatabaseCol
-
- getTable(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
Returns a table by name.
- getTabLeader() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
- getTableCellMargins() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- getTableCellMargins() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- getTableCellProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyleProperties
-
- getTableProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyle
-
Returns the table properties tag if one exists or else instantiates a new one.
- getTableProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTable
-
Returns the table properties tag if one exists or else instantiates a new one.
- getTables() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
Returns all table definitions.
- getTabs() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Adds a tab stop definition.
- getTabStyle() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
- getTaggedCols(String) - Method in class com.hfg.sql.table.DatabaseTable
-
- getTagName() - Method in interface com.hfg.xml.XMLNode
-
- getTagName() - Method in class com.hfg.xml.XMLTag
-
- getTagReader() - Method in class com.hfg.html.HTMLDoc
-
- getTagReader() - Method in class com.hfg.xml.XMLBasedDoc
-
- getTailEnd() - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Returns the tailEnd tag if one exists or else instantiates a new one.
- getTarget() - Method in interface com.hfg.bio.seq.pattern.SeqPatternMatcher
-
- getTarget() - Method in class com.hfg.html.Form
-
- getTarget() - Method in class com.hfg.html.Link
-
- getTarget() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- getTargetMode() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- getTargetQuantity() - Method in class com.hfg.chem.solution.AqueousSolution
-
- getTaxon() - Method in class com.hfg.bio.seq.GenomicLocation
-
- getTaxonId() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getTaxonId() - Method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
Returns the taxon id.
- getTaxonomyRank() - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- getTerminalColumnCount() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getTerminiComposition() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getTerminiComposition() - Method in class com.hfg.bio.seq.Protein
-
- getTestOutputDir() - Static method in class com.hfg.util.TestUtil
-
Returns the directory that should be used for test output.
- getText() - Method in class com.hfg.html.Option
-
- getText() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getText() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- getTextAlign() - Method in class com.hfg.util.collection.DataColumn
-
- getTextBox() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShape
-
- getTextContent() - Method in class com.hfg.xml.XMLAttribute
-
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
Returns the run properties tag if one exists or else instantiates a new one.
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
Returns the text run properties tag if one exists or else instantiates a new one.
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyleProperties
-
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDocDefaults
-
Returns the text run properties tag if one exists or else instantiates a new one.
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- getTextRunProperties() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTagEndProperties
-
Returns the text run properties tag if one exists or else instantiates a new one.
- getTextVerticalAlignment() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getThemeElements() - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlTheme
-
Returns the theme elements tag.
- getThemeIndex() - Method in class com.hfg.xml.msofficexml.part.ThemePart
-
- getThread() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- getThreadGroup(String) - Static method in class com.hfg.util.ThreadUtil
-
- getThreadRoot() - Static method in class com.hfg.util.ThreadUtil
-
- getThreeLetterCode() - Method in class com.hfg.bio.AminoAcid
-
- getThresholds() - Method in class com.hfg.graphics.NonlinearColorScale
-
- getTime(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Time object in the Java programming language.
- getTime(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Time object in the Java programming language.
- getTime(int, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Time object
in the Java programming language.
- getTime(String, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Time object
in the Java programming language.
- getTimestamp(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Timestamp object in the Java programming language.
- getTimestamp(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as
a java.sql.Timestamp object in the Java programming language.
- getTimestamp(int, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Timestamp object
in the Java programming language.
- getTimestamp(String, Calendar) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.sql.Timestamp object
in the Java programming language.
- getTimestamp() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getTimestamp() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getTimestamp() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getTimestamp() - Method in interface com.hfg.util.io.RemoteFile
-
- getTimeZone() - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- getTimezoneOffset() - Method in interface com.hfg.util.User
-
- getTimezoneOffset() - Method in class com.hfg.util.UserImpl
-
- getTitle() - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- getTitle() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- getTitle() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getTitle() - Method in class com.hfg.citation.Citation
-
- getTitle() - Method in class com.hfg.citation.Journal
-
- getTitle() - Method in class com.hfg.citation.PatentData
-
- getTitle() - Method in class com.hfg.html.Div
-
- getTitle() - Method in class com.hfg.html.Head
-
Returns the page title.
- getTitle() - Method in class com.hfg.html.InputButton
-
- getTitle() - Method in class com.hfg.html.InputText
-
- getTitle() - Method in class com.hfg.html.Label
-
- getTitle() - Method in class com.hfg.html.Span
-
- getTitle() - Method in class com.hfg.html.Td
-
- getTitle() - Method in class com.hfg.html.Th
-
- getTitle() - Method in class com.hfg.util.collection.DataColumn
-
- getTitle() - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- getTitlePattern() - Method in class com.hfg.util.collection.DataColumn
-
- getTmpDirRoot() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getTo() - Method in class com.hfg.network.Edge
-
- getTooltip() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getTooltip() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getTooltipContent(Gene) - Method in class com.hfg.bio.seq.graphics.ContigPlot
-
- getTooltipContent() - Method in class com.hfg.graphics.Gene2D
-
- getTop() - Method in class com.hfg.graphics.PageMargins
-
- getTop() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
- getTop() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- getTopLeftVisibleCell() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Returns the top left visible cell.
- getTopLevelComments() - Method in class com.hfg.xml.parser.XMLTagReader
-
- getTopLevelComments() - Method in class com.hfg.xml.XMLBasedDoc
-
- getTotalGapLength() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getTotalNumDisulfideBonds() - Method in class com.hfg.bio.seq.Protein
-
Returns the total number of specified disulfide bonds or null if the number
of disulfides has not been set at any chain level.
- getTotalNumFreeCysteines() - Method in class com.hfg.bio.seq.Protein
-
Returns the total number of free cysteines (or the total number of cysteines if the number
of disulfides has not been set at any chain level.
- getTotalTagCount() - Method in interface com.hfg.xml.XMLContainer
-
Returns a count of the total number of tags, including this root tag, its
subtags, the subtags' subtags, etc.
- getTotalTagCount() - Method in class com.hfg.xml.XMLContainerImpl
-
- getTraceValues(Nucleotide) - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getTrailingResidue() - Method in class com.hfg.bio.DigestFragment
-
- getTransactionIsolation() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getTransform() - Method in class com.hfg.graphics.Graphics2DState
-
- getTransform() - Method in class com.hfg.graphics.SvgGraphics2D
-
- getTransform() - Method in class com.hfg.svg.AbstractSvgNode
-
- getTransform() - Method in interface com.hfg.svg.SvgNode
-
- getTransform() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShapeProperties
-
Returns the transform tag if one exists or else instantiates a new one.
- getTreeWidth() - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- getType() - Method in class com.hfg.bio.proteinproperty.ChemicalFormula
-
- getType() - Method in class com.hfg.bio.proteinproperty.ExtinctionCoeff
-
- getType() - Method in class com.hfg.bio.proteinproperty.Hydrophobicity
-
- getType() - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- getType() - Method in class com.hfg.bio.proteinproperty.Mass
-
- getType() - Method in class com.hfg.bio.proteinproperty.PctExtinctionCoeff
-
- getType() - Method in class com.hfg.bio.proteinproperty.SeqLength
-
- getType() - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- getType() - Method in interface com.hfg.bio.seq.BioSequence
-
- getType() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getType() - Method in class com.hfg.bio.seq.NucleicAcid
-
- getType() - Method in class com.hfg.bio.seq.Protein
-
- getType() - Method in class com.hfg.bio.seq.ProteinXLink
-
- getType() - Method in class com.hfg.cert.SAN
-
- getType() - Method in class com.hfg.citation.Citation
-
- getType() - Method in class com.hfg.javascript.ext.ExtModelField
-
- getType() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the type of this ResultSet object.
- getType() - Method in class com.hfg.sql.SQLClause
-
- getType() - Method in class com.hfg.sql.table.DatabaseCol
-
- getType() - Method in class com.hfg.sql.WhereClauseGroup
-
- getType() - Method in class com.hfg.util.mime.MimeContentDisposition
-
- getType() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- getType() - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- getType() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- getType() - Method in class com.hfg.xml.xsd.XsdElement
-
- getTypeMap() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getTypeName() - Method in class com.hfg.xml.xsd.XsdElement
-
- getTypeString() - Method in class com.hfg.xml.msofficexml.OfficeOpenXMLContentType
-
- getUID() - Method in interface com.hfg.util.User
-
- getUID() - Method in class com.hfg.util.UserImpl
-
- getUnderline() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- getUnescapedContent() - Method in interface com.hfg.xml.XMLContainer
-
Expands character entities before retuning the content of this XMLTag.
- getUnescapedContent() - Method in class com.hfg.xml.XMLContainerImpl
-
- getUnfilteredRemoteFileList() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getUnfilteredRemoteFileList() - Method in interface com.hfg.util.io.RemoteFileLister
-
- getUnfilteredRemoteFileListImpl() - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- getUnfilteredRemoteFileListImpl() - Method in class com.hfg.util.io.FileSystemRemoteFileLister
-
- getUnfilteredRemoteFileListImpl() - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- getUnfilteredRemoteFileListImpl() - Method in class com.hfg.util.io.HTTPRemoteFileLister
-
- getUnicodeChar(String) - Method in class com.hfg.xml.parser.AbstractEntities
-
- getUnicodeStream(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
- getUnicodeStream(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
- getUniqueIdentifier() - Method in class com.hfg.citation.ncbi.MeshHeading
-
- getUniqueIdentifier() - Method in class com.hfg.citation.ncbi.MeshQualifier
-
- getUnit() - Method in class com.hfg.units.length.Length
-
- getUnit() - Method in class com.hfg.units.Quantity
-
- getUnit() - Method in class com.hfg.units.SubUnit
-
- getUnit() - Method in class com.hfg.units.TimeSpan
-
- getUnits() - Method in interface com.hfg.graphics.units.GfxSize
-
- getUnits() - Method in class com.hfg.graphics.units.GfxSizeImpl
-
- getUnits() - Method in class com.hfg.math.units.AngleImpl
-
- getUnscapedValue() - Method in class com.hfg.xml.XMLAttribute
-
- getURI() - Method in class com.hfg.citation.Citation
-
- getURI() - Method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlExtension.URI_Type
-
- getURI() - Method in class com.hfg.xml.XMLNamespace
-
- getURL() - Method in class com.hfg.bio.taxonomy.ncbi.NCBIRemoteTaxonomyDataSource
-
- getURL() - Method in class com.hfg.citation.Citation
-
- getURL() - Method in class com.hfg.html.Link
-
- getURL(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.net.URL
object in the Java programming language.
- getURL(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the value of the designated column in the current row
of this ResultSet object as a java.net.URL
object in the Java programming language.
- getURL() - Method in class com.hfg.svg.SvgUse
-
- getURL() - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- getURL() - Method in class com.hfg.util.io.FTPRemoteFile
-
- getURL() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- getURL() - Method in interface com.hfg.util.io.RemoteFile
-
- getURLs() - Method in class com.hfg.bio.seq.Gene
-
- getURLs() - Method in class com.hfg.graphics.Gene2D
-
- getUser() - Method in class com.hfg.security.LoginCredentials
-
- getUser(HttpServletRequest) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getUser(HttpSession) - Static method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getUserContext() - Method in class com.hfg.ldap.LDAP_Config
-
- getUserData(String) - Method in class com.hfg.xml.XMLAttribute
-
- getUserFactory() - Method in class com.hfg.ldap.LDAPClient
-
- getUserObjectSetter() - Method in class com.hfg.ldap.LDAP_UserField
-
- getUserPeakLocations() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getUserPrincipal() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- getUserQualityScores() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getUserSeq() - Method in class com.hfg.bio.seq.format.abi.ABIF
-
- getUsersForGroup(String) - Method in class com.hfg.ldap.LDAPClient
-
- getUseSessionCookie() - Method in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- getValences(Element, int) - Method in class com.hfg.chem.ValenceModel
-
Returns the values for the number of valence electrons for the element with
the specified charge.
- getValue() - Method in interface com.hfg.bio.seq.format.feature.FeatureQualifier
-
- getValue() - Method in class com.hfg.bio.seq.format.feature.FeatureQualifierImpl
-
- getValue() - Method in class com.hfg.cert.SAN
-
- getValue() - Method in class com.hfg.citation.ncbi.MeshHeading
-
- getValue() - Method in class com.hfg.citation.ncbi.MeshQualifier
-
- getValue() - Method in class com.hfg.css.CSSDeclaration
-
- getValue() - Method in class com.hfg.html.InputButton
-
- getValue() - Method in class com.hfg.html.InputCheckbox
-
- getValue() - Method in class com.hfg.html.InputFile
-
- getValue() - Method in class com.hfg.html.InputHidden
-
- getValue() - Method in class com.hfg.html.InputPassword
-
- getValue() - Method in class com.hfg.html.InputRadio
-
- getValue() - Method in class com.hfg.html.InputSubmit
-
- getValue() - Method in class com.hfg.html.InputText
-
- getValue() - Method in class com.hfg.html.Option
-
- getValue() - Method in enum com.hfg.ldap.LDAPClient.ReferralHandling
-
- getValue() - Method in class com.hfg.math.Percent
-
- getValue() - Method in class com.hfg.setting.BooleanMapSetting
-
- getValue() - Method in class com.hfg.setting.BooleanSetting
-
- getValue() - Method in class com.hfg.setting.ComplexSetting
-
- getValue() - Method in class com.hfg.setting.FloatMapSetting
-
- getValue() - Method in class com.hfg.setting.FloatSetting
-
- getValue() - Method in class com.hfg.setting.IntListSetting
-
- getValue() - Method in class com.hfg.setting.IntSetting
-
- getValue() - Method in class com.hfg.setting.LongListSetting
-
- getValue() - Method in class com.hfg.setting.LongSetting
-
- getValue() - Method in interface com.hfg.setting.Setting
-
- getValue() - Method in class com.hfg.setting.ShortSetting
-
- getValue() - Method in class com.hfg.setting.StringListSetting
-
- getValue() - Method in class com.hfg.setting.StringMapSetting
-
- getValue() - Method in class com.hfg.setting.StringSetting
-
- getValue() - Method in class com.hfg.sql.table.field.DatabaseField
-
- getValue() - Method in class com.hfg.util.collection.MatrixCell
-
- getValue() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- getValue() - Method in class com.hfg.xml.XMLAttribute
-
- getValue1() - Method in class com.hfg.util.TwoSpot
-
- getValue2() - Method in class com.hfg.util.TwoSpot
-
- getValueThresholdForProbability(float) - Method in class com.hfg.math.StandardNormalDistribution
-
Given a probability P, it returns an approximation to the X satisfying P = Pr{Z <= X} where Z is a
random variable from the standard normal distribution.
- getVanderWaalsRadius() - Method in class com.hfg.chem.Element
-
Returns the Van der Waals radius.
- getVariableRowHeight() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getVBA_DataPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getVBA_ProjectStream() - Static method in class com.hfg.xml.msofficexml.docx.part.WmlVbaPart
-
- getVBA_RelationshipPart() - Method in class com.hfg.xml.msofficexml.docx.Docx
-
- getVericalLineEndIndex() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getVericalLineStartIndex() - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- getVersion() - Method in class com.hfg.citation.Citation
-
- getVersionNum() - Method in class com.hfg.css.CSSLevel
-
- getVersionString() - Method in enum com.hfg.xml.XMLSpec
-
- getViewBox() - Method in class com.hfg.svg.SVG
-
- getViewBox() - Method in class com.hfg.svg.SvgMarker
-
- getVolume() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getVolume() - Method in class com.hfg.citation.Citation
-
- getWarnings() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- getWarnings() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Retrieves the first warning reported by calls on this
ResultSet object.
- getWebCertificates(String) - Static method in class com.hfg.cert.CertificateUtil
-
- getWebsiteTitle() - Method in class com.hfg.citation.Citation
-
- getWGSAccession() - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- getWhenCreated() - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- getWidth() - Method in class com.hfg.graphics.units.GfxSize2D
-
- getWidth() - Method in class com.hfg.html.Applet
-
- getWidth() - Method in class com.hfg.html.IFrame
-
- getWidth() - Method in class com.hfg.html.Img
-
- getWidth() - Method in class com.hfg.html.ObjectTag
-
- getWidth() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getWidth() - Method in class com.hfg.svg.SVG
-
- getWidth() - Method in class com.hfg.svg.SvgForeignObject
-
- getWidth() - Method in class com.hfg.svg.SvgGenerationSettings
-
- getWidth() - Method in class com.hfg.svg.SvgRect
-
- getWidth() - Method in class com.hfg.svg.SvgText
-
- getWidth() - Method in class com.hfg.util.collection.DataColumn
-
- getWidth() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- GetWild - Class in com.hfg.anttask
-
Ant task for retrieving a particular file from a wildcarded URL source.
- GetWild() - Constructor for class com.hfg.anttask.GetWild
-
- getWordSize() - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- getWorkbook() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getWorkbookPart() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getWorkbookRelationshipPart() - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- getWorkingDir() - Method in class com.hfg.util.Executor
-
Returns the working directory for command execution.
- getWorksheet(String) - Method in class com.hfg.xml.msofficexml.xlsx.Workbook
-
Returns a worksheet by name.
- getWorksheetRelationshipPart() - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetPart
-
- getWorksheets() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorkbook
-
- getWorksheets() - Method in class com.hfg.xml.msofficexml.xlsx.Workbook
-
Returns all worksheets.
- getWrap() - Method in class com.hfg.html.Textarea
-
- getX() - Method in class com.hfg.graphics.units.GfxPoint
-
- getX() - Method in class com.hfg.svg.SvgForeignObject
-
- getX() - Method in class com.hfg.svg.SvgRect
-
- getX() - Method in class com.hfg.svg.SvgText
-
- getX() - Method in class com.hfg.svg.SvgTSpan
-
- getX1() - Method in class com.hfg.svg.SvgLine
-
- getX2() - Method in class com.hfg.svg.SvgLine
-
- getXAxisAsSVG() - Method in class com.hfg.graphics.Track2D
-
- getXAxisBufferedImage() - Method in class com.hfg.graphics.Track
-
- getXAxisBufferedImage() - Method in class com.hfg.graphics.Track2D
-
- getXCoordinate() - Method in class com.hfg.chem.Atom
-
- getXLinkComposition() - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- getXLinkComposition() - Method in class com.hfg.bio.seq.Protein
-
- getXLinks() - Method in class com.hfg.bio.seq.Protein
-
- getXLinks(Set<ProteinXLink>) - Method in class com.hfg.bio.seq.Protein
-
- getXMLName() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorderPosition
-
- getXMLName() - Method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderType
-
- getXMLNodeSubtags() - Method in interface com.hfg.xml.XMLContainer
-
Returns a List of all subtags on this object that implement XMLNode.
- getXMLNodeSubtags() - Method in class com.hfg.xml.XMLContainerImpl
-
- getXMLReader() - Method in class com.hfg.xml.parser.SaxyParser
-
- getXSplit() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Returns the horizontal split position - the right-most col index of the left pane.
- getXType() - Method in class com.hfg.javascript.ext.ExtGridCol
-
- getY() - Method in class com.hfg.graphics.units.GfxPoint
-
- getY() - Method in class com.hfg.svg.SvgForeignObject
-
- getY() - Method in class com.hfg.svg.SvgRect
-
- getY() - Method in class com.hfg.svg.SvgText
-
- getY() - Method in class com.hfg.svg.SvgTSpan
-
- getY1() - Method in class com.hfg.svg.SvgLine
-
- getY2() - Method in class com.hfg.svg.SvgLine
-
- getYCoordinate() - Method in class com.hfg.chem.Atom
-
- getYear() - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- getYear() - Method in class com.hfg.citation.Citation
-
- getYear(Date) - Static method in class com.hfg.datetime.DateUtil
-
- getYSplit() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Returns the vertical split position - the bottom-most row index of the top pane.
- getYYYY_MM(Date, char) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM(LocalDateTime, char) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD() - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_aa() - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_aa(Date) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_aa(LocalDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_ss() - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_ss(Date) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYY_MM_DD_HH_mm_ss(LocalDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYYMMDD() - Static method in class com.hfg.datetime.DateUtil
-
- getYYYYMMDD(Date) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYYMMDD(LocalDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getYYYYMMDD(ZonedDateTime) - Static method in class com.hfg.datetime.DateUtil
-
- getZCoordinate() - Method in class com.hfg.chem.Atom
-
- getZScore() - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- getZScore() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- getZScore(double) - Method in class com.hfg.math.StandardNormalDistribution
-
- geUserAgentString() - Method in class com.hfg.util.io.HTTPRemoteFile
-
- GfxPoint - Class in com.hfg.graphics.units
-
Container for unit-independent point.
- GfxPoint() - Constructor for class com.hfg.graphics.units.GfxPoint
-
- GfxPoint(GfxSize, GfxSize) - Constructor for class com.hfg.graphics.units.GfxPoint
-
- GfxPoint(int, int, GfxUnits) - Constructor for class com.hfg.graphics.units.GfxPoint
-
- GfxPoint(float, float, GfxUnits) - Constructor for class com.hfg.graphics.units.GfxPoint
-
- GfxSize - Interface in com.hfg.graphics.units
-
Interface for a unit-independent graphic length measurement.
- GfxSize2D - Class in com.hfg.graphics.units
-
Container for unit-independent 2D width and height.
- GfxSize2D() - Constructor for class com.hfg.graphics.units.GfxSize2D
-
- GfxSizeImpl - Class in com.hfg.graphics.units
-
Base class for unit-independent graphic length measurement.
- GfxSizeImpl(int, GfxUnits) - Constructor for class com.hfg.graphics.units.GfxSizeImpl
-
- GfxSizeImpl(float, GfxUnits) - Constructor for class com.hfg.graphics.units.GfxSizeImpl
-
- GfxUnits - Class in com.hfg.graphics.units
-
Enumeration of absolute graphic length measurement units.
- GHOST_WHITE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(248, 248, 255)
- giga - Static variable in class com.hfg.units.SI_ScalingFactor
-
- gingerbreadMan - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- GIVEN_NAME - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- GIVEN_NAME - Static variable in class com.hfg.ldap.LDAP_Field
-
- GlcA - Static variable in class com.hfg.bio.glyco.Monosaccharide
-
- GlcNAc - Static variable in class com.hfg.bio.glyco.Monosaccharide
-
- GLOSSARY_DOC - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- GLU_C - Static variable in class com.hfg.bio.Protease
-
- GLU_GLN_AVG - Static variable in class com.hfg.bio.AminoAcid
-
- Glucose - Static variable in class com.hfg.bio.glyco.Monosaccharide
-
- GLUCOSEPANE - Static variable in class com.hfg.bio.seq.ProteinXLinkType
-
Lysine-arginine protein cross-linking product common with aging of collagen and crystallin.
- GLUTAMIC_ACID - Static variable in class com.hfg.bio.AminoAcid
-
- GLUTAMINE - Static variable in class com.hfg.bio.AminoAcid
-
- Glycan - Class in com.hfg.bio.glyco
-
Common mammalian polysaccharide structures.
- GLYCINE - Static variable in class com.hfg.bio.AminoAcid
-
- GN_LINE_CODE - Static variable in class com.hfg.bio.seq.format.EMBL
-
- GOLD - Static variable in class com.hfg.chem.Element
-
- GOLD - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- GOLD - Static variable in class com.hfg.html.attribute.HTMLColor
-
(255, 215, 0)
- GOLDENROD - Static variable in class com.hfg.html.attribute.HTMLColor
-
(218, 165, 32)
- GOOGLE_CHOME_FRAME - Static variable in class com.hfg.html.Meta
-
- gradient - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- GRADIENT_FILL - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- GRADIENT_FILL - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- GRADIENT_STOP - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- GRADIENT_STOP_LIST - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- gram - Static variable in class com.hfg.units.MassUnit
-
- GRAMMAR_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- GRANT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- GRANT_ID - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- GRANT_LIST - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- GRAPHIC - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- GRAPHIC_DATA - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- GRAPHIC_FRAME_LOCKS - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- Graphics2DState - Class in com.hfg.graphics
-
A convenience container for tracking Graphics2D states.
- Graphics2DState(Graphics2D) - Constructor for class com.hfg.graphics.Graphics2DState
-
- GraphicsUtil - Class in com.hfg.graphics
-
Utility methods for use with Graphics2D.
- GraphicsUtil() - Constructor for class com.hfg.graphics.GraphicsUtil
-
- GREATER_THAN - Static variable in class com.hfg.math.RelationalOperator
-
- GREATER_THAN_OR_EQUAL_TO - Static variable in class com.hfg.math.RelationalOperator
-
- greaterThan(GfxSize) - Method in interface com.hfg.graphics.units.GfxSize
-
- greaterThan(Quantity) - Method in class com.hfg.units.Quantity
-
- greaterThanOrEqualTo(Quantity) - Method in class com.hfg.units.Quantity
-
- GREEN - Static variable in class com.hfg.graphics.ContrastingColorPalette
-
( 43, 206, 72)
- GREEN - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 0, 255, 0)
- GREEN_YELLOW - Static variable in class com.hfg.html.attribute.HTMLColor
-
(173, 255, 47)
- GREY - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- GREY - Static variable in class com.hfg.html.attribute.HTMLColor
-
(190, 190, 190)
- grid_cell - Static variable in class com.hfg.css.CSSProperty
-
- GRID_COL - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- grid_column - Static variable in class com.hfg.css.CSSProperty
-
- grid_column_align - Static variable in class com.hfg.css.CSSProperty
-
- grid_column_sizing - Static variable in class com.hfg.css.CSSProperty
-
- grid_column_span - Static variable in class com.hfg.css.CSSProperty
-
- grid_columns - Static variable in class com.hfg.css.CSSProperty
-
- grid_flow - Static variable in class com.hfg.css.CSSProperty
-
- grid_row - Static variable in class com.hfg.css.CSSProperty
-
- grid_row_align - Static variable in class com.hfg.css.CSSProperty
-
- grid_row_sizing - Static variable in class com.hfg.css.CSSProperty
-
- grid_row_span - Static variable in class com.hfg.css.CSSProperty
-
- grid_rows - Static variable in class com.hfg.css.CSSProperty
-
- GRID_SPAN - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- grid_template - Static variable in class com.hfg.css.CSSProperty
-
- GRIMSLEY - Static variable in class com.hfg.bio.KaSet
-
Grimsley GR, Scholtz JM, Pace CN (2009).
- GRIMSLEY - Static variable in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- GROOVE - Static variable in class com.hfg.css.CSSBorderStyle
-
- group - Static variable in class com.hfg.svg.SVG
-
- group() - Method in class com.hfg.util.BYPStringMatcher
-
- GROUP - Static variable in class com.hfg.xml.xsd.XsdXML
-
- groupNodes(float, PhylogeneticTree.Flag...) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- GSS - Static variable in class com.hfg.bio.seq.format.EMBL_DataClass
-
Genome Survey Sequence GSS
- GSS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
GSS sequences (Genome Survey Sequences)
- GUANINE - Static variable in class com.hfg.bio.Nucleotide
-
- guessBioSequenceType(String) - Static method in class com.hfg.bio.seq.SeqUtil
-
Guesses the BioSequenceType for the specified sequence.
- guessDataTypeFromValues(Collection<? extends Object>) - Static method in enum com.hfg.util.DataType
-
- guessFormatFromName(String) - Static method in enum com.hfg.image.ImageFormat
-
Tries to guess the image format from the filename extension in a case-insensitive way.
- GUTTER_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- GZIP - Class in com.hfg.util.io
-
Static methods to simplify GZIP compression/uncompression
- GZIP() - Constructor for class com.hfg.util.io.GZIP
-
- GZIP - Static variable in class com.hfg.xml.XMLUtil
-
- GZIPCompressInputStream - Class in com.hfg.util.io
-
Provides an InputStream that applies GZIP compression.
- GZIPCompressInputStream(InputStream) - Constructor for class com.hfg.util.io.GZIPCompressInputStream
-
- S - Static variable in class com.hfg.bio.Nucleotide
-
- S - Static variable in class com.hfg.html.HTML
-
- S_region - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- SACCHAROMYCES_CEREVISIAE - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Yeast
- SacI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SacII - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SADDLE_BROWN - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- SADDLE_BROWN - Static variable in class com.hfg.html.attribute.HTMLColor
-
(139, 69, 19)
- safari - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SalI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SALMON - Static variable in class com.hfg.html.attribute.HTMLColor
-
(250, 128, 114)
- SAM_ACCOUNT_NAME - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- SAM_ACCOUNT_TYPE - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- SAMARIUM - Static variable in class com.hfg.chem.Element
-
- SAN - Class in com.hfg.cert
-
Container for a certificate Subject Alternative Name (SAN) entry.
- SAN(SAN_Type, String) - Constructor for class com.hfg.cert.SAN
-
- SAN_Type - Class in com.hfg.cert
-
Types for a certificate Subject Alternative Name (SAN) entry.
- SANDY_BROWN - Static variable in class com.hfg.html.attribute.HTMLColor
-
(244, 164, 96)
- sanitizeFilename(String) - Static method in class com.hfg.util.FileUtil
-
- SapI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SARCOSINE - Static variable in class com.hfg.bio.AminoAcid
-
- satellite - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- Sau96I - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- save(Connection) - Method in class com.hfg.sql.table.DatabaseRow
-
Invokes insert() or update() depending on whether there is an id column and
if it already has a value.
- SAVE_PREVIEW_PICT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- sawtooth - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- sawtoothGray - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SaxyParser - Class in com.hfg.xml.parser
-
SaxyParser is a lightweight SAX parser.
- SaxyParser() - Constructor for class com.hfg.xml.parser.SaxyParser
-
- SbfI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SCAFFOLD - Static variable in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- ScaI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- scale(double, double) - Method in class com.hfg.graphics.SvgGraphics2D
-
- scale(float) - Method in interface com.hfg.graphics.units.GfxSize
-
- scale(float) - Method in class com.hfg.graphics.units.GfxSize2D
-
- scale(float) - Method in class com.hfg.graphics.units.GfxSizeImpl
-
- scale(float) - Method in interface com.hfg.math.units.Angle
-
- scale(float) - Method in class com.hfg.math.units.AngleImpl
-
- scale(float) - Method in class com.hfg.svg.SVG
-
- scale - Static variable in class com.hfg.svg.SvgAttr
-
- scale(QuantityType, SI_ScalingFactor) - Method in class com.hfg.units.Quantity
-
- SCALE_WITH_DOC_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- ScaleColorist<T extends Number> - Class in com.hfg.graphics
-
Colorist implementation that uses ranges.
- ScaleColorist(ColorScale, Range<T>) - Constructor for class com.hfg.graphics.ScaleColorist
-
- ScaleColorist(XMLTag) - Constructor for class com.hfg.graphics.ScaleColorist
-
- SCALED_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- scaleDownImage(File, int, File) - Static method in class com.hfg.image.ImageIO_Util
-
If the destination format is JPG, a default compression quality of 0.7 is used.
- scaleDownImage(File, int, File, float) - Static method in class com.hfg.image.ImageIO_Util
-
- scaleImage(File, int, File) - Method in class com.hfg.image.ImageMagick
-
- SCANDIUM - Static variable in class com.hfg.chem.Element
-
- scaredCat - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SCENEDESMUS_MITO - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- Schedule - Interface in com.hfg.util.scheduler
-
Interface for specify a job execution schedule.
- ScheduledJob - Class in com.hfg.util.scheduler
-
Runs specified job on a specified schedule.
- ScheduledJob(Runnable, Schedule) - Constructor for class com.hfg.util.scheduler.ScheduledJob
-
- Scheduler - Class in com.hfg.util.scheduler
-
Runs specified jobs on individualized schedules.
- Scheduler() - Constructor for class com.hfg.util.scheduler.Scheduler
-
- Schema - Class in com.hfg.sql.jdbc
-
Simple database schema container.
- Schema(String) - Constructor for class com.hfg.sql.jdbc.Schema
-
- SCHEMA - Static variable in class com.hfg.xml.xsd.XsdXML
-
- SCHEMA_LOCATION_ATT - Static variable in class com.hfg.xml.XMLSchema
-
Associates a schema document that has a target namespace with an instance document.
- SCHEME_COLOR - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- Scientific - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- SCIENTIFIC - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- SCIENTIFIC_NAME - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- SCIENTIFIC_NOTATION_WITH_UNITS_PATTERN - Static variable in interface com.hfg.graphics.units.GfxSize
-
- SCOPED - Static variable in class com.hfg.html.HTML
-
- score(int, char) - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- score(char, char) - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- SCORE_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- scoreCaseInsensitive(char, char) - Method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- scramble(CharSequence) - Static method in class com.hfg.util.StringUtil
-
- ScrFI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SCRGB_COLOR - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SCRIPT - Static variable in class com.hfg.html.HTML
-
- Script - Class in com.hfg.html
-
Represents a script (<script>) tag.
- Script() - Constructor for class com.hfg.html.Script
-
- Script(MimeType) - Constructor for class com.hfg.html.Script
-
- Script(String) - Constructor for class com.hfg.html.Script
-
- Script(CharSequence) - Constructor for class com.hfg.html.Script
-
- Script(XMLNode) - Constructor for class com.hfg.html.Script
-
- script - Static variable in class com.hfg.svg.SVG
-
- SCRIPT_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SCROLLING - Static variable in class com.hfg.html.HTML
-
- SEA_GREEN - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 46, 139, 87)
- SEABORGIUM - Static variable in class com.hfg.chem.Element
-
- SEASHELL - Static variable in class com.hfg.html.attribute.HTMLColor
-
(255, 245, 238)
- seattle - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- second - Static variable in class com.hfg.units.TimeUnit
-
- SECT_PROPS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SECT_PROPS_CHANGES - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SECTION - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- seed - Static variable in class com.hfg.svg.SvgAttr
-
- seek(long) - Method in class com.hfg.util.io.ByteSource
-
- segment - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- SEGMENT - Static variable in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- SegmentReader - Class in com.hfg.util.io
-
FilterReader that provides the specified segment of the stream.
- SegmentReader(Reader, Range<Integer>) - Constructor for class com.hfg.util.io.SegmentReader
-
- SELECT - Static variable in class com.hfg.html.HTML
-
- Select - Class in com.hfg.html
-
Represents an html select (<select>) tag.
- Select() - Constructor for class com.hfg.html.Select
-
- Select(String) - Constructor for class com.hfg.html.Select
-
- Select(XMLNode) - Constructor for class com.hfg.html.Select
-
- SELECTED - Static variable in class com.hfg.html.HTML
-
- SELECTED - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SELECTION - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SELENIUM - Static variable in class com.hfg.chem.Element
-
- SELENOCYSTEINE - Static variable in class com.hfg.bio.AminoAcid
-
http://www.albany.edu/faculty/cs812/bio366/selenocysteine_ppt.pdf
- SELENOMETHIONINE - Static variable in class com.hfg.bio.AminoAcid
-
- SEMI_HIDDEN - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SENSE - Static variable in class com.hfg.bio.Strand
-
- sEntityPattern2 - Static variable in class com.hfg.xml.XMLUtil
-
- SEQ_LENGTH_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- SEQ_OF_REFS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SeqCitation - Class in com.hfg.bio.seq.format
-
A citation with sequence location information.
- SeqCitation() - Constructor for class com.hfg.bio.seq.format.SeqCitation
-
- SeqFeature - Interface in com.hfg.bio.seq.format.feature
-
- SeqFeatureImpl - Class in com.hfg.bio.seq.format.feature
-
Basic implementation of SeqFeature interface.
- SeqFeatureImpl(FeatureKey, SeqFeatureLocation) - Constructor for class com.hfg.bio.seq.format.feature.SeqFeatureImpl
-
- SeqFeatureLocation - Interface in com.hfg.bio.seq.format.feature
-
Interface for the location of a sequence feature.
- SeqFilterReader(Reader) - Constructor for class com.hfg.bio.seq.BioSequenceImpl.SeqFilterReader
-
- SeqFormat - Interface in com.hfg.bio.seq.format
-
Created by taylora on 9/24/14.
- SeqFormatException - Exception in com.hfg.bio.seq.format
-
Indicates an exception with the format of the sequence record being read.
- SeqFormatException(String) - Constructor for exception com.hfg.bio.seq.format.SeqFormatException
-
- SeqFormatException(String, Throwable) - Constructor for exception com.hfg.bio.seq.format.SeqFormatException
-
- SeqFormatException(Throwable) - Constructor for exception com.hfg.bio.seq.format.SeqFormatException
-
- SeqIOException - Exception in com.hfg.bio.seq.format
-
Indicates an exception during sequence I/O manipulation.
- SeqIOException(String) - Constructor for exception com.hfg.bio.seq.format.SeqIOException
-
- SeqIOException(String, Throwable) - Constructor for exception com.hfg.bio.seq.format.SeqIOException
-
- SeqIOException(Throwable) - Constructor for exception com.hfg.bio.seq.format.SeqIOException
-
- SeqLength - Class in com.hfg.bio.proteinproperty
-
Sequence length packaged as a protein property for ease of integration with
other protein properties.
- SeqLocation - Class in com.hfg.bio.seq
-
1-based biological sequence location object.
- SeqLocation() - Constructor for class com.hfg.bio.seq.SeqLocation
-
- SeqLocation(Integer, Integer) - Constructor for class com.hfg.bio.seq.SeqLocation
-
- SeqLocation(Range<Integer>) - Constructor for class com.hfg.bio.seq.SeqLocation
-
- SeqLocation(String, Integer, Integer) - Constructor for class com.hfg.bio.seq.SeqLocation
-
- SeqMappingCoverage - Class in com.hfg.bio.seq
-
Simple container for sequence mapping stats.
- SeqMappingCoverage() - Constructor for class com.hfg.bio.seq.SeqMappingCoverage
-
- SeqPattern<S extends BioSequence,T extends SeqPatternMatch> - Class in com.hfg.bio.seq.pattern
-
Abstract container for a sequence pattern (motif).
- SeqPattern() - Constructor for class com.hfg.bio.seq.pattern.SeqPattern
-
- SeqPattern(String) - Constructor for class com.hfg.bio.seq.pattern.SeqPattern
-
- SeqPatternConfigurationException - Exception in com.hfg.bio.seq.pattern
-
Indicates a problem during the configuration of a sequence pattern.
- SeqPatternConfigurationException(String) - Constructor for exception com.hfg.bio.seq.pattern.SeqPatternConfigurationException
-
- SeqPatternConfigurationException(String, Throwable) - Constructor for exception com.hfg.bio.seq.pattern.SeqPatternConfigurationException
-
- SeqPatternConfigurationException(Throwable) - Constructor for exception com.hfg.bio.seq.pattern.SeqPatternConfigurationException
-
- SeqPatternMatch - Class in com.hfg.bio.seq.pattern
-
Container for a sequence pattern match.
- SeqPatternMatch() - Constructor for class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- SeqPatternMatch(SeqPattern, String, SeqLocation) - Constructor for class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- SeqPatternMatcher<S extends BioSequence,T extends SeqPatternMatch> - Interface in com.hfg.bio.seq.pattern
-
- SeqQualityScores - Class in com.hfg.bio.seq
-
Container for sequence quality scores.
- SeqQualityScores(String) - Constructor for class com.hfg.bio.seq.SeqQualityScores
-
- SeqQualityScores(String, SeqQualityScoreScheme) - Constructor for class com.hfg.bio.seq.SeqQualityScores
-
- SeqQualityScores(short[]) - Constructor for class com.hfg.bio.seq.SeqQualityScores
-
- SeqQualityScores(short[], SeqQualityScoreScheme) - Constructor for class com.hfg.bio.seq.SeqQualityScores
-
- SeqQualityScoreScheme - Enum in com.hfg.bio.seq
-
- SeqRepositoryDivision - Interface in com.hfg.bio.taxonomy
-
Sequence repository division (section).
- SeqTopology - Class in com.hfg.bio.seq
-
Enumeration of sequence topology types
- SEQUENCE - Static variable in class com.hfg.xml.xsd.XsdXML
-
- SeqUtil - Class in com.hfg.bio.seq
-
Utility class of generic sequence functions.
- SeqUtil() - Constructor for class com.hfg.bio.seq.SeqUtil
-
- SER_PHOSPHO - Static variable in class com.hfg.bio.AminoAcid
-
- SERIES - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SERINE - Static variable in class com.hfg.bio.AminoAcid
-
- SEROGROUP - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- serotype - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- SEROTYPE - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- serovar - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- ServletRequestDispatcher - Class in com.hfg.webapp
-
Dispatcher for dealing with servlet requests.
- ServletRequestDispatcher() - Constructor for class com.hfg.webapp.ServletRequestDispatcher
-
- ServletRequestHandler - Interface in com.hfg.webapp
-
Interface for servlet content generation endpoints such as pages.
- SESSION_USER - Static variable in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- set(int, E) - Method in class com.hfg.util.collection.OrderedSet
-
- set(SsmlBorderStyle) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- set(SsmlBorderType, SsmlBorderStyle) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- set(SsmlBorderType, SsmlBorderStyle, Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- set1904BasedDates(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
Indicate that our dates are based on 01 Jan 1904 and not 01 Jan 1900.
- set2DigitYearStart(Date) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- set3Prime(int) - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
Sets the 3' position of the location.
- set5Prime(int) - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
Sets the 5' position of the location.
- setAA(Character) - Method in class com.hfg.bio.seq.translation.Codon
-
- setAbbrev(String) - Method in class com.hfg.citation.Journal
-
- setAboveAverage(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setAbstract(String) - Method in class com.hfg.citation.Citation
-
- setAccent1(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAccent2(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAccent3(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAccent4(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAccent5(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAccent6(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setAcceptorChainId(String) - Method in class com.hfg.bio.seq.ProteinXLink
-
- setAcceptorSpliceSite(CharSequence) - Method in class com.hfg.bio.seq.genomic.Intron
-
- setAccessDate(Date) - Method in class com.hfg.citation.Citation
-
- setAction(String) - Method in class com.hfg.html.Form
-
- setActivePane(SsmlActivePane) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Specifies the active portion of the pane.
- setActualQuantity(Quantity) - Method in class com.hfg.chem.solution.AqueousSolution
-
The actual quantity should be specified either in terms of volume or in terms of mass.
- setAdjustedPctIdentity(Float) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
Sets the percent identity that doesn't penalize sequence's terminal gaps.
- setAfter(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlSpacing
-
Specifies the spacing that should be added after the last line in this paragraph
in the document in absolute units.
- setAlias(String) - Method in class com.hfg.sql.table.DatabaseCol
-
- setAlias(String) - Method in class com.hfg.sql.table.DatabaseTable
-
- setAlign(Align) - Method in class com.hfg.html.Applet
-
- setAlign(Align) - Method in class com.hfg.html.Col
-
- setAlign(Align) - Method in class com.hfg.html.Colgroup
-
- setAlign(Align) - Method in class com.hfg.html.Div
-
- setAlign(Align) - Method in class com.hfg.html.H1
-
- setAlign(Align) - Method in class com.hfg.html.H2
-
- setAlign(Align) - Method in class com.hfg.html.H3
-
- setAlign(Align) - Method in class com.hfg.html.IFrame
-
- setAlign(VAlign) - Method in class com.hfg.html.IFrame
-
Since an img align attribute allows the normally valign values of 'top'
and 'bottom', this alternate setAlign method takes a VAlign object.
- setAlign(Align) - Method in class com.hfg.html.Img
-
- setAlign(VAlign) - Method in class com.hfg.html.Img
-
Since an img align attribute allows the normally valign values of 'top'
and 'bottom', this alternate setAlign method takes a VAlign object.
- setAlign(Align) - Method in class com.hfg.html.P
-
- setAlign(Align) - Method in class com.hfg.html.TBody
-
- setAlign(Align) - Method in class com.hfg.html.Td
-
- setAlign(Align) - Method in class com.hfg.html.TFoot
-
- setAlign(Align) - Method in class com.hfg.html.Th
-
- setAlign(Align) - Method in class com.hfg.html.THead
-
- setAlign(Align) - Method in class com.hfg.html.Tr
-
- setAlign(Align) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setAlignedQuery(AlignedQuery) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setAlignedSeq(CharSequence) - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- setAlignedSubject(AlignedSubject) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setAlignLeaftNodeLabels(boolean) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setAlignment(SsmlAlignment) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setAlignment(SsmlAlignment) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setAlignment(SsmlAlignment) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- setAlignmentType(PairwiseAlignmentType) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setAlignWithMargins(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setAlkylatedCys(AminoAcid) - Method in class com.hfg.bio.DigestSettings
-
By specifying a modified cysteine a "virtual reduction" will be performed on
the protein before digestion.
- setAlkylatedCysteine(AminoAcid) - Method in class com.hfg.bio.proteinproperty.ReducedAnalysisMode
-
- setAllowBlank(Boolean) - Method in class com.hfg.javascript.ext.ExtModelField
-
- setAllowBlank(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidation
-
- setAllowNull(Boolean) - Method in class com.hfg.javascript.ext.ExtModelField
-
- setAllowPartialPathMatches(boolean) - Method in class com.hfg.webapp.ServletRequestDispatcher
-
Specifies whether or not registered path values can be matched to the start of
requested paths as broken by the path separator '/'.
- setAlt(String) - Method in class com.hfg.html.Applet
-
Sets the string to be displayed before the applet is loaded or in case the
applet cannot be loaded.
- setAlt(String) - Method in class com.hfg.html.Area
-
- setAlt(String) - Method in class com.hfg.html.Img
-
Sets the string to be displayed before the image is loaded or in case the
image cannot be loaded.
- setAminoAcidSet(AminoAcidSet) - Method in class com.hfg.bio.seq.Protein
-
- setAmplitude(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setAmplitude(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setAmplitude(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setAmplitude(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setAnchor(DmlTextAnchoringType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextBodyProperties
-
- setAngle(Double) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setAngle(Angle) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill
-
Specifies the direction (clockwise) for the gradient.
- setAnnotation(String) - Method in class com.hfg.xml.xsd.XsdElement
-
- setAnnotation(String) - Method in class com.hfg.xml.xsd.XsdType
-
- setAnsiThemeFont(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setApplicants(List<String>) - Method in class com.hfg.citation.PatentData
-
- setArchive(String) - Method in class com.hfg.html.Applet
-
- setArchive(String) - Method in class com.hfg.html.ObjectTag
-
This attribute may be used to specify a space-separated list of URIs for
archives containing resources relevant to the object, which may include the
resources specified by the classid and data attributes.
- setArticleNumber(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setArticleNumber(String) - Method in class com.hfg.citation.Citation
-
Specify the article number for the citation source.
- setAsciiThemeFont(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setAsciiWidth(int) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setAssembly(String) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setAssemblyAccession(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setAssemblyLevel(GenomicAssemblyLevel) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setAssemblyName(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setAssemblyReleaseType(GenomicAssemblyReleaseType) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setAssemblyVersionStatus(GenomicAssemblyVersionStatus) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setAssignGroupsToSingletons(boolean) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setAsTOC() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTagProperties
-
- setAtLeastHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
- setAtomClass(Integer) - Method in class com.hfg.chem.Atom
-
- setAttribute(String, Object) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setAttribute(String, Object) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setAttribute(String, Object) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- setAttribute(String, Object) - Method in interface com.hfg.bio.seq.BioSequence
-
- setAttribute(String, Object) - Method in class com.hfg.chem.Molecule
-
- setAttribute(String, Object) - Method in class com.hfg.html.HTMLTag
-
- setAttribute(XMLName, Object) - Method in class com.hfg.html.HTMLTag
-
- setAttribute(String, Object) - Method in class com.hfg.svg.SvgText
-
- setAttribute(String, Object) - Method in class com.hfg.util.AttributeMgr
-
- setAttribute(String, Object) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- setAttribute(XMLName, Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXMLTag
-
- setAttribute(String, Object) - Method in interface com.hfg.xml.XMLNode
-
- setAttribute(XMLName, Object) - Method in interface com.hfg.xml.XMLNode
-
- setAttribute(XMLAttribute) - Method in interface com.hfg.xml.XMLNode
-
- setAttribute(String, Object) - Method in class com.hfg.xml.XMLTag
-
- setAttribute(XMLName, Object) - Method in class com.hfg.xml.XMLTag
-
- setAttribute(XMLAttribute) - Method in class com.hfg.xml.XMLTag
-
- setAttributes(Collection<XMLAttribute>) - Method in interface com.hfg.xml.XMLNode
-
Takes a Collection of XMLAttribute objects as input.
- setAttributes(Collection<XMLAttribute>) - Method in class com.hfg.xml.XMLTag
-
Takes a Collection of XMLAttribute objects as input.
- setAuthor(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelComment
-
Specifies the author of this comment.
- setAuthor(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- setAuthors(String) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setAutoAdjustScale(boolean) - Method in class com.hfg.bio.seq.graphics.ContigPlot
-
- setAutoColor() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
- setAutoColor() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setAutoColor(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
- setAutoColor(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
- setAutoColor(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
- setAutoColor() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setAutoCommit(boolean) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setAutoCompressPictures(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- setAutoFitWidth(boolean) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
Specifies whether the column should be automatically sized in Excel to display
the entire length of numeric and date values (columns are not automatically re-sized for other data types).
- setAutoHeight() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
Specifies that the table row should determine its height based on contents.
- setAutoLineRule() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlSpacing
-
Specifies as 'auto' how the spacing between lines is calculated as stored in the line attribute.
- setAutoRedefine() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setAvailabilityTimeoutSec(Integer) - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
Specifies the maximum amount of time to wait for a connection to become available
when requesting a connection from the pool.
- setAverageMass(Double) - Method in class com.hfg.chem.Molecule
-
If the elemental composition is known, use setElementalComposition() and
the masses will be derived automatically; this method is for use in those
(hopefully) rare times when the mass is known but not the elemental composition.
- setAxisColor(Color) - Method in class com.hfg.graphics.Track
-
- setAxisColor(Color) - Method in class com.hfg.graphics.Track2D
-
- setAzimuth(float) - Method in class com.hfg.svg.filtereffect.SvgFeDistantLight
-
Direction angle for the light source on the XY plane, in degrees.
- setBackground(Color) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setBackground(String) - Method in class com.hfg.html.Body
-
Sets the background image for the page.
- setBackground(String) - Method in class com.hfg.html.Table
-
- setBackgroundColor(Color) - Method in class com.hfg.graphics.ColorSpec
-
Sets the background color; null values are allowed.
- setBackgroundColor(Color) - Method in class com.hfg.graphics.Track
-
- setBackgroundColor(Color) - Method in class com.hfg.graphics.Track2D
-
- setBackgroundColor(HTMLColor) - Method in class com.hfg.html.Body
-
Sets the background color for the page.
- setBackgroundColor(Color) - Method in class com.hfg.html.Body
-
Sets the background color for the page.
- setBackgroundColor(String) - Method in class com.hfg.html.Body
-
Sets the background color for the page.
- setBackgroundColor(HTMLColor) - Method in class com.hfg.html.Table
-
Sets the background color for the table.
- setBackgroundColor(Color) - Method in class com.hfg.html.Table
-
Sets the background color for the table.
- setBackgroundColor(String) - Method in class com.hfg.html.Table
-
Sets the background color for the table.
- setBackgroundColor(HTMLColor) - Method in class com.hfg.html.Td
-
Sets the background color for the table cell.
- setBackgroundColor(Color) - Method in class com.hfg.html.Td
-
Sets the background color for the table cell.
- setBackgroundColor(String) - Method in class com.hfg.html.Td
-
Sets the background color for the table cell.
- setBackgroundColor(HTMLColor) - Method in class com.hfg.html.Th
-
Sets the background color for the header cell.
- setBackgroundColor(String) - Method in class com.hfg.html.Th
-
Sets the background color for the header cell.
- setBackgroundColor(Color) - Method in class com.hfg.html.Th
-
Sets the background color for the header cell.
- setBackgroundColor(HTMLColor) - Method in class com.hfg.html.Tr
-
Sets the background color for the table row.
- setBackgroundColor(Color) - Method in class com.hfg.html.Tr
-
Sets the background color for the table row.
- setBackgroundColor(String) - Method in class com.hfg.html.Tr
-
Sets the background color for the table row.
- setBackgroundColor(Color) - Method in class com.hfg.javascript.HoverboardMaker
-
- setBackgroundColor(String) - Method in class com.hfg.javascript.TooltipJS
-
- setBackgroundColor(Color) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setBackgroundColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- setBarStyleClass(String) - Method in class com.hfg.math.HistogramSvgSettings
-
- setBaseColWidth(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Specifies the number of characters of the maximum digit width of the normal style's font.
- setBaseColWidth(float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Specifies the number of characters of the maximum digit width of the normal style's font.
- setBaseColWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Specifies the number of characters of the maximum digit width of the normal style's font.
- setBasedOn(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setBasedOn(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setBasedOn(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setBaseFrequency(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setBaseQueryURL(String) - Method in class com.hfg.citation.ncbi.NCBI_eFetch
-
- setBaseType(XsdComplexType) - Method in class com.hfg.xml.xsd.XsdComplexType
-
- setBefore(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlSpacing
-
Specifies the spacing that should be added above the first line in this paragraph
in the document in absolute units.
- setBegin(int) - Method in class com.hfg.bio.DigestFragment
-
- setBeginFragIndex(int) - Method in class com.hfg.bio.DigestFragment
-
- setBias(Float) - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Specifies the bias - the fraction of this codon's use as compared to the other codons that
code for the same amino acid.
- setBias(float) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setBinDir(File) - Static method in class com.hfg.image.ImageMagick
-
Sets the location of the ImageMagick bin dir.
- setBioprojectAccession(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setBiosampleAccession(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setBioSequenceFactory(MoleculeFactory<T>) - Method in class com.hfg.chem.format.ReadableChemFormatBase
-
- setBLAST_Databases(Collection<BLAST_Database>) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- setBLAST_Program(BLAST_Program) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- setBLTL_OnChangeCallback(String) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
While dynamically adjusting the branch length traversal limit to group closely
related leaf nodes, this callback, if defined, is invoked so the changing BLTL
value can be displayed.
- setBLTL_SelectionCompleteCallback(String) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
When the dynamic adjustment of the branch length traversal limit to group closely
related leaf nodes is completed (end of drag event), this callback, if defined, is invoked.
- setBold() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFont
-
- setBold() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setBold(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setBold(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setBondOrder(Integer) - Method in class com.hfg.chem.CovalentBond
-
- setBorder(int) - Method in class com.hfg.html.Frameset
-
- setBorder(int) - Method in class com.hfg.html.Img
-
- setBorder(int) - Method in class com.hfg.html.ObjectTag
-
Deprecated.
- setBorder(int) - Method in class com.hfg.html.Table
-
- setBorder(String) - Method in class com.hfg.javascript.HoverboardMaker
-
- setBorder(String) - Method in class com.hfg.javascript.TooltipJS
-
- setBorder(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- setBorder(SsmlBorder) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setBorder(SsmlBorder) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setBorder(SsmlBorder) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- setBorderColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- setBottom(GfxSize) - Method in class com.hfg.graphics.PageMargins
-
- setBottom(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlEffectExtent
-
Specifies the additional extent to add to the bottom of the drawing.
- setBottom(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twentieths of a point) between the bottom of the text
margins for the main document and the bottom of the page for all pages in this section.
- setBottom(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setBottom(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setBoundary(String) - Method in class com.hfg.util.mime.MultipartMimeGenerator
-
- setBranchLengthTraversalLimit(Float) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setBufferSize(int) - Method in class com.hfg.util.io.InputStreamSegment
-
- setBuild(String) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setBuiltinId(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- setBWMode(DmlBlackWhiteMode) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShapeProperties
-
- setBWMode(DmlBlackWhiteMode) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
- setCachedContentFile(File) - Method in class com.hfg.util.mime.MimeEntity
-
Sets the file in which the entity's content will be cached.
- setCalculateStatisticalScores(boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
Specifies whether or not to calculate an E-value, P-value, and Z score by
generating background alignments.
- setCalendar(Calendar) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- setCallNumber(String) - Method in class com.hfg.citation.Citation
-
Specify the library call number for the citation source.
- setCantSplit() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
Specifies that this table row should not be separated by a page break from the row that follows it.
- setCapType(DmlLineEndCapType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the line end cap type.
- setCaseInsensitive(boolean) - Method in class com.hfg.util.BYPStringPattern
-
- setCatalog(String) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setCell(int, String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- setCellPadding(int) - Method in class com.hfg.html.Table
-
- setCellProperties(WmlTableCellProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCell
-
- setCellRange(CellRange) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidation
-
- setCellRange(CellRange) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- setCellRef(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- setCellSpacing(int) - Method in class com.hfg.html.Table
-
- setCenter(Point2D) - Method in class com.hfg.svg.SvgCircle
-
- setChainId(String) - Method in class com.hfg.bio.seq.SeqLocation
-
- setChains(Collection<Protein>) - Method in class com.hfg.bio.seq.Protein
-
Specifies the protein's chains.
- setChar(char) - Method in class com.hfg.html.Col
-
Alignment char, e.g.
- setChar(char) - Method in class com.hfg.html.Colgroup
-
Alignment char, e.g.
- setChar(char) - Method in class com.hfg.html.TBody
-
Alignment char, e.g.
- setChar(char) - Method in class com.hfg.html.TFoot
-
Alignment char, e.g.
- setChar(char) - Method in class com.hfg.html.THead
-
Alignment char, e.g.
- setCharacterEncoding(String) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- setCharAt(int, char) - Method in class com.hfg.util.StringBuilderPlus
-
- setCharge(Integer) - Method in class com.hfg.chem.Atom
-
- setCharOffset(int) - Method in class com.hfg.html.Col
-
Offset for the alignment char.
- setCharOffset(int) - Method in class com.hfg.html.Colgroup
-
Offset for the alignment char.
- setCharOffset(int) - Method in class com.hfg.html.TBody
-
Offset for the alignment char.
- setCharOffset(int) - Method in class com.hfg.html.TFoot
-
Offset for the alignment char.
- setCharOffset(int) - Method in class com.hfg.html.THead
-
Offset for the alignment char.
- setCharset(Charset) - Method in class com.hfg.html.Script
-
Sets the charset.
- setChecked(boolean) - Method in class com.hfg.html.InputCheckbox
-
- setChecked(boolean) - Method in class com.hfg.html.InputRadio
-
- setChemicalFormula(String) - Method in class com.hfg.chem.Molecule
-
- setChiralityOrder(Atom.ChiralityOrder) - Method in class com.hfg.chem.Atom
-
- setChromosome(String) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setCladogramStyle(CladogramStyle) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setClass(String) - Method in class com.hfg.html.Body
-
Sets the class attribute to the specified value.
- setClass(String) - Method in class com.hfg.html.Col
-
- setClass(String) - Method in class com.hfg.html.Colgroup
-
- setClass(String) - Method in class com.hfg.html.Div
-
- setClass(String) - Method in class com.hfg.html.Frame
-
- setClass(String) - Method in class com.hfg.html.H1
-
- setClass(String) - Method in class com.hfg.html.H2
-
- setClass(String) - Method in class com.hfg.html.H3
-
- setClass(String) - Method in class com.hfg.html.Hr
-
- setClass(String) - Method in class com.hfg.html.HTMLTag
-
- setClass(String) - Method in class com.hfg.html.IFrame
-
- setClass(String) - Method in class com.hfg.html.Label
-
- setClass(String) - Method in class com.hfg.html.Li
-
- setClass(String) - Method in class com.hfg.html.Link
-
- setClass(String) - Method in class com.hfg.html.ObjectTag
-
- setClass(String) - Method in class com.hfg.html.Ol
-
- setClass(String) - Method in class com.hfg.html.OptGroup
-
- setClass(String) - Method in class com.hfg.html.Option
-
- setClass(String) - Method in class com.hfg.html.P
-
- setClass(String) - Method in class com.hfg.html.Pre
-
- setClass(String) - Method in class com.hfg.html.Select
-
- setClass(String) - Method in class com.hfg.html.Span
-
- setClass(String) - Method in class com.hfg.html.Table
-
- setClass(String) - Method in class com.hfg.html.TBody
-
- setClass(String) - Method in class com.hfg.html.Td
-
- setClass(String) - Method in class com.hfg.html.Textarea
-
- setClass(String) - Method in class com.hfg.html.TFoot
-
- setClass(String) - Method in class com.hfg.html.Th
-
- setClass(String) - Method in class com.hfg.html.THead
-
- setClass(String) - Method in class com.hfg.html.Tr
-
- setClass(String) - Method in class com.hfg.html.Ul
-
- setClass(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setClass(String) - Method in class com.hfg.svg.SvgForeignObject
-
- setClass(String) - Method in class com.hfg.svg.SvgGroup
-
- setClass(String) - Method in class com.hfg.svg.SvgSwitch
-
- setClass(String) - Method in class com.hfg.svg.SvgText
-
- setClass(Class) - Method in class com.hfg.util.StackTraceElementFilter
-
- setClassId(String) - Method in class com.hfg.html.ObjectTag
-
- setCleanGrammarProofState() - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setCleanSpellingProofState() - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setClientHost(String) - Method in interface com.hfg.util.User
-
- setClientHost(String) - Method in class com.hfg.util.UserImpl
-
- setClientHostIP(String) - Method in interface com.hfg.util.User
-
- setClientHostIP(String) - Method in class com.hfg.util.UserImpl
-
- setClientInfo(String, String) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setClientInfo(Properties) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setClip(int, int, int, int) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setClip(Shape) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setClone(Clone) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setClone(Clone) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setCode(String) - Method in class com.hfg.html.Applet
-
Specifies the name of the class file to execute.
- setCodebase(String) - Method in class com.hfg.html.Applet
-
- setCodebase(String) - Method in class com.hfg.html.ObjectTag
-
- setCodetype(String) - Method in class com.hfg.html.ObjectTag
-
This attribute specifies the content type of data expected when downloading
the object specified by classid.
- setCodonUsage(CodonUsage) - Method in class com.hfg.bio.seq.translation.Codon
-
- setColIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
Specifies the column index as a 1-based number.
- setColKey(CK) - Method in class com.hfg.util.collection.MatrixCell
-
- setColor(Color) - Method in class com.hfg.bio.AAGroup
-
- setColor(Color) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setColor(Color) - Method in class com.hfg.bio.seq.Exon
-
- setColor(Color) - Method in class com.hfg.bio.seq.Gene
-
- setColor(Color) - Method in class com.hfg.graphics.Gene2D
-
- setColor(Color) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setColor(Color) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorder
-
- setColor(Color) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFont
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the color value for row/column text headings and gridlines.
- setColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeMerge
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setColorInterpolationFilters(ColorInterpolationFilters) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setColorist(Colorist) - Method in class com.hfg.graphics.DataStylistGenerator
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.effect.DmlEffectRef
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlFillRef
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientStop
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlSolidFill
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontRef
-
- setColorModel(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineRef
-
- setColorScale(SsmlColorScale) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfColorScaleRule
-
- setColorScale(NonlinearColorScale) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfColorScaleRule
-
- setColorSpec(ColorSpec) - Method in class com.hfg.graphics.DataStylist
-
- setColorSpec(ColorSpec) - Method in class com.hfg.graphics.DataStylistGenerator
-
- setColorSpec(ColorSpec) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
Convenience method for setting both the color and the fill.
- setCols(String) - Method in class com.hfg.html.Frameset
-
- setCols(int) - Method in class com.hfg.html.Textarea
-
- setColSpan(int) - Method in class com.hfg.html.Td
-
- setColSpan(int) - Method in class com.hfg.html.Th
-
- setColumnsRightToLeft(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextBodyProperties
-
- setCommand(String) - Method in class com.hfg.util.Executor
-
Sets the command to execute.
- setCommandLineParams(String) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Additional (optional) command line parameters for the end of the BLAST command
- setCommandLineParams(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
Additional (optional) command line parameters for the end of the Muscle command
- setComment(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setComments(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setCommonName(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setComparisonLength(Integer) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setComplexScriptBold() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setComplexScriptFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMajorFont
-
- setComplexScriptFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMinorFont
-
- setComplexScriptItalics() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setComplexScriptSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
Specifies a positive measurement of complex script font size.
- setComplexScriptThemeFont(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setComposite(Composite) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setCompoundLineType(DmlCompoundLineType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the compound line type.
- setCompressionThreshold(int) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setCompressionThreshold(int) - Method in class com.hfg.bio.seq.format.BufferedSeqReader
-
- setCompressionThreshold(int) - Method in class com.hfg.bio.seq.NucleicAcidFactory
-
- setCondense(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setConfig(XlsxConfig) - Method in class com.hfg.xml.msofficexml.xlsx.Xlsx
-
- setConnectTimeoutInSeconds(Integer) - Method in class com.hfg.sql.jdbc.JDBCConnectionSettings
-
- setContactInfo(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setContent(CharSequence) - Method in class com.hfg.html.Script
-
- setContent(CharSequence) - Method in class com.hfg.svg.SvgScript
-
- setContent(String) - Method in class com.hfg.util.mime.MimeEntity
-
- setContent(CharSequence) - Method in class com.hfg.xml.msofficexml.docx.drawingml.text.DmlText
-
- setContent(CharSequence) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlText
-
- setContent(CharSequence) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setContent(CharSequence) - Method in class com.hfg.xml.XMLCDATA
-
- setContent(String) - Method in class com.hfg.xml.XMLComment
-
- setContent(CharSequence) - Method in interface com.hfg.xml.XMLContainer
-
- setContent(CharSequence) - Method in class com.hfg.xml.XMLContainerImpl
-
- setContent(int) - Method in class com.hfg.xml.XMLContainerImpl
-
- setContent(CharSequence) - Method in class com.hfg.xml.XMLTag
-
- setContentAttribute(String) - Method in class com.hfg.html.Meta
-
- setContentDisposition(MimeContentDisposition) - Method in class com.hfg.util.mime.MimeEntity
-
- setContentHandler(ContentHandler) - Method in class com.hfg.xml.parser.SaxyParser
-
- setContentTransferEncoding(String) - Method in class com.hfg.util.mime.MimeEntity
-
- setContentType(MimeType) - Method in class com.hfg.util.mime.MimeEntity
-
- setContentType(OfficeOpenXMLContentType) - Method in class com.hfg.xml.msofficexml.RelationshipType
-
- setContextualSpacing(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Specifies that this paragraph should use contextual spacing.
- setContig(String) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setControlPoint(Point2D.Float) - Method in class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- setCoords(String) - Method in class com.hfg.html.Area
-
- setCreator(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setCredentials(LoginCredentials) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setCredentials(LoginCredentials) - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- setCredentials(LoginCredentials) - Method in class com.hfg.util.io.ProxyConfig
-
- setCredentials(LoginCredentials) - Method in interface com.hfg.util.io.RemoteFileLister
-
- setCredentialsMgrKey(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setCSS(CSS) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.HtmlToWmlConverter
-
Specify associated CSS to use during conversion.
- setCSSClass(String) - Method in class com.hfg.graphics.DataStylist
-
- setCSSClass(String) - Method in class com.hfg.graphics.DataStylistGenerator
-
- setCssStyle(String) - Method in class com.hfg.util.collection.DataColumn
-
- setCTerminalGroup(CTerminalGroup) - Method in class com.hfg.bio.AminoAcidSet
-
- setCTerminalpKa(CTerminalGroup, float, Charge) - Method in class com.hfg.bio.KaSet
-
- setCTerminalpKa(AminoAcid, float, Charge) - Method in class com.hfg.bio.KaSet
-
- setCTerminalSidechainpKa(AminoAcid, float, Charge) - Method in class com.hfg.bio.KaSet
-
- setCustomField(String, String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setCustomHeight(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
- setCx(int) - Method in class com.hfg.svg.SvgCircle
-
- setCx(float) - Method in class com.hfg.svg.SvgCircle
-
- setCx(double) - Method in class com.hfg.svg.SvgCircle
-
- setCx(int) - Method in class com.hfg.svg.SvgEllipse
-
- setCy(int) - Method in class com.hfg.svg.SvgCircle
-
- setCy(float) - Method in class com.hfg.svg.SvgCircle
-
- setCy(double) - Method in class com.hfg.svg.SvgCircle
-
- setCy(int) - Method in class com.hfg.svg.SvgEllipse
-
- setDark1(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setDark2(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setDash(DmlLineDash) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the dash type.
- setDash(DmlPresetLineDashType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the dash type.
- setData(String) - Method in class com.hfg.html.ObjectTag
-
- setData(String) - Method in class com.hfg.svg.SvgPath
-
- setData(List<V>) - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- setData(byte[]) - Method in class com.hfg.util.io.FileBytes
-
- setData(InputStream) - Method in class com.hfg.util.io.FileBytes
-
- setData(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setData(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setData(float) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setData(double) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setDataIndex(ExtModelField) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setDataIndex(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setDataSource(NCBITaxonomyDataSource) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setDataTable(DataTable) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- setDataType(ExcelDataType) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelData
-
Specifies the data type attribute.
- setDate(PreparedStatement, int, Date) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setDate().
- setDate(PreparedStatement, int, Date) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setDate().
- setDateCompleted(Date) - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- setDateCreated(Date) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setDateCreated(ZonedDateTime) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setDateFormat(String) - Method in class com.hfg.javascript.ext.ExtModelField
-
- setDateFormatSymbols(DateFormatSymbols) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- setDateModified(Date) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setDateModified(ZonedDateTime) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setDateRevised(Date) - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- setDayOfMonthSpec(String) - Method in class com.hfg.util.scheduler.CronSchedule
-
- setDayOfWeekSpec(String) - Method in class com.hfg.util.scheduler.CronSchedule
-
- setDebug(String) - Method in class com.hfg.anttask.FileProperty
-
- setDeclare() - Method in class com.hfg.html.ObjectTag
-
When present, this boolean attribute makes the current OBJECT definition a
declaration only.
- setDefault(XMLNamespace) - Method in class com.hfg.xml.XMLNamespaceSet
-
- setDefaultAsciiWidth(int) - Static method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setDefaultColumnWidth(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet
-
- setDefaultColWidth(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default column width measured as the number of characters of the maximum digit width of the normal style's font.
- setDefaultColWidth(float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default column width measured as the number of characters of the maximum digit width of the normal style's font.
- setDefaultColWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default column width measured as the number of characters of the maximum digit width of the normal style's font.
- setDefaultDelimiter(String) - Static method in class com.hfg.util.StringBuilderPlus
-
- setDefaultEllipticCurveSpec(String) - Static method in class com.hfg.util.CryptoUtil
-
Sets the default SunEC-implemented elliptic curve spec used.
- setDefaultExecutable(String) - Static method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setDefaultExecutableDir(File) - Static method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setDefaultFont(Font) - Method in class com.hfg.xml.msofficexml.docx.Docx
-
Convenience method for setting the default font for the document.
- setDefaultFont(SsmlFont) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- setDefaultHeaderColor(Color) - Static method in class com.hfg.javascript.PopupMenuJS
-
- setDefaultHideWithCommentsForLegacyBrowsers(boolean) - Static method in class com.hfg.xml.XMLCDATA
-
- setDefaultLabelFont(Font) - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- setDefaultLineSeparator(String) - Static method in class com.hfg.util.StringBuilderPlus
-
Sets an override for the default line separator of System.getProperty("line.separator").
- setDefaultMathContext(MathContext) - Static method in class com.hfg.units.BaseSIUnitConverter
-
- setDefaultMathContext(MathContext) - Static method in class com.hfg.units.Unit
-
Sets the default MathContext to specify precision and rounding during operations.
- setDefaultMenuColor(Color) - Static method in class com.hfg.javascript.PopupMenuJS
-
- setDefaultPin(boolean) - Static method in class com.hfg.javascript.PopupMenuJS
-
- setDefaultPort(int) - Method in class com.hfg.sql.jdbc.RDBMS
-
- setDefaultProteinAnalysisMode(ProteinAnalysisMode) - Method in class com.hfg.bio.KaSet
-
- setDefaultRDBMS(RDBMS) - Static method in class com.hfg.sql.table.DatabaseTable
-
- setDefaultRowHeight(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet
-
- setDefaultRowHeight(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default row height (in points).
- setDefaultRowHeight(float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default row height (in points).
- setDefaultRowHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
Sets the default row height.
- setDefaults() - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- setDefaultSelectedTabColor(Color) - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- setDefaultSelectedTabFontColor(Color) - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- setDefaultSettings(BLAST_Settings) - Static method in class com.hfg.bio.seq.alignment.blast.BLAST
-
- setDefaultSettings(MuscleSettings) - Static method in class com.hfg.bio.seq.alignment.muscle.Muscle
-
- setDefaultSize(int) - Static method in class com.hfg.xml.parser.XMLStringBuffer
-
- setDefaultTmpDirRoot(File) - Static method in class com.hfg.webapp.HfgHttpServletRequest
-
- setDefaultUnselectedTabColor(Color) - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- setDefaultUnselectedTabFontColor(Color) - Static method in class com.hfg.html.custom.TabbedPaneSet
-
- setDefaultUserAgentString(String) - Static method in class com.hfg.util.io.HTTPRemoteFile
-
- setDefaultUserAgentString(String) - Static method in class com.hfg.util.io.HTTPRemoteFileLister
-
Sets the default user agent string to use during communication with the server.
- setDefaultXMLNamespaceDeclaration(XMLNamespace) - Method in class com.hfg.xml.XMLTag
-
- setDefer(boolean) - Method in class com.hfg.html.Script
-
When set, this boolean attribute provides a hint to the user agent that the
script is not going to generate any document content (e.g., no "document.write"
in javascript) and thus, the user agent can continue parsing and rendering.
- setDefinedName(String, SsmlWorksheet, String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbook
-
- setDelay(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setDelay(int) - Method in class com.hfg.javascript.TooltipJS
-
- setDelimiter(String) - Method in class com.hfg.util.StringBuilderPlus
-
- setDescription(String) - Method in class com.hfg.bio.DbXref
-
- setDescription(String) - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- setDescription(String) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Database
-
- setDescription(CharSequence) - Method in interface com.hfg.bio.seq.BioSequence
-
- setDescription(CharSequence) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setDescription(String) - Method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeature
-
- setDescription(String) - Method in class com.hfg.bio.seq.Gene
-
- setDescription(CharSequence) - Method in class com.hfg.bio.seq.NucleicAcid
-
- setDescription(CharSequence) - Method in class com.hfg.bio.seq.Protein
-
Specifies the protein's description.
- setDescription(String) - Method in class com.hfg.graphics.Gene2D
-
- setDescription(String) - Method in class com.hfg.graphics.Track
-
- setDescription(String) - Method in class com.hfg.graphics.Track2D
-
- setDescription(String) - Method in class com.hfg.util.collection.DataColumn
-
- setDescription(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- setDescription(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawingObjNonVisualProperties
-
- setDescription(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setDescription(String) - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- setDescription(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- setDest(File) - Method in class com.hfg.anttask.GetWild
-
Specifies where to copy the source file.
- setDestdir(File) - Method in class com.hfg.anttask.GetWild
-
Specifies the local directory to copy the remote file into
(preserving the file's remote name).
- setDifferentFirst(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setDifferentOddEven(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setDiffuseConstant(float) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
Sets the kd in Phong lighting model.
- setDimension(CellRange) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setDimensions(GfxSize2D) - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- setDimensionsToContentBoundsBox() - Method in class com.hfg.svg.SVG
-
- setDir(File) - Method in class com.hfg.anttask.FileProperty
-
- setDirty(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlComplexField
-
- setDirty(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlSimpleField
-
- setDirtyGrammarProofState() - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setDirtySpellingProofState() - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setDisabled(boolean) - Method in class com.hfg.html.custom.CheckboxSpan
-
- setDisabled(boolean) - Method in class com.hfg.html.InputButton
-
- setDisabled(boolean) - Method in class com.hfg.html.InputCheckbox
-
- setDisabled(boolean) - Method in class com.hfg.html.InputRadio
-
- setDisabled(boolean) - Method in class com.hfg.html.InputSubmit
-
- setDisabled(boolean) - Method in class com.hfg.html.InputText
-
- setDisabled(boolean) - Method in class com.hfg.html.OptGroup
-
- setDisabled(boolean) - Method in class com.hfg.html.Option
-
- setDisabled(boolean) - Method in class com.hfg.html.Select
-
- setDisabled(boolean) - Method in class com.hfg.html.Textarea
-
- setDisabledClass(String) - Method in class com.hfg.html.custom.CheckboxSpan
-
- setDisallowArrowheadChanges(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPictureLocks
-
Specifies whether or not to disallow arrowhead changes.
- setDisallowAspectRatioChange(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow aspect ratio change.
- setDisallowAspectRatioChange(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPictureLocks
-
Specifies whether or not to disallow aspect ratio change.
- setDisallowChildShapeSelection(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow selection of child shapes.
- setDisallowShapeGrouping(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow shape grouping.
- setDisallowShapeMovement(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow movement of shapes.
- setDisallowShapeResize(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow resizing of shapes.
- setDisallowShapeSelection(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlGraphicFrameLocks
-
Specifies whether or not to disallow selection of shapes.
- setDisplayLabels(boolean) - Method in class com.hfg.bio.seq.graphics.ContigPlot
-
- setDisplayRegion(int, int) - Method in class com.hfg.graphics.Gene2D
-
- setDistance(String, String, Float) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- setDistance(Float) - Method in class com.hfg.network.Edge
-
- setDivision(NCBIGenBankDivision) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setDivisor(float) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setDoctype(Doctype) - Method in class com.hfg.html.HTMLDoc
-
- setDoctype(Doctype) - Method in class com.hfg.xml.XMLBasedDoc
-
- setDoctype(Doctype) - Method in class com.hfg.xml.XMLDoc
-
- setDocument(Docx) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSubDoc
-
- setDocumentLocator(Locator) - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- setDOI(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setDOI(String) - Method in class com.hfg.citation.Citation
-
Specifies the digital object identifier (DOI) for the citation.
- setDomain(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setDomain(String) - Method in class com.hfg.security.LoginCredentials
-
- setDomain(String) - Method in interface com.hfg.util.User
-
- setDomain(String) - Method in class com.hfg.util.UserImpl
-
- setDomainCommonName(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setDonorChainId(String) - Method in class com.hfg.bio.seq.ProteinXLink
-
- setDonorSpliceSite(CharSequence) - Method in class com.hfg.bio.seq.genomic.Intron
-
- setDouble(PreparedStatement, int, Double) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setDouble().
- setDraggable(boolean) - Method in class com.hfg.html.Div
-
- setDraggable(boolean) - Method in class com.hfg.html.HTMLTag
-
- setDraggable(boolean) - Method in class com.hfg.html.Label
-
- setDraggable(boolean) - Method in class com.hfg.html.Span
-
- setDraggable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
Specifies whether the column header can be reordered by dragging.
- setDrawingAnchor(SsDrawDrawingAnchor) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.WorksheetDrawing
-
- setDrawingIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.part.SsmlDrawingPart
-
- setDriverClassName(String) - Method in class com.hfg.sql.jdbc.RDBMS
-
- setDTDHandler(DTDHandler) - Method in class com.hfg.xml.parser.SaxyParser
-
- setDumpMatrices(boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setDx(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
The amount (delta) to offset the input graphic along the x-axis.
- setDx(String) - Method in class com.hfg.svg.SvgText
-
Sets a relative (delta) X coordinate adjustment to the text position.
- setDy(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
The amount (delta) to offset the input graphic along the y-axis.
- setDy(String) - Method in class com.hfg.svg.SvgText
-
Sets a relative (delta) Y coordinate adjustment to the text position.
- setEastAsianFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMajorFont
-
- setEastAsianFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMinorFont
-
- setEastAsiaThemeFont(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setEdgeMode(MatrixEdgeMode) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setEditMode(SsDrawTwoCellAnchor.EditMode) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor
-
Specifies how the drawing should be moved and/or resized when the rows and columns
between the start and end anchors are resized, or when additional rows or columns are added.
- setEditor(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setElement(XMLTag) - Method in class com.hfg.xml.XMLAttribute
-
- setElementalComposition(Map<Element, Float>) - Method in class com.hfg.chem.Molecule
-
- setElevation(float) - Method in class com.hfg.svg.filtereffect.SvgFeDistantLight
-
Direction angle for the light source on the YZ plane, in degrees.
- setEmail(String) - Method in interface com.hfg.util.User
-
- setEmail(String) - Method in class com.hfg.util.UserImpl
-
- setEMBL_Code(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setEmptyCellText(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setEnableDynamicGrouping(boolean) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
When outputting the tree in SVG, this option allows for dynamically adjusting
the branch length traversal limit to group closely related leaf nodes.
- setEncoding(Charset) - Method in class com.hfg.html.HTMLDoc
-
- setEncoding(Charset) - Method in class com.hfg.xml.XMLBasedDoc
-
- setEncoding(Charset) - Method in class com.hfg.xml.XMLDoc
-
- setEnctype(String) - Method in class com.hfg.html.Form
-
- setEnd(int) - Method in class com.hfg.bio.DigestFragment
-
- setEnd(Integer) - Method in class com.hfg.bio.seq.SeqLocation
-
- setEnd(Integer) - Method in class com.hfg.math.IntRange
-
Deprecated.
- setEnd(T) - Method in class com.hfg.math.Range
-
- setEndFragIndex(int) - Method in class com.hfg.bio.DigestFragment
-
- setEndLocation(int) - Method in class com.hfg.bio.seq.Gene
-
- setEndLocation(int) - Method in class com.hfg.graphics.Gene2D
-
- setEndProperties(WmlStructuredDocumentTagEndProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTag
-
- setEntityResolver(EntityResolver) - Method in class com.hfg.xml.parser.SaxyParser
-
- setEqualAverage(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setErrorHandler(ErrorHandler) - Method in class com.hfg.xml.parser.SaxyParser
-
- setEscapeProcessing(Boolean) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setEValue(Float) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setEValue(Float) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Expect value (E) for saving hits.
- setEValue(Float) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setExactHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
- setExcludedFromRefSeq(boolean) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setExcludedP1PrimeResidues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP1Residues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP2PrimeResidues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP2Residues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP3Residues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP4Residues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP5Residues(String) - Method in class com.hfg.bio.Protease
-
- setExcludedP6Residues(String) - Method in class com.hfg.bio.Protease
-
- setExecutable(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setExecutableDir(File) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- setExecutableDir(File) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setExecutedCmd(String) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- setExecutedCmd(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- setExitStatus(Integer) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- setExitStatus(Integer) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- setExpandedColumnCount(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelTable
-
- setExpires(Date) - Method in class com.hfg.webapp.HfgCookie
-
- setExponent(int) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setExponent(int) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setExponent(int) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setExponent(int) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setExtend(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setExtension(String) - Method in class com.hfg.xml.msofficexml.docx.part.WmlContentType
-
- setExtension(String) - Method in class com.hfg.xml.msofficexml.OfficeOpenXMLContentType
-
- setExtension(SsmlCfRule) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setExtension(SsmlDataBar) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- setExtensionPenalty(Float) - Method in class com.hfg.bio.seq.alignment.GapPenalties
-
- setFeature(XlsxConfig.Feature, boolean) - Method in class com.hfg.xml.msofficexml.xlsx.XlsxConfig
-
- setFeature(String, boolean) - Method in class com.hfg.xml.parser.SaxyParser
-
- setFetchDirection(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Gives a hint as to the direction in which the rows in this
ResultSet object will be processed.
- setFetchDirection(Integer) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setFetchSize(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Gives the JDBC driver a hint as to the number of rows that should
be fetched from the database when more rows are needed for this
ResultSet object.
- setFetchSize(Integer) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setField(String, String) - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- setField(String, String) - Method in class com.hfg.ldap.LDAP_User
-
- setField(String, String) - Method in interface com.hfg.util.User
-
- setField(String, String) - Method in class com.hfg.util.UserImpl
-
- setFields(Collection<DatabaseField>) - Method in class com.hfg.sql.SQLInsert
-
- setFields(Collection<DatabaseField>) - Method in class com.hfg.sql.SQLUpdate
-
- setFieldType(ExtFieldType) - Method in class com.hfg.javascript.ext.ExtGridCol
-
Specifies the field type to use for the column's model.
- setFile(String) - Method in class com.hfg.anttask.FileProperty
-
- setFile(File) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_DatabaseMgr
-
- setFile(File) - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- setFileCacheDir(File) - Method in class com.hfg.util.mime.MultipartMimeParser
-
- setFilename(String) - Method in class com.hfg.util.mime.MimeContentDisposition
-
- setFilePath(String) - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- setFilePath(String) - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- setFilePath(String) - Method in interface com.hfg.util.io.RemoteFileLister
-
- setFileTransferMode(int) - Method in class com.hfg.util.io.FTPRemoteFile
-
Use FTP.ASCII_FILE_TYPE or FTP.BINARY_FILE_TYPE (default).
- setFill(Color) - Method in class com.hfg.svg.SvgCircle
-
- setFill(Color) - Method in class com.hfg.svg.SvgEllipse
-
- setFill(Color) - Method in class com.hfg.svg.SvgPath
-
- setFill(Color) - Method in class com.hfg.svg.SvgPolygon
-
- setFill(Color) - Method in class com.hfg.svg.SvgPolyline
-
- setFill(Color) - Method in class com.hfg.svg.SvgRect
-
- setFill(Color) - Method in class com.hfg.svg.SvgText
-
- setFill(DmlFill) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlShapeProperties
-
Specifies the fill type that should be used for the shape.
- setFill(DmlFill) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the fill type that should be used for the shape.
- setFill(Color) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the color for a solid fill to be used for the shape.
- setFill(Color) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setFill(DmlFill) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
Specifies the fill type that should be used for the shape.
- setFill(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
Specifies the color for a solid fill to be used for the shape.
- setFill(SsmlFill) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setFill(SsmlFill) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setFill(SsmlFill) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- setFillOpacity(int) - Method in class com.hfg.svg.SvgCircle
-
- setFillOpacity(int) - Method in class com.hfg.svg.SvgEllipse
-
- setFillOpacity(int) - Method in class com.hfg.svg.SvgPolygon
-
- setFillOpacity(int) - Method in class com.hfg.svg.SvgPolyline
-
- setFillOpacity(float) - Method in class com.hfg.svg.SvgRect
-
Specifies a value for the fill opacity of this rectangle.
- setFilter(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setFilter(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setFilter(String) - Method in class com.hfg.svg.SvgGroup
-
- setFilter(String) - Method in class com.hfg.svg.SvgSwitch
-
- setFilter(String) - Method in class com.hfg.svg.SvgText
-
- setFilterList(List<RemoteFileFilter>) - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- setFilterList(List<RemoteFileFilter>) - Method in interface com.hfg.util.io.RemoteFileLister
-
- setFilterUnits(FilterCoordinateSystem) - Method in class com.hfg.svg.SvgFilter
-
- setFirstLine(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlIndentation
-
Specifies the indentation added to the first line of this paragraph in absolute units.
- setFirstName(String) - Method in class com.hfg.citation.Author
-
- setFirstName(String) - Method in interface com.hfg.util.User
-
- setFirstName(String) - Method in class com.hfg.util.UserImpl
-
- setFlag(CSSMediaQuery.Flag) - Method in class com.hfg.css.CSSMediaQuery
-
- setFlag(String) - Method in class com.hfg.util.collection.DataTable
-
- setFlex(Integer) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setFlip(DmlGradientFill.TileRectFlip) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill
-
Specifies the direction in which to flip the gradient while tiling.
- setFlipHoriz(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setFlipVert(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setFloat(PreparedStatement, int, Float) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setFloat().
- setFloodColor(Color) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setFloodOpacity(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setFollowedHyperlink(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setFont(Font) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setFont(Font) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setFont(String) - Method in class com.hfg.javascript.HoverboardMaker
-
- setFont(String) - Static method in class com.hfg.javascript.PopupMenuJS
-
- setFont(String) - Method in class com.hfg.javascript.TooltipJS
-
- setFont(Font) - Method in class com.hfg.math.HistogramSvgSettings
-
- setFont(Font) - Method in class com.hfg.svg.SVG
-
- setFont(Font) - Method in class com.hfg.svg.SvgGenerationSettings
-
- setFont(Font) - Method in class com.hfg.svg.SvgGroup
-
Sets both the 'font-family' and 'font-size' attributes based on the Font data.
- setFont(Font) - Method in class com.hfg.svg.SvgLink
-
- setFont(Font) - Method in class com.hfg.svg.SvgSwitch
-
Sets both the 'font-family' and 'font-size' attributes based on the Font data.
- setFont(Font) - Method in class com.hfg.svg.SvgSymbol
-
- setFont(Font) - Method in class com.hfg.svg.SvgText
-
- setFont(Font) - Method in class com.hfg.util.collection.DataColumn
-
- setFont(Font) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setFont(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setFont(Font) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setFont(Font) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setFont(SsmlFont) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setFont(Font) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setFont(SsmlFont) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setFont(SsmlFont) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- setFontColor(String) - Method in class com.hfg.javascript.HoverboardMaker
-
- setFontColor(String) - Method in class com.hfg.javascript.TooltipJS
-
- setFontFamily(String) - Method in class com.hfg.svg.SvgGroup
-
- setFontFamily(String) - Method in class com.hfg.svg.SvgSwitch
-
- setFontName(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFont
-
- setFontSize(String) - Method in class com.hfg.javascript.HoverboardMaker
-
- setFontSize(String) - Static method in class com.hfg.javascript.PopupMenuJS
-
- setFontSize(String) - Method in class com.hfg.javascript.TooltipJS
-
- setFontSize(String) - Method in class com.hfg.svg.SvgGroup
-
- setFontSize(GfxSize) - Method in class com.hfg.svg.SvgGroup
-
- setFontSize(String) - Method in class com.hfg.svg.SvgSwitch
-
- setFontSize(GfxSize) - Method in class com.hfg.svg.SvgSwitch
-
- setFontSize(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setFontWeight(String) - Method in class com.hfg.svg.SvgGroup
-
- setFontWeight(String) - Method in class com.hfg.svg.SvgSwitch
-
- setFooter(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twips or twentieths of a point) from the bottom edge of the page to the bottom edge of the footer.
- setFooter(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setFooter(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setFooter(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setFor(String) - Method in class com.hfg.html.Label
-
- setForegroundColor(Color) - Method in class com.hfg.graphics.ColorSpec
-
Sets the foreground color; null values are allowed.
- setForegroundColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- setFormat(SsmlCellFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setFormat(SsmlDifferentialFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setFormatCode(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- setFormatString(String) - Method in class com.hfg.bio.seq.alignment.PctId
-
- setFormatString(String) - Method in class com.hfg.util.collection.DataColumn
-
Sets a formatting string (like "%.1f%%") to be used by the DataTable's
getFormatted().
- setFormula(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
The Formula attribute of a Cell element contains the formula associated with
the cell.
- setFormula(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setFrame(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
Whether or not to create a frame effect for the border.
- setFrameBorder(int) - Method in class com.hfg.html.Frame
-
- setFrameBorder(int) - Method in class com.hfg.html.Frameset
-
- setFrameBorder(boolean) - Method in class com.hfg.html.IFrame
-
- setFrameSpacing(int) - Method in class com.hfg.html.Frameset
-
- setFreqPer1000(Float) - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Specifies the frequency (per 1000 codons) that this codon was observed in the set of sequences.
- setFrom(T) - Method in class com.hfg.network.Edge
-
- setFrom(CellRef, GfxSize2D) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawOneCellAnchor
-
- setFrom(CellRef, GfxSize2D) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor
-
- setFTP_Path(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setGapPenalties(GapPenalties) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
Sets the specified gap penalties for both the query and subject.
- setGapPenalties(PairwiseSeqType, GapPenalties) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setGapPenalties(GapPenalties) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
Sets the specified gap penalties for both the query and subject.
- setGapPenalties(PairwiseSeqType, GapPenalties) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setGenBankCommonName(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setGenBankHiddenFlag(boolean) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setGenBankRefSeqPairedAssembly(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setGenes(Collection<Gene2D>) - Method in class com.hfg.graphics.Track
-
- setGenes(Collection<Gene2D>) - Method in class com.hfg.graphics.Track2D
-
- setGeneticCode(NCBIGeneticCode) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setGenomicLocaiton(GenomicLocation) - Method in class com.hfg.bio.seq.genomic.Intron
-
- setGenomicRepresentation(GenomicRepresentation) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setGradient(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- setGridSpan(Integer) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setGroupable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
Specifies whether the grid can be grouped by the column dataIndex.
- setGroupColumn(int, ExtGridCol) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setGroupContext(String) - Method in class com.hfg.ldap.LDAPClient
-
- setGroupContext(LdapName) - Method in class com.hfg.ldap.LDAPClient
-
- setGutter(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the page gutter (the extra space added to the margin, typically to account for binding).
- setHanging(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlIndentation
-
Specifies the indentation removed from the first line of this paragraph in absolute units.
- setHCount(Integer) - Method in class com.hfg.chem.Atom
-
- setHeader(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twips or twentieths of a point) from the top edge of the page to the top edge of the header.
- setHeader(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setHeader(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setHeader(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setHeight(GfxSize) - Method in class com.hfg.graphics.units.GfxSize2D
-
- setHeight(String) - Method in class com.hfg.html.Applet
-
- setHeight(int) - Method in class com.hfg.html.Applet
-
- setHeight(String) - Method in class com.hfg.html.IFrame
-
- setHeight(int) - Method in class com.hfg.html.IFrame
-
- setHeight(String) - Method in class com.hfg.html.Img
-
- setHeight(int) - Method in class com.hfg.html.Img
-
- setHeight(String) - Method in class com.hfg.html.ObjectTag
-
- setHeight(int) - Method in class com.hfg.html.ObjectTag
-
- setHeight(GfxSize) - Method in class com.hfg.math.HistogramSvgSettings
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setHeight(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setHeight(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setHeight(int) - Method in class com.hfg.svg.SVG
-
- setHeight(int) - Method in class com.hfg.svg.SvgFilter
-
- setHeight(String) - Method in class com.hfg.svg.SvgFilter
-
- setHeight(int) - Method in class com.hfg.svg.SvgForeignObject
-
- setHeight(GfxSize) - Method in class com.hfg.svg.SvgGenerationSettings
-
- setHeight(int) - Method in class com.hfg.svg.SvgMarker
-
- setHeight(String) - Method in class com.hfg.svg.SvgMarker
-
- setHeight(int) - Method in class com.hfg.svg.SvgRect
-
- setHeight(float) - Method in class com.hfg.svg.SvgRect
-
- setHeight(double) - Method in class com.hfg.svg.SvgRect
-
- setHeight(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelRow
-
- setHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlExtents
-
- setHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the height of the drawing.
- setHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- setHeight(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- setHeightInPixels(int) - Method in class com.hfg.graphics.Gene2D
-
- setHidden(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setHidden(boolean) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
Specifies whether the column should be hidden or not.
- setHidden(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- setHidden(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawingObjNonVisualProperties
-
- setHidden(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- setHidden(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
- setHiddenSubtreeRootFlag(boolean) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setHideable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setHideGrammaticalErrors(boolean) - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setHideMark(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
Ignore End Of Cell Marker In Row Height Calculation.
- setHideSpellingErrors(boolean) - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
- setHideWithCommentsForLegacyBrowsers(boolean) - Method in class com.hfg.xml.XMLCDATA
-
Sets whether or not to 'hide' the CDATA structure from browsers that are too
old to support it.
- setHighlight(WmlHighlightColor) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
Specifies a highlighting color to be applied as background behind the contents:
<w:highlight w:val="red"/> This element will supersede any background shading
specified in shd.
- setHighlightColor(Color) - Method in class com.hfg.graphics.Track
-
- setHighlightColor(Color) - Method in class com.hfg.graphics.Track2D
-
- setHoldability(int) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setHorizontal(Align) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- setHorizontal(SsmlHorizontalAlign) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- setHorizontalAlignment(ExcelHorizontalAlign) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setHost(String) - Method in class com.hfg.sql.jdbc.JDBCServer
-
Specifies the host machine where the database server is located.
- setHost(String) - Method in class com.hfg.util.io.ProxyConfig
-
- setHourSpec(String) - Method in class com.hfg.util.scheduler.CronSchedule
-
- setHref(String) - Method in class com.hfg.html.Area
-
- setHref(String) - Method in class com.hfg.svg.SvgScript
-
- setHRef(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
Specifies a URL to use to make the Cell a hyperlink.
- setHTMLOutput(Boolean) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Produce HTML output.
- setHttpEquiv(String) - Method in class com.hfg.html.Meta
-
- setHyperlink(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setId(int) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setId(String) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setId(String) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- setID(String) - Method in interface com.hfg.bio.seq.BioSequence
-
Sets the id or name for the sequence.
- setID(String) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setId(String) - Method in class com.hfg.bio.seq.Gene
-
- setID(String) - Method in class com.hfg.bio.seq.NucleicAcid
-
- setID(String) - Method in class com.hfg.bio.seq.Protein
-
Specifies the protein's name / identifier.
- setId(String) - Method in class com.hfg.graphics.Gene2D
-
- setId(String) - Method in class com.hfg.html.Applet
-
- setId(String) - Method in class com.hfg.html.Body
-
- setId(String) - Method in class com.hfg.html.Col
-
- setId(String) - Method in class com.hfg.html.Colgroup
-
- setId(String) - Method in class com.hfg.html.Div
-
- setId(String) - Method in class com.hfg.html.Form
-
- setId(String) - Method in class com.hfg.html.Frame
-
- setId(String) - Method in class com.hfg.html.Frameset
-
- setId(String) - Method in class com.hfg.html.H1
-
- setId(String) - Method in class com.hfg.html.H2
-
- setId(String) - Method in class com.hfg.html.H3
-
- setId(String) - Method in class com.hfg.html.Hr
-
- setId(String) - Method in class com.hfg.html.HTMLTag
-
- setId(String) - Method in class com.hfg.html.IFrame
-
- setId(String) - Method in class com.hfg.html.ImageMap
-
- setId(String) - Method in class com.hfg.html.Img
-
- setId(String) - Method in class com.hfg.html.InputButton
-
- setId(String) - Method in class com.hfg.html.InputCheckbox
-
- setId(String) - Method in class com.hfg.html.InputFile
-
- setId(String) - Method in class com.hfg.html.InputHidden
-
- setId(String) - Method in class com.hfg.html.InputPassword
-
- setId(String) - Method in class com.hfg.html.InputRadio
-
- setId(String) - Method in class com.hfg.html.InputReset
-
- setId(String) - Method in class com.hfg.html.InputSubmit
-
- setId(String) - Method in class com.hfg.html.InputText
-
- setId(String) - Method in class com.hfg.html.Label
-
- setId(String) - Method in class com.hfg.html.Li
-
- setId(String) - Method in class com.hfg.html.Link
-
- setId(String) - Method in class com.hfg.html.Ol
-
- setId(String) - Method in class com.hfg.html.OptGroup
-
- setId(String) - Method in class com.hfg.html.Option
-
- setId(String) - Method in class com.hfg.html.P
-
- setId(String) - Method in class com.hfg.html.Pre
-
- setId(String) - Method in class com.hfg.html.Select
-
- setId(String) - Method in class com.hfg.html.Span
-
- setId(String) - Method in class com.hfg.html.Table
-
- setId(String) - Method in class com.hfg.html.TBody
-
- setId(String) - Method in class com.hfg.html.Td
-
- setId(String) - Method in class com.hfg.html.Textarea
-
- setId(String) - Method in class com.hfg.html.TFoot
-
- setId(String) - Method in class com.hfg.html.Th
-
- setId(String) - Method in class com.hfg.html.THead
-
- setId(String) - Method in class com.hfg.html.Tr
-
- setId(String) - Method in class com.hfg.html.Ul
-
- setId(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setId(String) - Method in class com.hfg.svg.SvgCircle
-
- setId(String) - Method in class com.hfg.svg.SvgEllipse
-
- setId(String) - Method in class com.hfg.svg.SvgFilter
-
- setId(String) - Method in class com.hfg.svg.SvgGroup
-
- setId(String) - Method in class com.hfg.svg.SvgMarker
-
- setId(String) - Method in class com.hfg.svg.SvgMetadata
-
- setId(String) - Method in class com.hfg.svg.SvgSwitch
-
- setId(String) - Method in class com.hfg.svg.SvgSymbol
-
- setId(String) - Method in class com.hfg.svg.SvgText
-
- setId(String) - Method in class com.hfg.svg.SvgTSpan
-
- setId(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- setId(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setId(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawingObjNonVisualProperties
-
- setId(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlHyperlink
-
- setId(String) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- setId(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- setId(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- setIf(String) - Method in class com.hfg.anttask.FileProperty
-
Only execute if a property of the given name exists in the current project
- setIf(String) - Method in class com.hfg.anttask.GetWild
-
Only execute if a property of the given name exists in the current project.
- setIgnoreErrors(boolean) - Method in class com.hfg.anttask.GetWild
-
Specifies whether or not to ignore retrieval errors.
- setIgnoreGaps(boolean) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- setIgnoreGaps(boolean) - Method in class com.hfg.bio.seq.pattern.ProteinPattern
-
- setIgnoreGaps(boolean) - Method in class com.hfg.bio.seq.pattern.ProteinPatternMatcher
-
- setIgnoreGaps(boolean) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- setImageUrl(String) - Method in interface com.hfg.util.User
-
- setImageUrl(String) - Method in class com.hfg.util.UserImpl
-
- setImageWidth(int) - Method in class com.hfg.graphics.Track
-
- setImageWidth(int) - Method in class com.hfg.graphics.Track2D
-
- setImplicitHCount(Integer) - Method in class com.hfg.chem.Atom
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setIn(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setIn2(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setIn2(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setIn2(FeInput) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
The second input image, which is used to displace the pixels in the image from attribute in.
- setIndentSize(int) - Method in class com.hfg.xml.parser.XMLRepeatContentHandler
-
- setIndentSize(int) - Method in class com.hfg.xml.XMLEmitter
-
Sets the number of spaces each tag level is indented
- setIndex(Integer) - Method in class com.hfg.util.collection.DataColumn
-
- setIndex(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setIndex(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
If index values are not specified, the columns are assumed to be consecutive.
- setIndex(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelRow
-
- setIndex(int) - Method in class com.hfg.xml.msofficexml.docx.drawingml.effect.DmlEffectRef
-
- setIndex(int) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlFillRef
-
- setIndex(DmlFontCollectionIndex) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontRef
-
- setIndex(int) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineRef
-
- setIndex(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
Only for use by the StylesPart when setting a new value for the default font.
- setIndex(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
Only for use by the StylesPart when setting a new value for the default font.
- setIndex(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
Only for use by the StylesPart when setting a new value for the default font.
- setInfraspecificName(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setInheritedDivisionFlag(boolean) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setInheritedGeneticCodeFlag(boolean) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setInheritedMitochondrialGeneticCodeFlag(boolean) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setInitialValue(T) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setInputFile(File) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setInstitution(String) - Method in class com.hfg.citation.Citation
-
- setInstruction(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlSimpleField
-
- setInt(PreparedStatement, int, Integer) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setInt().
- setIntercept(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setIntercept(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setIntercept(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setIntercept(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setInventors(List<Author>) - Method in class com.hfg.citation.PatentData
-
- setIsActiveDirectory(Boolean) - Method in class com.hfg.ldap.LDAP_Config
-
- setIsAltInitiation(boolean) - Method in class com.hfg.bio.seq.translation.Codon
-
- setIsAromatic(boolean) - Method in class com.hfg.chem.Atom
-
- setIsAromatic() - Method in class com.hfg.chem.CovalentBond
-
- setISBN(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setISBN(String) - Method in class com.hfg.citation.Citation
-
Specifies the international standard book number (ISBN) for the citation.
- setIsCaseSensitive(boolean) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- setIsConsumable(boolean) - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- setIsConsumed() - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- setIsDefault(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setIsDefault(boolean) - Method in class com.hfg.xml.XMLNamespace
-
- setIsDirty(boolean) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setIsDown() - Method in class com.hfg.chem.CovalentBond
-
- setIsId(boolean) - Method in class com.hfg.sql.table.DatabaseCol
-
- setIsImportant(boolean) - Method in class com.hfg.css.CSSDeclaration
-
- setIsInitiation(boolean) - Method in class com.hfg.bio.seq.translation.Codon
-
- setIsMajorTopic(boolean) - Method in class com.hfg.citation.ncbi.MeshHeading
-
- setIsMajorTopic(boolean) - Method in class com.hfg.citation.ncbi.MeshQualifier
-
- setIsMultiple(boolean) - Method in class com.hfg.html.Select
-
- setIsolate(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setIsPalindromic(boolean) - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- setIsRelative(boolean) - Method in class com.hfg.svg.path.SvgPathCmd
-
- setIsRelative(boolean) - Method in class com.hfg.svg.path.SvgPathEllipticalArcCmd
-
- setIsRelative(boolean) - Method in class com.hfg.svg.path.SvgPathMoveToCmd
-
- setIsRequired(boolean) - Method in class com.hfg.util.collection.DataColumn
-
- setISSN(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setISSN(String) - Method in class com.hfg.citation.Citation
-
Specifies the international standard serial number (ISSN) for the citation.
- setISSN(String) - Method in class com.hfg.citation.Journal
-
- setIsStandalone(boolean) - Method in class com.hfg.xml.XMLBasedDoc
-
- setIsStandalone(boolean) - Method in class com.hfg.xml.XMLDoc
-
- setIssue(Integer) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setIssue(String) - Method in class com.hfg.citation.Citation
-
- setIsTextBox() - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualShapeProperties
-
- setIsUp() - Method in class com.hfg.chem.CovalentBond
-
- setItalic() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFont
-
- setItalic(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setItalic(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setItalics() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setItemId(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setJournal(String) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setJournal(Journal) - Method in class com.hfg.citation.Citation
-
- setJpgQuality(int) - Method in class com.hfg.image.ImageMagick
-
- setJustification(WmlJustification) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setJustification(WmlJustification) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- setJustification(WmlJustification) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
- setK1(float) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setK2(float) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setK3(float) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setK4(float) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setKaSet(KaSet) - Method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- setKeepLines() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Specifies that this paragraph's lines should be kept on one page.
- setKeepNext() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Specifies that this paragraph should not be separated by a page break from the one that follows it.
- setKernelMatrix(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setKernelUnitLength(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setKernelUnitLength(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
Sets the first number as the <dx> value and the optionsl second number as
the <dygt; value.
- setKey(K) - Method in class com.hfg.util.collection.SymmetricMatrix.MatrixRow
-
- setKeywords(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setKMerSize(int) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setLabel(String) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setLabel(String) - Method in class com.hfg.graphics.DataStylist
-
- setLabel(String) - Method in class com.hfg.graphics.DataStylistGenerator
-
- setLabel(String) - Method in class com.hfg.html.OptGroup
-
- setLabelColor(Color) - Method in class com.hfg.graphics.Track
-
- setLabelColor(Color) - Method in class com.hfg.graphics.Track2D
-
- setLabelFont(Font) - Method in class com.hfg.graphics.Gene2D
-
- setLabelFont(Font) - Method in class com.hfg.graphics.Track
-
- setLabelFont(Font) - Method in class com.hfg.graphics.Track2D
-
- setLanguage(String) - Method in class com.hfg.citation.Citation
-
- setLanguage(String) - Method in class com.hfg.html.Script
-
- setLastModifiedBy(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setLastName(String) - Method in class com.hfg.citation.Author
-
- setLatinFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMajorFont
-
- setLatinFont(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlMinorFont
-
- setLeafLabelLeftPadding(GfxSize) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setLeft(GfxSize) - Method in class com.hfg.graphics.PageMargins
-
- setLeft(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlIndentation
-
Specifies the left indentation for this paragraph in absolute units.
- setLeft(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlEffectExtent
-
Specifies the additional extent to add to the left of the drawing.
- setLeft(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twips or twentieths of a point) from the left edge of the page to the left edge of the text.
- setLeft(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setLength(int) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- setLength(int) - Method in class com.hfg.util.StringBuilderPlus
-
- setLength(int) - Method in class com.hfg.xml.parser.XMLStringBuffer
-
- setLenient(boolean) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- setLenientHTMLEmptyTags(Collection<String>) - Method in class com.hfg.xml.parser.SaxyParser
-
- setLenientHTMLParsing(boolean) - Method in class com.hfg.xml.parser.SaxyParser
-
- setLevel(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlListProperties
-
Specifies the list level of the items to follow.
- setLevel(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setLevel(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingProperties
-
- setLevelText(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setLexicalHandler(LexicalHandler) - Method in class com.hfg.xml.parser.SaxyParser
-
- setLight1(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setLight2(DmlColor) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setLightingColor(Color) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setLightingColor(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setLightSource(SvgLightSource) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
Sets the light source - an instance of SvgFeDistantLight, SvgFePointLight, or SvgFeSpotLight.
- setLimit(int) - Method in class com.hfg.sql.SQLQuery
-
- setLimit(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.join.DmlMiterLineJoin
-
- setLimitingConeAngle(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
A limiting cone which restricts the region where the light is projected.
- setLine(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlSpacing
-
This attribute specifies the amount of vertical spacing between lines of text within this paragraph.
- setLineDashType(DmlPresetLineDashType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.dash.DmlPresetLineDash
-
- setLineHeight(float) - Method in class com.hfg.svg.SvgTSpan
-
- setLineIndex(int) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setLineJoin(DmlLineJoin) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the line join that should be used for the shape.
- setLineLength(Integer) - Method in class com.hfg.bio.seq.format.FASTA
-
- setLineSeparator(String) - Method in class com.hfg.util.StringBuilderPlus
-
- setLineStyle(ExcelLineStyle) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorder
-
- setLink(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setLink(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setLink(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setLocation(GenomicLocation) - Method in class com.hfg.bio.seq.Gene
-
- setLocation(String) - Method in class com.hfg.util.UserImpl
-
- setLock(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlComplexField
-
- setLockable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setLocked(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setLoginTimeout(int) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setLogWriter(PrintWriter) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setLong(PreparedStatement, int, Long) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setLong().
- setMappedLength(Integer) - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Sets the summed length of the query sequence that was successfully mapped.
- setMapping(char, AminoAcid) - Method in class com.hfg.bio.AminoAcidSet
-
- setMappings(AminoAcidSet) - Method in class com.hfg.bio.AminoAcidSet
-
- setMarginBottom(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the top margin for the drawing.
- setMarginLeft(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the left margin for the drawing.
- setMarginRight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the right margin for the drawing.
- setMargins(PageMargins) - Method in class com.hfg.graphics.PageSetup
-
- setMarginTop(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the top margin for the drawing.
- setMarkerUnits(MarkerCoordinateSystem) - Method in class com.hfg.svg.SvgMarker
-
- setMatchMultiple(boolean) - Method in class com.hfg.anttask.GetWild
-
Specifies whether or not to retrieve multiple matching files.
- setMathContext(MathContext) - Method in class com.hfg.units.BaseSIUnitConverter
-
- setMathContext(MathContext) - Method in class com.hfg.units.Unit
-
Sets the MathContext to specify precision and rounding during operations with this Unit.
- setMax(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
Sets the 1-based index of the last column that this spec applies to.
- setMaxColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- setMaxConnections(Integer) - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
- setMaxExceptionsPerRecord(int) - Method in class com.hfg.bio.seq.format.FASTA
-
Specify the maximum number of Exceptions to tolerate per record.
- setMaxExceptionsPerRecord(int) - Method in class com.hfg.bio.seq.format.GenBank
-
Specify the maximum number of Exceptions to tolerate per record.
- setMaxFieldSize(Integer) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setMaxFragmentLength(Integer) - Method in class com.hfg.bio.DigestSettings
-
- setMaxFragmentMass(Float) - Method in class com.hfg.bio.DigestSettings
-
- setMaxIdentifierLength(int) - Method in class com.hfg.sql.jdbc.RDBMS
-
- setMaxIdleTimeSec(Integer) - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
Specifies the maximum amount of time that a connection above the minimum number
of pool connections can sit idle before potentially being closed.
- setMaxInClauseArgs(int) - Method in class com.hfg.sql.jdbc.postgresql.PostgreSQL
-
Since PostgreSQL doesn't have a hard limit for the number of in-clause
arguments, the user is allowed to set a desired limit.
- setMaxInClauseArgs(int) - Method in class com.hfg.sql.jdbc.RDBMS
-
- setMaxLength(int) - Method in class com.hfg.html.InputPassword
-
- setMaxLength(int) - Method in class com.hfg.html.InputText
-
- setMaxLength(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
Specifies the maximum length of the data bar, as a percentage of the cell's width.
- setMaxLocalAlignmentResults(Integer) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setMaxMismatches(int) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- setMaxMismatches(int) - Method in class com.hfg.bio.seq.pattern.ProteinPattern
-
- setMaxMismatches(int) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- setMaxMismatches(int) - Method in class com.hfg.util.BYPStringPattern
-
- setMaxMissedCleavages(int) - Method in class com.hfg.bio.DigestSettings
-
- setMaxOccurs(int) - Method in class com.hfg.xml.xsd.XsdChoice
-
- setMaxOccurs(int) - Method in class com.hfg.xml.xsd.XsdContent
-
- setMaxOccurs(int) - Method in class com.hfg.xml.xsd.XsdElement
-
- setMaxOccurs(int) - Method in class com.hfg.xml.xsd.XsdGroup
-
- setMaxOccurs(int) - Method in class com.hfg.xml.xsd.XsdSequence
-
- setMaxRows(Integer) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setMaxValue(Float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- setMaxWidth(Integer) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setMaxWidth(int) - Method in class com.hfg.javascript.TooltipJS
-
Sets the suggested maximum width for tooltips.
- setMayScript(boolean) - Method in class com.hfg.html.Applet
-
- setMean(Double) - Method in class com.hfg.math.StandardNormalDistribution
-
- setMeasurementSystem(MeasurementSystem) - Method in class com.hfg.units.TimeUnit
-
- setMeasurementSystem(MeasurementSystem) - Method in class com.hfg.units.Unit
-
- setMediaQueries(Collection<CSSMediaQuery>) - Method in class com.hfg.css.CSSRule
-
- setMediaType(MediaType) - Method in class com.hfg.citation.Citation
-
Specify the media type for the citation source material.
- setMediaType(CSSMediaType) - Method in class com.hfg.css.CSSMediaQuery
-
- setMediaType(CSSMediaType) - Method in class com.hfg.css.CSSRule
-
- setMenuTitle(String) - Method in class com.hfg.javascript.PopupMenuJS
-
- setMergeAcross(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
Specifies the number of horizontally adjacent cells to merge with this cell.
- setMergeDown(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
Specifies the number of vertically adjacent cells to merge with this cell.
- setMetaDataForDisplay(DataTable) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setMethod(String) - Method in class com.hfg.html.Form
-
- setMethod(Method) - Method in class com.hfg.util.StackTraceElementFilter
-
- setMiddleName(String) - Method in class com.hfg.citation.Author
-
- setMimeType(MimeType) - Method in class com.hfg.xml.Doctype
-
- setMin(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
Sets the 1-based index of the first column that this spec applies to.
- setMinColor(Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- setMinConnections(Integer) - Method in class com.hfg.sql.jdbc.JDBCConnectionPoolSettings
-
- setMinFragmentLength(Integer) - Method in class com.hfg.bio.DigestSettings
-
- setMinFragmentMass(Float) - Method in class com.hfg.bio.DigestSettings
-
- setMinLength(int) - Method in class com.hfg.bio.seq.NucleicAcidTrimmer
-
- setMinLength(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
Specifies the minimum length of the data bar, as a percentage of the cell's width.
- setMinLocalAlignmentLength(Integer) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setMinNumOfBackgroundCycles(int) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setMinOccurs(int) - Method in class com.hfg.xml.xsd.XsdChoice
-
- setMinOccurs(int) - Method in class com.hfg.xml.xsd.XsdContent
-
- setMinOccurs(int) - Method in class com.hfg.xml.xsd.XsdElement
-
- setMinOccurs(int) - Method in class com.hfg.xml.xsd.XsdGroup
-
- setMinOccurs(int) - Method in class com.hfg.xml.xsd.XsdSequence
-
- setMinQueryMatchLength(Integer) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
Specifies the minimum number of non-gap characters for the query in the alignment.
- setMinRawScore(Integer) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setMinuteSpec(String) - Method in class com.hfg.util.scheduler.CronSchedule
-
- setMinValue(Float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- setMinWidth(Integer) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setMitochondrialGeneticCode(NCBIGeneticCode) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setMode(ImageBlendingMode) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setMolType(MolType) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setMolType(MolType) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setMonoisotopicMass(Double) - Method in class com.hfg.chem.Molecule
-
If the elemental composition is known, use setElementalComposition() and
the masses will be derived automatically; this method is for use in those
(hopefully) rare times when the mass is known but not the elemental composition.
- setMonthSpec(String) - Method in class com.hfg.util.scheduler.CronSchedule
-
- setMouseMove(boolean) - Method in class com.hfg.javascript.TooltipJS
-
Move the tooltip via onmousemove().
- setMultiLevelType(WmlNumberingDefinitionType) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlAbstractNumbering
-
- setMultiple(boolean) - Method in class com.hfg.html.InputFile
-
- setMuscleVersion(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- setName(String) - Method in class com.hfg.anttask.FileProperty
-
- setName(String) - Method in class com.hfg.anttask.GetWild
-
Set the task's name.
- setName(String) - Method in class com.hfg.bio.AAGroup
-
- setName(String) - Method in class com.hfg.bio.AminoAcidSet
-
- setName(String) - Method in class com.hfg.bio.KaSet
-
- setName(String) - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- setName(String) - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- setName(String) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- setName(String) - Method in class com.hfg.chem.Molecule
-
- setName(String) - Method in class com.hfg.graphics.Track
-
- setName(String) - Method in class com.hfg.graphics.Track2D
-
- setName(String) - Method in class com.hfg.html.Applet
-
- setName(String) - Method in class com.hfg.html.Form
-
- setName(String) - Method in class com.hfg.html.Frame
-
- setName(String) - Method in class com.hfg.html.IFrame
-
- setName(String) - Method in class com.hfg.html.ImageMap
-
- setName(String) - Method in class com.hfg.html.Img
-
- setName(String) - Method in class com.hfg.html.InputButton
-
- setName(String) - Method in class com.hfg.html.InputCheckbox
-
- setName(String) - Method in class com.hfg.html.InputFile
-
- setName(String) - Method in class com.hfg.html.InputHidden
-
- setName(String) - Method in class com.hfg.html.InputPassword
-
- setName(String) - Method in class com.hfg.html.InputRadio
-
- setName(String) - Method in class com.hfg.html.InputSubmit
-
- setName(String) - Method in class com.hfg.html.InputText
-
- setName(String) - Method in class com.hfg.html.Link
-
- setName(String) - Method in class com.hfg.html.Meta
-
- setName(String) - Method in class com.hfg.html.Param
-
- setName(String) - Method in class com.hfg.html.Select
-
- setName(String) - Method in class com.hfg.html.Textarea
-
- setName(String) - Method in class com.hfg.javascript.ext.ExtGridColList
-
- setName(String) - Method in class com.hfg.setting.Settings
-
- setName(String) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setName(String) - Method in class com.hfg.sql.jdbc.JDBCServer
-
- setName(String) - Method in class com.hfg.sql.table.DatabaseTable
-
- setName(String) - Method in class com.hfg.svg.SvgDoc
-
- setName(String) - Method in class com.hfg.util.mime.MimeContentDisposition
-
- setName(String) - Method in class com.hfg.util.scheduler.ScheduledJob
-
- setName(String) - Method in interface com.hfg.util.User
-
- setName(String) - Method in class com.hfg.util.UserImpl
-
- setName(String) - Method in class com.hfg.xml.Doctype
-
- setName(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontScheme
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlColorScheme
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.theme.DmlTheme
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setName(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawingObjNonVisualProperties
-
- setName(String) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlDocument
-
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
A shortcut for setting the name of a shape.
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- setName(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setName(String) - Method in class com.hfg.xml.XMLAttribute
-
Sets the attribute's local name
- setName(String) - Method in class com.hfg.xml.XMLBasedDoc
-
- setName(String) - Method in class com.hfg.xml.XMLDoc
-
- setName(String) - Method in class com.hfg.xml.xsd.XsdElement
-
- setNamedItem(Node) - Method in class com.hfg.xml.XMLAttributeMap
-
- setNamedItemNS(Node) - Method in class com.hfg.xml.XMLAttributeMap
-
- setNameOfBaseType(String) - Method in class com.hfg.xml.xsd.XsdComplexType
-
- setNamespace(XMLNamespace) - Method in class com.hfg.xml.XMLAttribute
-
- setNamespace(XMLNamespace) - Method in class com.hfg.xml.XMLName
-
- setNamespace(XMLNamespace) - Method in interface com.hfg.xml.XMLNode
-
- setNamespace(XMLNamespace) - Method in class com.hfg.xml.XMLTag
-
- setNamespace(XMLNamespace) - Method in class com.hfg.xml.xsd.XsdElement
-
- setNamespace(XMLNamespace) - Method in class com.hfg.xml.xsd.XsdType
-
- setNCBITaxon(NCBITaxon) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setNCBITaxon(NCBITaxon) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setNCBITaxon(NCBITaxon) - Method in class com.hfg.bio.seq.NucleicAcid
-
- setNCBITaxon(NCBITaxon) - Method in class com.hfg.bio.seq.Protein
-
- setNetworkTimeout(Executor, int) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setNext(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
Sets the style that should be used for the paragraph that follows this one.
- setNodeValue(String) - Method in class com.hfg.xml.XMLAttribute
-
- setNormalViewZoomScale(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the zoom magnification when in normal view, representing percent values.
- setNote(String) - Method in class com.hfg.citation.Citation
-
Specify additional citation details, commentary, or summary.
- setNTerminalGroup(NTerminalGroup) - Method in class com.hfg.bio.AminoAcidSet
-
- setNTerminalpKa(NTerminalGroup, float, Charge) - Method in class com.hfg.bio.KaSet
-
- setNTerminalpKa(AminoAcid, float, Charge) - Method in class com.hfg.bio.KaSet
-
- setNumAlignments(Integer) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Show alignments for this number of database sequences.
- setNumber(Integer) - Method in class com.hfg.bio.seq.translation.CodonUsage
-
Specifies the number of times this codon was observed in the set of sequences.
- setNumberFormat(NumberFormat) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- setNumberFormat(ExcelNumberFormat) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setNumberFormat(SsmlNumberFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setNumberFormat(SsmlNumberFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- setNumberFormat(SsmlNumberFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- setNumberingFormat(WmlNumberingFormat) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setNumberingId(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlList
-
- setNumberingId(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingProperties
-
- setNumDescriptions(Integer) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Show one-line descriptions for this number of database sequences.
- setNumDisulfideBonds(int) - Method in class com.hfg.bio.seq.Protein
-
- setNumGaps(Integer) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setNumIdentities(Integer) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setNumMismatches(int) - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- setNumMismatches(int) - Method in class com.hfg.util.BYPStringMatch
-
- setNumOctaves(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setNumSigFigsForCoordinates(int) - Static method in class com.hfg.svg.SVG
-
- setNumSteps(int) - Method in class com.hfg.svg.path.SvgPathCmd
-
- setNumThreads(Integer) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Number of threads (CPUs) to use in the BLAST search.
- setNumUncleavedSites(int) - Method in class com.hfg.bio.DigestFragment
-
- setObjectValue(V) - Method in class com.hfg.setting.SettingImpl
-
- setOffset(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setOffset(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setOffset(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setOffset(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setOffset(Double) - Method in class com.hfg.units.BaseSIUnitConverter
-
- setOffsetX(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setOffsetY(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setOnBlur(String) - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- setOnBlur(String) - Method in class com.hfg.html.InputButton
-
- setOnBlur(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnBlur(String) - Method in class com.hfg.html.InputFile
-
- setOnBlur(String) - Method in class com.hfg.html.InputPassword
-
- setOnBlur(String) - Method in class com.hfg.html.InputRadio
-
- setOnBlur(String) - Method in class com.hfg.html.InputReset
-
- setOnBlur(String) - Method in class com.hfg.html.InputText
-
- setOnBlur(String) - Method in class com.hfg.html.Select
-
- setOnBlur(String) - Method in class com.hfg.html.Textarea
-
- setOnChange(String) - Method in class com.hfg.html.custom.CheckboxSpan
-
- setOnChange(String) - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- setOnChange(String) - Method in class com.hfg.html.InputButton
-
- setOnChange(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnChange(String) - Method in class com.hfg.html.InputFile
-
- setOnChange(String) - Method in class com.hfg.html.InputPassword
-
- setOnChange(String) - Method in class com.hfg.html.InputRadio
-
- setOnChange(String) - Method in class com.hfg.html.InputText
-
- setOnChange(String) - Method in class com.hfg.html.Select
-
- setOnChange(String) - Method in class com.hfg.html.Textarea
-
- setOnClick(String) - Method in class com.hfg.html.Area
-
- setOnClick(String) - Method in class com.hfg.html.Body
-
- setOnClick(String) - Method in class com.hfg.html.Center
-
- setOnClick(String) - Method in class com.hfg.html.Div
-
- setOnClick(String) - Method in class com.hfg.html.H1
-
- setOnClick(String) - Method in class com.hfg.html.H2
-
- setOnClick(String) - Method in class com.hfg.html.H3
-
- setOnClick(String) - Method in class com.hfg.html.Hr
-
- setOnClick(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnClick(String) - Method in class com.hfg.html.ImageMap
-
- setOnClick(String) - Method in class com.hfg.html.Img
-
- setOnClick(String) - Method in class com.hfg.html.InputButton
-
- setOnClick(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnClick(String) - Method in class com.hfg.html.InputFile
-
- setOnClick(String) - Method in class com.hfg.html.InputPassword
-
- setOnClick(String) - Method in class com.hfg.html.InputRadio
-
- setOnClick(String) - Method in class com.hfg.html.InputReset
-
- setOnClick(String) - Method in class com.hfg.html.InputSubmit
-
- setOnClick(String) - Method in class com.hfg.html.InputText
-
- setOnClick(String) - Method in class com.hfg.html.Label
-
- setOnClick(String) - Method in class com.hfg.html.Li
-
- setOnClick(String) - Method in class com.hfg.html.Link
-
- setOnClick(String) - Method in class com.hfg.html.Option
-
- setOnClick(String) - Method in class com.hfg.html.P
-
- setOnClick(String) - Method in class com.hfg.html.Pre
-
- setOnClick(String) - Method in class com.hfg.html.Select
-
- setOnClick(String) - Method in class com.hfg.html.Span
-
- setOnClick(String) - Method in class com.hfg.html.Table
-
- setOnClick(String) - Method in class com.hfg.html.TBody
-
- setOnClick(String) - Method in class com.hfg.html.Td
-
- setOnClick(String) - Method in class com.hfg.html.Textarea
-
- setOnClick(String) - Method in class com.hfg.html.TFoot
-
- setOnClick(String) - Method in class com.hfg.html.Th
-
- setOnClick(String) - Method in class com.hfg.html.THead
-
- setOnClick(String) - Method in class com.hfg.html.Tr
-
- setOnClick(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setOnClick(String) - Method in class com.hfg.svg.SvgGroup
-
- setOnDblClick(String) - Method in class com.hfg.html.Area
-
- setOnDblClick(String) - Method in class com.hfg.html.Body
-
- setOnDblClick(String) - Method in class com.hfg.html.Center
-
- setOnDblClick(String) - Method in class com.hfg.html.Div
-
- setOnDblClick(String) - Method in class com.hfg.html.Hr
-
- setOnDblClick(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnDblClick(String) - Method in class com.hfg.html.ImageMap
-
- setOnDblClick(String) - Method in class com.hfg.html.Img
-
- setOnDblClick(String) - Method in class com.hfg.html.InputButton
-
- setOnDblClick(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnDblClick(String) - Method in class com.hfg.html.InputFile
-
- setOnDblClick(String) - Method in class com.hfg.html.InputPassword
-
- setOnDblClick(String) - Method in class com.hfg.html.InputRadio
-
- setOnDblClick(String) - Method in class com.hfg.html.InputReset
-
- setOnDblClick(String) - Method in class com.hfg.html.InputSubmit
-
- setOnDblClick(String) - Method in class com.hfg.html.InputText
-
- setOnDblClick(String) - Method in class com.hfg.html.Label
-
- setOnDblClick(String) - Method in class com.hfg.html.Li
-
- setOnDblClick(String) - Method in class com.hfg.html.Link
-
- setOnDblClick(String) - Method in class com.hfg.html.Option
-
- setOnDblClick(String) - Method in class com.hfg.html.P
-
- setOnDblClick(String) - Method in class com.hfg.html.Pre
-
- setOnDblClick(String) - Method in class com.hfg.html.Select
-
- setOnDblClick(String) - Method in class com.hfg.html.Span
-
- setOnDblClick(String) - Method in class com.hfg.html.Table
-
- setOnDblClick(String) - Method in class com.hfg.html.Td
-
- setOnDblClick(String) - Method in class com.hfg.html.Textarea
-
- setOnDblClick(String) - Method in class com.hfg.html.Th
-
- setOnDblClick(String) - Method in class com.hfg.html.Tr
-
- setOneLetterCode(Character) - Method in class com.hfg.bio.AminoAcid
-
- setOnFocus(String) - Method in class com.hfg.html.HTMLTagWithFormEvents
-
- setOnFocus(String) - Method in class com.hfg.html.InputButton
-
- setOnFocus(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnFocus(String) - Method in class com.hfg.html.InputFile
-
- setOnFocus(String) - Method in class com.hfg.html.InputPassword
-
- setOnFocus(String) - Method in class com.hfg.html.InputRadio
-
- setOnFocus(String) - Method in class com.hfg.html.InputText
-
- setOnFocus(String) - Method in class com.hfg.html.Select
-
- setOnFocus(String) - Method in class com.hfg.html.Textarea
-
- setOnKeyDown(String) - Method in class com.hfg.html.Area
-
- setOnKeyDown(String) - Method in class com.hfg.html.Body
-
- setOnKeyDown(String) - Method in class com.hfg.html.Center
-
- setOnKeyDown(String) - Method in class com.hfg.html.Div
-
- setOnKeyDown(String) - Method in class com.hfg.html.Hr
-
- setOnKeyDown(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnKeyDown(String) - Method in class com.hfg.html.ImageMap
-
- setOnKeyDown(String) - Method in class com.hfg.html.Img
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputButton
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputFile
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputPassword
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputRadio
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputReset
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputSubmit
-
- setOnKeyDown(String) - Method in class com.hfg.html.InputText
-
- setOnKeyDown(String) - Method in class com.hfg.html.Label
-
- setOnKeyDown(String) - Method in class com.hfg.html.Li
-
- setOnKeyDown(String) - Method in class com.hfg.html.Link
-
- setOnKeyDown(String) - Method in class com.hfg.html.Option
-
- setOnKeyDown(String) - Method in class com.hfg.html.P
-
- setOnKeyDown(String) - Method in class com.hfg.html.Pre
-
- setOnKeyDown(String) - Method in class com.hfg.html.Select
-
- setOnKeyDown(String) - Method in class com.hfg.html.Span
-
- setOnKeyDown(String) - Method in class com.hfg.html.Table
-
- setOnKeyDown(String) - Method in class com.hfg.html.Td
-
- setOnKeyDown(String) - Method in class com.hfg.html.Textarea
-
- setOnKeyDown(String) - Method in class com.hfg.html.Th
-
- setOnKeyDown(String) - Method in class com.hfg.html.Tr
-
- setOnKeyPress(String) - Method in class com.hfg.html.Area
-
- setOnKeyPress(String) - Method in class com.hfg.html.Body
-
- setOnKeyPress(String) - Method in class com.hfg.html.Center
-
- setOnKeyPress(String) - Method in class com.hfg.html.Div
-
- setOnKeyPress(String) - Method in class com.hfg.html.Hr
-
- setOnKeyPress(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnKeyPress(String) - Method in class com.hfg.html.ImageMap
-
- setOnKeyPress(String) - Method in class com.hfg.html.Img
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputButton
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputFile
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputPassword
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputRadio
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputReset
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputSubmit
-
- setOnKeyPress(String) - Method in class com.hfg.html.InputText
-
- setOnKeyPress(String) - Method in class com.hfg.html.Label
-
- setOnKeyPress(String) - Method in class com.hfg.html.Li
-
- setOnKeyPress(String) - Method in class com.hfg.html.Link
-
- setOnKeyPress(String) - Method in class com.hfg.html.Option
-
- setOnKeyPress(String) - Method in class com.hfg.html.P
-
- setOnKeyPress(String) - Method in class com.hfg.html.Pre
-
- setOnKeyPress(String) - Method in class com.hfg.html.Select
-
- setOnKeyPress(String) - Method in class com.hfg.html.Span
-
- setOnKeyPress(String) - Method in class com.hfg.html.Table
-
- setOnKeyPress(String) - Method in class com.hfg.html.Td
-
- setOnKeyPress(String) - Method in class com.hfg.html.Textarea
-
- setOnKeyPress(String) - Method in class com.hfg.html.Th
-
- setOnKeyPress(String) - Method in class com.hfg.html.Tr
-
- setOnKeyUp(String) - Method in class com.hfg.html.Area
-
- setOnKeyUp(String) - Method in class com.hfg.html.Body
-
- setOnKeyUp(String) - Method in class com.hfg.html.Center
-
- setOnKeyUp(String) - Method in class com.hfg.html.Div
-
- setOnKeyUp(String) - Method in class com.hfg.html.Hr
-
- setOnKeyUp(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnKeyUp(String) - Method in class com.hfg.html.ImageMap
-
- setOnKeyUp(String) - Method in class com.hfg.html.Img
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputButton
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputFile
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputPassword
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputRadio
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputReset
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputSubmit
-
- setOnKeyUp(String) - Method in class com.hfg.html.InputText
-
- setOnKeyUp(String) - Method in class com.hfg.html.Label
-
- setOnKeyUp(String) - Method in class com.hfg.html.Li
-
- setOnKeyUp(String) - Method in class com.hfg.html.Link
-
- setOnKeyUp(String) - Method in class com.hfg.html.Option
-
- setOnKeyUp(String) - Method in class com.hfg.html.P
-
- setOnKeyUp(String) - Method in class com.hfg.html.Pre
-
- setOnKeyUp(String) - Method in class com.hfg.html.Select
-
- setOnKeyUp(String) - Method in class com.hfg.html.Span
-
- setOnKeyUp(String) - Method in class com.hfg.html.Table
-
- setOnKeyUp(String) - Method in class com.hfg.html.Td
-
- setOnKeyUp(String) - Method in class com.hfg.html.Textarea
-
- setOnKeyUp(String) - Method in class com.hfg.html.Th
-
- setOnKeyUp(String) - Method in class com.hfg.html.Tr
-
- setOnLoad(String) - Method in class com.hfg.html.Body
-
Sets the onload attribute to the specified value.
- setOnMouseDown(String) - Method in class com.hfg.html.Area
-
- setOnMouseDown(String) - Method in class com.hfg.html.Body
-
- setOnMouseDown(String) - Method in class com.hfg.html.Center
-
- setOnMouseDown(String) - Method in class com.hfg.html.Div
-
- setOnMouseDown(String) - Method in class com.hfg.html.Hr
-
- setOnMouseDown(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnMouseDown(String) - Method in class com.hfg.html.ImageMap
-
- setOnMouseDown(String) - Method in class com.hfg.html.Img
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputButton
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputFile
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputPassword
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputRadio
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputReset
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputSubmit
-
- setOnMouseDown(String) - Method in class com.hfg.html.InputText
-
- setOnMouseDown(String) - Method in class com.hfg.html.Label
-
- setOnMouseDown(String) - Method in class com.hfg.html.Li
-
- setOnMouseDown(String) - Method in class com.hfg.html.Link
-
- setOnMouseDown(String) - Method in class com.hfg.html.Option
-
- setOnMouseDown(String) - Method in class com.hfg.html.P
-
- setOnMouseDown(String) - Method in class com.hfg.html.Pre
-
- setOnMouseDown(String) - Method in class com.hfg.html.Select
-
- setOnMouseDown(String) - Method in class com.hfg.html.Span
-
- setOnMouseDown(String) - Method in class com.hfg.html.Table
-
- setOnMouseDown(String) - Method in class com.hfg.html.Td
-
- setOnMouseDown(String) - Method in class com.hfg.html.Textarea
-
- setOnMouseDown(String) - Method in class com.hfg.html.Th
-
- setOnMouseDown(String) - Method in class com.hfg.html.Tr
-
- setOnMouseDown(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setOnMouseDown(String) - Method in class com.hfg.svg.SvgGroup
-
- setOnMouseDown(String) - Method in class com.hfg.svg.SvgPath
-
- setOnMouseDown(String) - Method in class com.hfg.svg.SvgRect
-
- setOnMouseMove(String) - Method in class com.hfg.html.Area
-
- setOnMouseMove(String) - Method in class com.hfg.html.Body
-
- setOnMouseMove(String) - Method in class com.hfg.html.Center
-
- setOnMouseMove(String) - Method in class com.hfg.html.Div
-
- setOnMouseMove(String) - Method in class com.hfg.html.Hr
-
- setOnMouseMove(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnMouseMove(String) - Method in class com.hfg.html.ImageMap
-
- setOnMouseMove(String) - Method in class com.hfg.html.Img
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputButton
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputFile
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputPassword
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputRadio
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputReset
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputSubmit
-
- setOnMouseMove(String) - Method in class com.hfg.html.InputText
-
- setOnMouseMove(String) - Method in class com.hfg.html.Label
-
- setOnMouseMove(String) - Method in class com.hfg.html.Li
-
- setOnMouseMove(String) - Method in class com.hfg.html.Link
-
- setOnMouseMove(String) - Method in class com.hfg.html.Option
-
- setOnMouseMove(String) - Method in class com.hfg.html.P
-
- setOnMouseMove(String) - Method in class com.hfg.html.Pre
-
- setOnMouseMove(String) - Method in class com.hfg.html.Select
-
- setOnMouseMove(String) - Method in class com.hfg.html.Span
-
- setOnMouseMove(String) - Method in class com.hfg.html.Table
-
- setOnMouseMove(String) - Method in class com.hfg.html.Td
-
- setOnMouseMove(String) - Method in class com.hfg.html.Textarea
-
- setOnMouseMove(String) - Method in class com.hfg.html.Th
-
- setOnMouseMove(String) - Method in class com.hfg.html.Tr
-
- setOnMouseOut(String) - Method in class com.hfg.html.Area
-
- setOnMouseOut(String) - Method in class com.hfg.html.Body
-
- setOnMouseOut(String) - Method in class com.hfg.html.Center
-
- setOnMouseOut(String) - Method in class com.hfg.html.Div
-
- setOnMouseOut(String) - Method in class com.hfg.html.Hr
-
- setOnMouseOut(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnMouseOut(String) - Method in class com.hfg.html.ImageMap
-
- setOnMouseOut(String) - Method in class com.hfg.html.Img
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputButton
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputFile
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputPassword
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputRadio
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputReset
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputSubmit
-
- setOnMouseOut(String) - Method in class com.hfg.html.InputText
-
- setOnMouseOut(String) - Method in class com.hfg.html.Label
-
- setOnMouseOut(String) - Method in class com.hfg.html.Li
-
- setOnMouseOut(String) - Method in class com.hfg.html.Link
-
- setOnMouseOut(String) - Method in class com.hfg.html.Option
-
- setOnMouseOut(String) - Method in class com.hfg.html.P
-
- setOnMouseOut(String) - Method in class com.hfg.html.Pre
-
- setOnMouseOut(String) - Method in class com.hfg.html.Select
-
- setOnMouseOut(String) - Method in class com.hfg.html.Span
-
- setOnMouseOut(String) - Method in class com.hfg.html.Table
-
- setOnMouseOut(String) - Method in class com.hfg.html.Td
-
- setOnMouseOut(String) - Method in class com.hfg.html.Textarea
-
- setOnMouseOut(String) - Method in class com.hfg.html.Th
-
- setOnMouseOut(String) - Method in class com.hfg.html.Tr
-
- setOnMouseOut(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setOnMouseOut(String) - Method in class com.hfg.svg.SvgPath
-
- setOnMouseOut(String) - Method in class com.hfg.svg.SvgRect
-
- setOnMouseOver(String) - Method in class com.hfg.html.Area
-
- setOnMouseOver(String) - Method in class com.hfg.html.Body
-
- setOnMouseOver(String) - Method in class com.hfg.html.Center
-
- setOnMouseOver(String) - Method in class com.hfg.html.Div
-
- setOnMouseOver(String) - Method in class com.hfg.html.Hr
-
- setOnMouseOver(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnMouseOver(String) - Method in class com.hfg.html.ImageMap
-
- setOnMouseOver(String) - Method in class com.hfg.html.Img
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputButton
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputFile
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputPassword
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputRadio
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputReset
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputSubmit
-
- setOnMouseOver(String) - Method in class com.hfg.html.InputText
-
- setOnMouseOver(String) - Method in class com.hfg.html.Label
-
- setOnMouseOver(String) - Method in class com.hfg.html.Li
-
- setOnMouseOver(String) - Method in class com.hfg.html.Link
-
- setOnMouseOver(String) - Method in class com.hfg.html.Option
-
- setOnMouseOver(String) - Method in class com.hfg.html.P
-
- setOnMouseOver(String) - Method in class com.hfg.html.Pre
-
- setOnMouseOver(String) - Method in class com.hfg.html.Select
-
- setOnMouseOver(String) - Method in class com.hfg.html.Span
-
- setOnMouseOver(String) - Method in class com.hfg.html.Table
-
- setOnMouseOver(String) - Method in class com.hfg.html.Td
-
- setOnMouseOver(String) - Method in class com.hfg.html.Textarea
-
- setOnMouseOver(String) - Method in class com.hfg.html.Th
-
- setOnMouseOver(String) - Method in class com.hfg.html.Tr
-
- setOnMouseOver(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setOnMouseOver(String) - Method in class com.hfg.svg.SvgPath
-
- setOnMouseOver(String) - Method in class com.hfg.svg.SvgRect
-
- setOnMouseUp(String) - Method in class com.hfg.html.Area
-
- setOnMouseUp(String) - Method in class com.hfg.html.Body
-
- setOnMouseUp(String) - Method in class com.hfg.html.Center
-
- setOnMouseUp(String) - Method in class com.hfg.html.Div
-
- setOnMouseUp(String) - Method in class com.hfg.html.Hr
-
- setOnMouseUp(String) - Method in class com.hfg.html.HTMLTagWithCoreEvents
-
- setOnMouseUp(String) - Method in class com.hfg.html.ImageMap
-
- setOnMouseUp(String) - Method in class com.hfg.html.Img
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputButton
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputCheckbox
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputFile
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputPassword
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputRadio
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputReset
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputSubmit
-
- setOnMouseUp(String) - Method in class com.hfg.html.InputText
-
- setOnMouseUp(String) - Method in class com.hfg.html.Label
-
- setOnMouseUp(String) - Method in class com.hfg.html.Li
-
- setOnMouseUp(String) - Method in class com.hfg.html.Link
-
- setOnMouseUp(String) - Method in class com.hfg.html.Option
-
- setOnMouseUp(String) - Method in class com.hfg.html.P
-
- setOnMouseUp(String) - Method in class com.hfg.html.Pre
-
- setOnMouseUp(String) - Method in class com.hfg.html.Select
-
- setOnMouseUp(String) - Method in class com.hfg.html.Span
-
- setOnMouseUp(String) - Method in class com.hfg.html.Table
-
- setOnMouseUp(String) - Method in class com.hfg.html.Td
-
- setOnMouseUp(String) - Method in class com.hfg.html.Textarea
-
- setOnMouseUp(String) - Method in class com.hfg.html.Th
-
- setOnMouseUp(String) - Method in class com.hfg.html.Tr
-
- setOnMouseUp(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setOnMouseUp(String) - Method in class com.hfg.svg.SvgGroup
-
- setOnReset(String) - Method in class com.hfg.html.Form
-
- setOnSelect(String) - Method in class com.hfg.html.InputText
-
- setOnSelect(String) - Method in class com.hfg.html.Textarea
-
- setOnSubmit(String) - Method in class com.hfg.html.Form
-
- setOpacity(Float) - Method in class com.hfg.svg.SVG
-
- setOpacity(int) - Method in class com.hfg.svg.SvgCircle
-
- setOpacity(int) - Method in class com.hfg.svg.SvgEllipse
-
- setOpacity(float) - Method in class com.hfg.svg.SvgGroup
-
Specifies a value for the opacity of children of this group (fill, stroke, and text).
- setOpacity(int) - Method in class com.hfg.svg.SvgLine
-
- setOpacity(int) - Method in class com.hfg.svg.SvgPolygon
-
- setOpacity(int) - Method in class com.hfg.svg.SvgPolyline
-
- setOpacity(float) - Method in class com.hfg.svg.SvgRect
-
Specifies a value for the opacity of this rectangle (both its fill and stroke).
- setOpacity(float) - Method in class com.hfg.svg.SvgSwitch
-
Specifies a value for the opacity of children of this group (fill, stroke, and text).
- setOpenPenalty(Float) - Method in class com.hfg.bio.seq.alignment.GapPenalties
-
- setOperator(CompositingOperatorType) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setOperator(MorphologyOperator) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
A keyword indicating whether to erode (i.e., thin) or dilate (fatten) the source graphic.
- setOperator(SsmlCfOperator) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setOrder(int) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setOrder(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setOrganicAverageMass(Double) - Method in class com.hfg.chem.Molecule
-
If the elemental composition is known, use setElementalComposition() and
the masses will be derived automatically; this method is for use in those
(hopefully) rare times when the mass is known but not the elemental composition.
- setOrganismTaxon(NCBITaxon) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setOrientation(Orientation) - Method in class com.hfg.graphics.PageSetup
-
- setOrientation(String) - Method in class com.hfg.svg.SvgMarker
-
- setOrientation(Orientation) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- setOutlineLevel(Integer) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- setOutputFile(File) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- setOutputFile(File) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setOutputFormat(MuscleOutputFormat) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleSettings
-
- setOwner(String) - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- setP1PrimeSpecificity(String) - Method in class com.hfg.bio.Protease
-
- setP1Specificity(String) - Method in class com.hfg.bio.Protease
-
- setP2PrimeSpecificity(String) - Method in class com.hfg.bio.Protease
-
- setP2Specificity(String) - Method in class com.hfg.bio.Protease
-
- setP3PrimeSpecificity(String) - Method in class com.hfg.bio.Protease
-
- setP3Specificity(String) - Method in class com.hfg.bio.Protease
-
- setP4Specificity(String) - Method in class com.hfg.bio.Protease
-
- setP5Specificity(String) - Method in class com.hfg.bio.Protease
-
- setP6Specificity(String) - Method in class com.hfg.bio.Protease
-
- setPackage(Package) - Method in class com.hfg.util.StackTraceElementFilter
-
- setPadding(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setPadding(int) - Method in class com.hfg.javascript.TooltipJS
-
- setPadding(GfxSize) - Method in class com.hfg.math.HistogramSvgSettings
-
- setPadding(GfxSize) - Method in class com.hfg.svg.SvgGenerationSettings
-
- setPageBreakBefore(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
Specifies whether or not this paragraph should be preceded by a page break.
- setPageLayoutViewZoomScale(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the zoom magnification when in page layout view, representing percent values.
- setPages(Range<Integer>) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setPages(String) - Method in class com.hfg.citation.Citation
-
- setPageSize(PaperSize, Orientation) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSectionProperties
-
Sets the page dimensions based on the specified paper size and orientation.
- setPageSize(PaperSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlSectionProperties
-
Sets the page dimensions based on the specified paper size.
- setPaint(Paint) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setPaintMode() - Method in class com.hfg.graphics.SvgGraphics2D
-
Sets the paint mode of this graphics context to overwrite the destination
with this graphics context's current color.
- setPairedAssemblyComparison(GenomicPairedAssemblyComparison) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setPaperSize(PaperSize) - Method in class com.hfg.graphics.PageSetup
-
- setParameter(String, String[]) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- setParentDoc(OfficeOpenXmlDocument) - Method in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
- setParentDoc(OfficeOpenXmlDocument) - Method in class com.hfg.xml.msofficexml.part.OfficeXMLPart
-
- setParentDoc(Xlsx) - Method in class com.hfg.xml.msofficexml.xlsx.part.XlsxPart
-
- setParentLogger(Logger) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setParentNode(XMLContainer) - Method in interface com.hfg.xml.XMLContainer
-
Specifies the parent XMLContainer of this XMLContainer.
- setParentNode(XMLContainer) - Method in class com.hfg.xml.XMLContainerImpl
-
- setParentProtein(Protein) - Method in class com.hfg.bio.seq.ProteinXLink
-
Sets the protein container to which this x-link belongs.
- setParentStyleId(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setParentTaxonId(int) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setPart(OfficeXMLContentPart) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlContentContainer
-
- setPart(OfficeXMLPart) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- SetPartitionIterator<T> - Class in com.hfg.math
-
Iterator for enumerating the possible set partitions of a specified set.
- SetPartitionIterator(Set<T>, Integer, SetPartitionIterator.Flag...) - Constructor for class com.hfg.math.SetPartitionIterator
-
- SetPartitionIterator.Flag - Enum in com.hfg.math
-
- setPatentData(PatentData) - Method in class com.hfg.citation.Citation
-
- setPatternType(SsmlPatternType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- setPctIdColorScale(ColorScale) - Method in class com.hfg.graphics.Track2D
-
- setPctValue(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setPenAlignmentType(DmlPenAlignmentType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the pen alignment type.
- setPenalizeTerminalGaps(boolean) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setPenalizeTerminalGaps(PairwiseSeqType, boolean) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setPenalizeTerminalGaps(PairwiseSeqType, PairwiseSeqTerminus, boolean) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setPenalizeTerminalGaps(boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setPenalizeTerminalGaps(PairwiseSeqType, boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setPenalizeTerminalGaps(PairwiseSeqType, PairwiseSeqTerminus, boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setPercentIdentity(Float) - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Sets the percent identity of the query sequence to the mapping target for the
region(s) mapped.
- setPhoneNumber(String) - Method in interface com.hfg.util.User
-
- setPhoneNumber(String) - Method in class com.hfg.util.UserImpl
-
- setPhysicalProperty(PhysicalProperty, Double) - Method in class com.hfg.chem.Molecule
-
- setPin(boolean) - Method in class com.hfg.javascript.PopupMenuJS
-
Specify whether or not to 'pin' the menu once it is opened.
- setPivot(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlConditionalFormatting
-
- setPlaceOfPublication(String) - Method in class com.hfg.citation.Citation
-
- setPlural(String) - Method in class com.hfg.units.LengthUnit
-
- setPlural(String) - Method in class com.hfg.units.TimeUnit
-
- setPlural(String) - Method in class com.hfg.units.Unit
-
- setPluralAbbrev(String) - Method in class com.hfg.units.LengthUnit
-
- setPluralAbbrev(String) - Method in class com.hfg.units.TimeUnit
-
- setPluralAbbrev(String) - Method in class com.hfg.units.Unit
-
- setPoints(List<? extends Point2D>) - Method in class com.hfg.svg.SvgPolygon
-
- setPoints(String) - Method in class com.hfg.svg.SvgPolygon
-
- setPoints(List<? extends Point2D>) - Method in class com.hfg.svg.SvgPolyline
-
- setPoints(String) - Method in class com.hfg.svg.SvgPolyline
-
- setPointsAtX(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
X location in the coordinate system established by attribute primitiveUnits
on the 'filter' element of the point at which the light source is pointing.
- setPointsAtY(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
Y location in the coordinate system established by attribute primitiveUnits
on the 'filter' element of the point at which the light source is pointing.
- setPointsAtZ(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
Z location of the point at which the light source is pointing, assuming that,
in the initial coordinate system, the positive Z-axis comes out towards the
person viewing the content and assuming that one unit along the Z-axis equals
one unit in X or Y.
- setPoolable(Boolean) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setPort(int) - Method in class com.hfg.sql.jdbc.JDBCServer
-
Specifies the port to use to connect to the database via JDBC.
- setPort(Integer) - Method in class com.hfg.util.io.ProxyConfig
-
- setPosition(Point2D) - Method in class com.hfg.svg.AbstractSvgNode
-
Specifies the upper left corner of the bounding rectangle.
- setPosition(Point2D) - Method in class com.hfg.svg.SvgCircle
-
Specifies the upper left corner of the bounding rectangle.
- setPosition(Point2D) - Method in interface com.hfg.svg.SvgNode
-
- setPosition(Point2D) - Method in class com.hfg.svg.SvgRect
-
- setPosition(ExcelBorderPosition) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorder
-
- setPosition(Percent) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientStop
-
- setPosition(WmlTableBorder.Position) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
If a position is not specified via this method, a complete border set (top, end, bottom, and start) will be generated.
- setPosition(WmlTableCellBorder.Position) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
If a position is not specified via this method, a complete border set (top, end, bottom, and start) will be generated.
- setPosition(WmlTableCellMargin.Position) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellMargin
-
If a position is not specified via this method, a complete border set (top, end, bottom, and start) will be generated.
- setPosition(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
Specifies the position of the tab.
- setPrecedingResidue(Character) - Method in class com.hfg.bio.DigestFragment
-
- setPreferredName(String) - Method in interface com.hfg.util.User
-
- setPreferredName(String) - Method in class com.hfg.util.UserImpl
-
- setPrefix(String) - Method in class com.hfg.xml.XMLAttribute
-
The namespace prefix of this attribute, or null if it is unspecified.
- setPreserveAlpha(boolean) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setPrevCmdControlPoint(Point2D.Float) - Method in class com.hfg.svg.path.SvgPathSmoothQuadCurveToCmd
-
- setPrevCmdSecondControlPoint(Point2D.Float) - Method in class com.hfg.svg.path.SvgPathSmoothCurveToCmd
-
- setPrimaryStyle(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
Specifies whether this is a "Primary Style" which should be included in the Quick Gallery.
- setPrincipalContext(String) - Method in class com.hfg.ldap.LDAPClient
-
- setPrincipalContext(LdapName) - Method in class com.hfg.ldap.LDAPClient
-
- setPrincipalCredentials(LoginCredentials) - Method in class com.hfg.ldap.LDAP_Config
-
- setPrincipalCredentials(LoginCredentials) - Method in class com.hfg.ldap.LDAPClient
-
Specifies the credentials to be used to access the LDAP server.
- setPrincipalFieldName(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setPrincipalFieldName(String) - Method in class com.hfg.ldap.LDAPClient
-
- setPrincipalSuffix(String) - Method in class com.hfg.ldap.LDAPClient
-
- setPrintArea(CellRange) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setPrintStyle(int) - Method in class com.hfg.xml.XMLEmitter
-
- setPriority(Priority) - Method in class com.hfg.util.PrioritizedFutureTask
-
- setPriority(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setProbabilityThreshold(float) - Method in class com.hfg.bio.seq.NucleicAcidTrimmer
-
- setProperties(DmlTextRunProperties) - Method in class com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextRun
-
- setProperties(WmlStructuredDocumentTagProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTag
-
- setProperties(WmlTextRunProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRun
-
- setProperty(String, String) - Method in class com.hfg.util.collection.DirtyProperties
-
- setProperty(String, Object) - Method in class com.hfg.xml.parser.SaxyParser
-
- setPrositePattern(String) - Method in class com.hfg.bio.seq.pattern.SeqPattern
-
- setProtease(Protease) - Method in class com.hfg.bio.DigestSettings
-
- setProteases(Collection<Protease>) - Method in class com.hfg.bio.DigestSettings
-
- setProtected(boolean) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet
-
Specifies whether the user can make changes to this Worksheet.
- setProteinAnalysisMode(ProteinAnalysisMode) - Method in class com.hfg.bio.proteinproperty.SimpleProteinPropertyCalcSettings
-
- setProteinFactory(ProteinFactory) - Method in class com.hfg.bio.seq.translation.NucleicAcidTranslator
-
- setProxyHost(String) - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- setProxyPassword(String) - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- setProxyPort(int) - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- setProxyUser(String) - Method in class com.hfg.util.io.FTPRemoteFileLister
-
- setPublicationDate(Date) - Method in class com.hfg.citation.PatentData
-
- setPublicationNum(String) - Method in class com.hfg.citation.PatentData
-
- setPublicId(String) - Method in class com.hfg.xml.Doctype
-
- setPublisher(String) - Method in class com.hfg.citation.Citation
-
- setPubmedId(Integer) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setPubMedId(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setPValue(Float) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setPValue(Float) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setQueryAlignmentType(PairwiseAlignmentType) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setQueryLength(Integer) - Method in class com.hfg.bio.seq.SeqMappingCoverage
-
Sets the length of the query sequence that was mapped.
- setQueryTimeout(Integer) - Method in class com.hfg.sql.jdbc.SQLStatementOptions
-
- setR(int) - Method in class com.hfg.svg.SvgCircle
-
- setR(float) - Method in class com.hfg.svg.SvgCircle
-
- setR(double) - Method in class com.hfg.svg.SvgCircle
-
- setRadius(float) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
The radius (or radii) for the operation.
- setRadius(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
The radius (or radii) for the operation.
- setRangeLabelFormatString(String) - Method in class com.hfg.math.HistogramSvgSettings
-
- setRank(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setRawContent(String) - Method in class com.hfg.citation.Citation
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathClosePathCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathCurveToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathEllipticalArcCmd
-
- setRawNumbers(Float...) - Method in class com.hfg.svg.path.SvgPathEllipticalArcCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathHorizLineToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathLineToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathMoveToCmd
-
- setRawNumbers(Float...) - Method in class com.hfg.svg.path.SvgPathMoveToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathSmoothCurveToCmd
-
- setRawNumbers(List<Float>) - Method in class com.hfg.svg.path.SvgPathVertLineToCmd
-
- setRDBMS(RDBMS) - Method in class com.hfg.sql.table.DatabaseTable
-
- setReadOnly(boolean) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setRecognitionSequence(String) - Method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- setRef(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setReference(String) - Method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- setReferences(List<SeqCitation>) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setReferences(List<MedlineCitation>) - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- setReferralHandling(LDAPClient.ReferralHandling) - Method in class com.hfg.ldap.LDAP_Config
-
- setReferralHandling(LDAPClient.ReferralHandling) - Method in class com.hfg.ldap.LDAPClient
-
- setRefSeqCategory(GenomicRefSeqCategory) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setRefX(int) - Method in class com.hfg.svg.SvgMarker
-
- setRefX(String) - Method in class com.hfg.svg.SvgMarker
-
- setRefY(int) - Method in class com.hfg.svg.SvgMarker
-
- setRefY(String) - Method in class com.hfg.svg.SvgMarker
-
- setRelationToTypeMaterial(GenomicRelationToTypeMaterial) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setReleaseDate(Date) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setRemark(String) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setRemovePersonalInfo(boolean) - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
Specifies that hosting applications shall remove all personal information of
document authors upon saving a given WordprocessingML document.
- setRenderer(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
Specifies a method name or method definition for composing the display ov column fields.
- setRenderingHint(RenderingHints.Key, Object) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setRenderingHints(Map<?, ?>) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setRepository(String) - Method in class com.hfg.citation.Citation
-
Specifies the repository in which the citation source was accessed.
- setRequestedPath(String) - Method in class com.hfg.util.io.FileSystemRemoteFile
-
- setRequestedPath(String) - Method in class com.hfg.util.io.FTPRemoteFile
-
- setRequestedPath(String) - Method in class com.hfg.util.io.HTTPRemoteFile
-
- setRequired(boolean) - Method in class com.hfg.html.Select
-
- setRequiredExtensions(String) - Method in class com.hfg.svg.SvgForeignObject
-
- setResidueAt(int, char) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
Specifies the residue to use at the specified (1-based) sequence location.
- setResizable(boolean) - Method in class com.hfg.html.Frame
-
- setResizable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setResolutionInDPI(int) - Static method in class com.hfg.graphics.units.GfxSizeImpl
-
- setRestartNumberingAfterBreak(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlAbstractNumbering
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeMerge
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setResult(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setRetrievedByDefault(boolean) - Method in class com.hfg.sql.table.DatabaseCol
-
- setReturnOnlyMostRecentFile(boolean) - Method in class com.hfg.util.io.AbstractRemoteFileLister
-
- setReturnOnlyMostRecentFile(boolean) - Method in interface com.hfg.util.io.RemoteFileLister
-
- setRevision(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setRevisionDate(Date) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setRevisionDate(Date) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setRight(GfxSize) - Method in class com.hfg.graphics.PageMargins
-
- setRight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlIndentation
-
Specifies the right indentation for this paragraph in absolute units.
- setRight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlEffectExtent
-
Specifies the additional extent to add to the right of the drawing.
- setRight(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twips or twentieths of a point) from the right edge of the page to the right edge of the text.
- setRight(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setRightToLeft(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether the sheet is in 'right to left' display mode.
- setRootDirection(Edge<PhyloNode>) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setRootNode(PhyloNode) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setRootNode(HTML) - Method in class com.hfg.html.HTMLDoc
-
- setRootNode(XMLNode) - Method in class com.hfg.xml.XMLBasedDoc
-
- setRotateWithShape(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill
-
Specifies if the gradient fill rotates with the shape when the shape is rotated.
- setRowBandSize(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- setRowIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.CellRef
-
Specifies the row index as a 1-based number.
- setRowIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- setRowKey(RK) - Method in class com.hfg.util.collection.MatrixCell
-
- setRows(String) - Method in class com.hfg.html.Frameset
-
- setRows(int) - Method in class com.hfg.html.Textarea
-
- setRowSpan(int) - Method in class com.hfg.html.Td
-
- setRowSpan(int) - Method in class com.hfg.html.Th
-
- setRx(int) - Method in class com.hfg.svg.SvgEllipse
-
- setRx(int) - Method in class com.hfg.svg.SvgRect
-
- setRy(int) - Method in class com.hfg.svg.SvgEllipse
-
- setRy(int) - Method in class com.hfg.svg.SvgRect
-
- setSampleStandardDeviation(Double) - Method in class com.hfg.math.StandardNormalDistribution
-
- setSavepoint() - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setSavepoint(String) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setSavePreviewPicture(boolean) - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
Specifies if a document's Thumbnail part should be generated for the contents
of the first page of this document when saved by application which support
document thumbnail generation.
- setScale(int) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
Displacement scale factor.
- setScaled(boolean) - Method in class com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill
-
Specifies whether the angle scales with the fill region.
- setScalePaddingTop(GfxSize) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setScaleTickHeight(int) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setScaleWithDoc(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- setScalingFactor(float) - Method in class com.hfg.xml.msofficexml.part.ImagePart
-
Specifies the scaling factor that was used (for informational purposes).
- setSchema(String) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setSchema(Schema) - Method in class com.hfg.sql.table.DatabaseTable
-
- setScheme(SeqQualityScoreScheme) - Method in class com.hfg.bio.seq.format.FASTQ
-
- setScientificName(String) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setScoped() - Method in class com.hfg.html.StyleTag
-
- setScore(Float) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setScore(Float) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setScoreCaseInsensitive(boolean) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
If specified as true, the scoring matrix's scoreCaseInsensitive() method is used.
- setScoreCaseInsensitive(boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
If specified as true, the scoring matrix's scoreCaseInsensitive() method is used.
- setScoringBoundaries(List<Range<Integer>>) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
Specifies an optional 1-based list of alignment position ranges which should
be considered for scoring.
- setScrolling(boolean) - Method in class com.hfg.html.Frame
-
- setSecondAtom(Atom) - Method in class com.hfg.chem.CovalentBond
-
- setSecondControlPoint(Point2D.Float) - Method in class com.hfg.svg.path.SvgPathCurveToCmd
-
- setSeed(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setSelected(boolean) - Method in class com.hfg.html.Option
-
- setSelected(boolean) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheetOptions
-
- setSelectedValue(String) - Method in class com.hfg.html.Select
-
- setSelection(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
- setSemiHidden() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setSemiHidden() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setSemiHidden() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setSeq(BioSequence) - Method in class com.hfg.bio.seq.alignment.AlignedSeq
-
- setSeqIdNum(Integer) - Method in class com.hfg.citation.PatentData
-
- setSeqLength(Integer) - Method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureLocation
-
- setSeqLength(Integer) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setSeqLocation(SeqLocation) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setSeqMappingCoverage(SeqMappingCoverage) - Method in class com.hfg.bio.seq.Gene
-
- setSeqMappingCoverage(SeqMappingCoverage) - Method in class com.hfg.graphics.Gene2D
-
- setSeqQualityScores(SeqQualityScores) - Method in class com.hfg.bio.seq.NucleicAcid
-
- setSeqRepositoryDivision(SeqRepositoryDivision) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setSeqRepositoryDivision(SeqRepositoryDivision) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setSeqTopology(SeqTopology) - Method in interface com.hfg.bio.seq.BioSequencePlus
-
- setSeqTopology(SeqTopology) - Method in class com.hfg.bio.seq.BioSequencePlusImpl
-
- setSeqType(BioSequenceType) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Database
-
- setSequence(CharSequence) - Method in interface com.hfg.bio.seq.BioSequence
-
- setSequence(Reader) - Method in interface com.hfg.bio.seq.BioSequence
-
- setSequence(CharSequence) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setSequence(Reader) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setSequence(String) - Method in class com.hfg.bio.seq.genomic.Intron
-
- setSequence(CharSequence) - Method in class com.hfg.bio.seq.NucleicAcid
-
- setSequence(String) - Method in class com.hfg.bio.seq.pattern.NucleotidePatternMatch
-
- setSequence(String) - Method in class com.hfg.bio.seq.pattern.ProteinPatternMatch
-
- setSequence(String) - Method in class com.hfg.bio.seq.pattern.SeqPatternMatch
-
- setSequence(CharSequence) - Method in class com.hfg.bio.seq.Protein
-
Specifies the protein's sequence.
- setSequence(Reader) - Method in class com.hfg.bio.seq.Protein
-
Specifies the protein's sequence.
- setSequence(DatabaseSequence) - Method in class com.hfg.sql.table.DatabaseCol
-
- setServerURL(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setServerURL(String) - Method in class com.hfg.ldap.LDAPClient
-
- setSettings(MSA_Settings) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAligner
-
- setSettings(PairwiseSettings) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAligner
-
- setSettings(PairwiseSettings) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- setSettings(T) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- setShadow(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
Whether or not to add a shadow to the border.
- setShadow(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
- setShadow() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setShadow(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setShadow(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setShadowColor(String) - Method in class com.hfg.javascript.HoverboardMaker
-
- setShadowColor(String) - Method in class com.hfg.javascript.TooltipJS
-
- setShadowOffset(int) - Method in class com.hfg.javascript.TooltipJS
-
- setShadowWidth(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setShape(Shape) - Method in class com.hfg.html.Area
-
- setShape(DmlShapeType) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlPresetGeometry
-
- setShape(DmlShapeType, GfxSize2D) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawDrawingAnchor
-
- setSheetIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.part.WorksheetPart
-
- setSheetLayoutViewZoomScale(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the zoom magnification when in page break preview, representing percent values.
- setShell(File) - Method in class com.hfg.util.Executor
-
Sets the shell to be used for command execution.
- setShort(PreparedStatement, int, Short) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setShort().
- setShortcutIconLink(String) - Method in class com.hfg.html.Head
-
Adds a link to a shortcut icon.
- setShowAlways(boolean) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelComment
-
Specifies whether this comment is displayed regardless of whether the user is hovering over the cell or not.
- setShowBranchLengthTraversalLimit(boolean) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setShowFormulas(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not to display formulas.
- setShowGridLines(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not to display grid lines.
- setShowId(boolean) - Method in class com.hfg.graphics.Gene2D
-
- setShowId(boolean) - Method in class com.hfg.graphics.Track
-
- setShowId(boolean) - Method in class com.hfg.graphics.Track2D
-
- setShowInkAnnotation(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- setShowOutlineSymbols(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not the sheet has outline symbols visible.
- setShowRowColHeaders(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not to display row and column headers.
- setShowScale(boolean) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setShowValue(Boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
Specifies whether or not to display the numeric value to the right of the data bar.
- setShowWhiteSpace(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not page layout view shall display margins.
- setShowZeros(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not to display zero values.
- setSidechainKas(Collection<IonizableGroup>) - Method in class com.hfg.bio.AminoAcid
-
Sets the sidechain Ka's.
- setSize(int) - Method in class com.hfg.html.Hr
-
- setSize(int) - Method in class com.hfg.html.InputFile
-
- setSize(int) - Method in class com.hfg.html.InputPassword
-
- setSize(int) - Method in class com.hfg.html.InputText
-
- setSize(int) - Method in class com.hfg.html.Select
-
- setSize(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFont
-
- setSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
Specifies the width of the border in eighths of a point, with a minimum value
of 1/4 of a point and a maximum value of twelve points.
- setSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
- setSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
Specifies the width of the border in eighths of a point, with a minimum value
of 1/4 of a point and a maximum value of twelve points.
- setSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
Specifies the width of the border in eighths of a point, with a minimum value
of 1/4 of a point and a maximum value of twelve points.
- setSize(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
Specifies a positive measurement of font size.
- setSize(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setSlope(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setSlope(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setSlope(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setSlope(float) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setSmallCaps() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setSoftMasking(Boolean) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
Apply filtering locations as soft masks.
- setSortable(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setSortAttributesBeforeWriting(boolean) - Method in class com.hfg.xml.XMLTag
-
- setSortedCellIndex(int) - Method in class com.hfg.util.collection.MatrixCell
-
- setSortState(SsmlSortState) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- setSortType(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
sortType isn't a true column property but is included here so that the
information can be transferred to the corresponding model field if desired.
- setSortType(String) - Method in class com.hfg.javascript.ext.ExtModelField
-
- setSource(String) - Method in class com.hfg.citation.Citation
-
Specifies the origin of the citation material.
- setSpace(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorder
-
The padding (in points) between the text and the border.
- setSpace(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
The padding (in points) between the text and the border.
- setSpace(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
The padding (in points) between the text and the border.
- setSpace(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
The padding between the text and the border.
- setSpan(int) - Method in class com.hfg.html.Col
-
- setSpan(int) - Method in class com.hfg.html.Colgroup
-
- setSpan(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
The Span attribute of a Column element the specified number of columns to the right
of the Column element with the Span attribute to be formatted exactly like that Column element.
- setSpec(XMLSpec) - Method in class com.hfg.xml.XMLBasedDoc
-
- setSpec(XMLSpec) - Method in class com.hfg.xml.XMLDoc
-
- setSpecies(NCBITaxon) - Method in class com.hfg.bio.seq.Gene
-
- setSpecies(NCBITaxon) - Method in class com.hfg.graphics.Gene2D
-
- setSpeciesListFile(File) - Static method in class com.hfg.bio.taxonomy.uniprot.UniprotSpecies
-
Used to load a newer version of the speclist.txt file.
- setSpeciesTaxon(NCBITaxon) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setSpecularExponent(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
Exponent value controlling the focus for the light source.
- setSrc(String) - Method in class com.hfg.anttask.GetWild
-
The remote file for retrieval.
- setSrc(String) - Method in class com.hfg.html.Frame
-
- setSrc(String) - Method in class com.hfg.html.IFrame
-
- setSrc(CharSequence) - Method in class com.hfg.html.Img
-
- setSrc(String) - Method in class com.hfg.html.Script
-
Specifies the location of an external script.
- setSrcChainId(String) - Method in class com.hfg.bio.DigestFragment
-
- setStandby(String) - Method in class com.hfg.html.ObjectTag
-
This attribute specifies a message that a user agent may render while loading
the object's implementation and data.
- setStart(Integer) - Method in class com.hfg.bio.seq.SeqLocation
-
- setStart(Integer) - Method in class com.hfg.math.IntRange
-
Deprecated.
- setStart(T) - Method in class com.hfg.math.Range
-
- setStartingPoint(Point2D.Float) - Method in class com.hfg.svg.path.SvgPathCmd
-
- setStartingValue(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setStartLocation(int) - Method in class com.hfg.bio.seq.Gene
-
- setStartLocation(int) - Method in class com.hfg.graphics.Gene2D
-
- setState(SsmlPaneState) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Specifies the split state of the pane.
- setStatus(MedlineCitationStatus) - Method in class com.hfg.citation.ncbi.MedlineCitation
-
- setStdDev(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setStdDeviation(int) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setStdDeviation(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setStdErr(String) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- setStdErr(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- setSTDIN(String) - Method in class com.hfg.util.Executor
-
Sets the STDIN content for the command to be executed.
- setSTDIN(InputStream) - Method in class com.hfg.util.Executor
-
Sets the STDIN content for the command to be executed.
- setStdOut(String) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Output
-
- setStdOut(String) - Method in class com.hfg.bio.seq.alignment.muscle.MuscleOutput
-
- setStitchTiles(boolean) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setStopIfTrue(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setStrand(Strand) - Method in class com.hfg.bio.seq.Exon
-
- setStrand(Strand) - Method in class com.hfg.bio.seq.Gene
-
- setStrand(Strand) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setStrand(Strand) - Method in class com.hfg.bio.seq.pattern.NucleotidePatternMatch
-
- setStrand(Strand) - Method in class com.hfg.graphics.Gene2D
-
- setStrandsToSearch(Strand) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- setStrandsToSearch(Strand[]) - Method in class com.hfg.bio.seq.pattern.NucleotidePattern
-
- setStrikeThrough() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setStrikeThrough(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setStrikeThrough(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setString(PreparedStatement, int, String) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setString().
- setStringFormat(String) - Method in class com.hfg.graphics.DataStylist
-
- setStringFormat(String) - Method in class com.hfg.graphics.DataStylistGenerator
-
- setStroke(Stroke) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setStroke(Color) - Method in class com.hfg.svg.SvgCircle
-
- setStroke(Color) - Method in class com.hfg.svg.SvgEllipse
-
- setStroke(Color) - Method in class com.hfg.svg.SvgLine
-
- setStroke(Color) - Method in class com.hfg.svg.SvgPath
-
- setStroke(Color) - Method in class com.hfg.svg.SvgPolygon
-
- setStroke(Color) - Method in class com.hfg.svg.SvgPolyline
-
- setStroke(Color) - Method in class com.hfg.svg.SvgRect
-
- setStrokeOpacity(float) - Method in class com.hfg.svg.SvgRect
-
Specifies a value for the stroke opacity of this rectangle.
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgCircle
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgEllipse
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgLine
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgPath
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgPolygon
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgPolyline
-
- setStrokeWidth(int) - Method in class com.hfg.svg.SvgRect
-
- setStyle(CharSequence) - Method in class com.hfg.html.Body
-
- setStyle(String) - Method in class com.hfg.html.Center
-
- setStyle(CharSequence) - Method in class com.hfg.html.Col
-
- setStyle(CharSequence) - Method in class com.hfg.html.Colgroup
-
- setStyle(CharSequence) - Method in class com.hfg.html.Div
-
- setStyle(CharSequence) - Method in class com.hfg.html.Frame
-
- setStyle(String) - Method in class com.hfg.html.H1
-
- setStyle(String) - Method in class com.hfg.html.H2
-
- setStyle(CharSequence) - Method in class com.hfg.html.H3
-
- setStyle(CharSequence) - Method in class com.hfg.html.Hr
-
- setStyle(CharSequence) - Method in class com.hfg.html.HTMLTag
-
- setStyle(String) - Method in class com.hfg.html.IFrame
-
- setStyle(String) - Method in class com.hfg.html.Img
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputButton
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputCheckbox
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputFile
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputPassword
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputRadio
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputReset
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputSubmit
-
- setStyle(CharSequence) - Method in class com.hfg.html.InputText
-
- setStyle(CharSequence) - Method in class com.hfg.html.Label
-
- setStyle(CharSequence) - Method in class com.hfg.html.Li
-
- setStyle(CharSequence) - Method in class com.hfg.html.Link
-
- setStyle(String) - Method in class com.hfg.html.Ol
-
- setStyle(CharSequence) - Method in class com.hfg.html.OptGroup
-
- setStyle(CharSequence) - Method in class com.hfg.html.Option
-
- setStyle(CharSequence) - Method in class com.hfg.html.P
-
- setStyle(CharSequence) - Method in class com.hfg.html.Pre
-
- setStyle(CharSequence) - Method in class com.hfg.html.Select
-
- setStyle(CharSequence) - Method in class com.hfg.html.Span
-
- setStyle(CharSequence) - Method in class com.hfg.html.Table
-
- setStyle(CharSequence) - Method in class com.hfg.html.TBody
-
- setStyle(CharSequence) - Method in class com.hfg.html.Td
-
- setStyle(CharSequence) - Method in class com.hfg.html.Textarea
-
- setStyle(CharSequence) - Method in class com.hfg.html.TFoot
-
- setStyle(CharSequence) - Method in class com.hfg.html.Th
-
- setStyle(CharSequence) - Method in class com.hfg.html.THead
-
- setStyle(CharSequence) - Method in class com.hfg.html.Tr
-
- setStyle(String) - Method in class com.hfg.html.Ul
-
- setStyle(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setStyle(String) - Method in class com.hfg.svg.SVG
-
- setStyle(String) - Method in class com.hfg.svg.SvgCircle
-
- setStyle(String) - Method in class com.hfg.svg.SvgEllipse
-
- setStyle(String) - Method in class com.hfg.svg.SvgGroup
-
- setStyle(String) - Method in class com.hfg.svg.SvgLine
-
- setStyle(String) - Method in class com.hfg.svg.SvgLink
-
- setStyle(String) - Method in class com.hfg.svg.SvgPath
-
- setStyle(String) - Method in class com.hfg.svg.SvgPolygon
-
- setStyle(String) - Method in class com.hfg.svg.SvgPolyline
-
- setStyle(String) - Method in class com.hfg.svg.SvgRect
-
- setStyle(String) - Method in class com.hfg.svg.SvgSwitch
-
- setStyle(String) - Method in class com.hfg.svg.SvgSymbol
-
- setStyle(String) - Method in class com.hfg.svg.SvgText
-
- setStyle(String) - Method in class com.hfg.svg.SvgTSpan
-
- setStyle(WmlLineBorderStyle) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder
-
- setStyle(WmlLineBorderStyle) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder
-
- setStyle(WmlLineBorderStyle) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextBorder
-
- setStyle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraphProperties
-
- setStyle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setStyle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- setStyle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
- setStyle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setStyle(SsmlCellFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
Sets the style to apply to this column's cells.
- setStyle(SsmlCellStyle) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setStyleColor(Color) - Method in class com.hfg.html.HTMLTag
-
Sets the CSS color declaration in the existing style attribute content or,
if no color declaration exists, one is added.
- setStyleFormat(SsmlStyleFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- setStyleFormat(SsmlStyleFormat) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- setStyleId(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelCell
-
- setStyleId(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
- setStyleId(String) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelRow
-
- setSubcloneName(String) - Method in class com.hfg.bio.seq.Clone
-
- setSubject(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setSubjectAlignmentType(PairwiseAlignmentType) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setSubjectTemplateMode(boolean) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
If specified as true, query gaps are not penalized if they exist in the subject.
- setSubmissionDate(Date) - Method in class com.hfg.bio.seq.format.SeqCitation
-
- setSubmitter(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setSubscript() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setSubstitutionMatrix(SubstitutionMatrix) - Method in class com.hfg.bio.seq.alignment.MSA_Settings
-
- setSubstitutionMatrix(SubstitutionMatrix) - Method in class com.hfg.bio.seq.alignment.PairwiseSettings
-
- setSubtags(List<T>) - Method in interface com.hfg.xml.XMLContainer
-
Sets the subtags of this object to those specified.
- setSubtags(List<T>) - Method in class com.hfg.xml.XMLContainerImpl
-
- setSuperscript() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setSurfaceScale(int) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
Sets the height of surface when Ain = 1.
- setSurname(String) - Method in interface com.hfg.util.User
-
- setSurname(String) - Method in class com.hfg.util.UserImpl
-
- setSynonyms(Collection<String>) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setSystemId(String) - Method in class com.hfg.xml.Doctype
-
- setTabIndex(int) - Method in class com.hfg.html.ObjectTag
-
- setTable(DatabaseTable) - Method in class com.hfg.sql.SQLDelete
-
- setTable(DatabaseTable) - Method in class com.hfg.sql.SQLInsert
-
- setTable(DatabaseTable) - Method in class com.hfg.sql.SQLUpdate
-
- setTable(DatabaseTable) - Method in class com.hfg.sql.table.DatabaseCol
-
- setTabLeader(WmlTabLeader) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
Specifies the character used to fill in the space created by the tab.
- setTableCellSpacing(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
Specifies the spacing between adjacent cells and the edges of the table.
- setTableHeader(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableRowProperties
-
Repeat Table Row on Every New Page.
- setTableIndent(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
Specifies the table indent from the leading margin.
- setTableIndex(int) - Method in class com.hfg.xml.msofficexml.xlsx.part.TablePart
-
- setTableValues(String) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setTableValues(String) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setTableValues(String) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setTableValues(String) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setTabSelected(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not the sheet tab is selected.
- setTabStyle(WmlTabStyle) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTab
-
Specifies the style for the tab.
- setTagName(XMLName) - Method in class com.hfg.setting.Settings
-
- setTagName(XMLName) - Method in interface com.hfg.xml.XMLNode
-
- setTagName(String) - Method in interface com.hfg.xml.XMLNode
-
- setTagName(XMLName) - Method in class com.hfg.xml.XMLTag
-
- setTagName(String) - Method in class com.hfg.xml.XMLTag
-
- setTarget(String) - Method in class com.hfg.html.Area
-
- setTarget(String) - Method in class com.hfg.html.Form
-
- setTarget(String) - Method in class com.hfg.html.Link
-
The target for the link can be set to one of several special values or a tab/window name of your choosing.
- setTarget(String) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- setTargetMode(String) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- setTargetQuantity(Quantity) - Method in class com.hfg.chem.solution.AqueousSolution
-
The target quantity is the amount of solution intended to be made.
- setTargetX(float) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setTargetY(float) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setTaxon(NCBITaxon) - Method in class com.hfg.bio.seq.GenomicLocation
-
- setTaxonomyRank(NCBITaxonNodeRank) - Method in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
- setTentative(boolean) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingLevelDef
-
- setText(String) - Method in class com.hfg.html.Option
-
- setText(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setText(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
- setText(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setText(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRun
-
- setText(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- setText(SsmlTextRun) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.XlsxComment
-
- setTextAlign(Align) - Method in class com.hfg.util.collection.DataColumn
-
- setTextContent(String) - Method in class com.hfg.xml.XMLAttribute
-
- setTextDirection(WmlTextDirection) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setTextRotation(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
Set the text rotation (-90 to 90).
- setTextRotation(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- setTextRunProperties(WmlTextRunProperties) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlStructuredDocumentTagEndProperties
-
- setTextRuns(List<SsmlTextRun>) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setTextVerticalAlignment(SsmlTextVerticalAlignRunType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setThemeColor(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setThemeFill(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setThemeIndex(int) - Method in class com.hfg.xml.msofficexml.part.ThemePart
-
- setThemeShade(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setThickBottom(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
- setThickTop(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
- setThreeLetterCode(String) - Method in class com.hfg.bio.AminoAcid
-
- setTimePeriod(SsmlCfTimePeriod) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setTimestamp(PreparedStatement, int, Timestamp) - Static method in class com.hfg.sql.SQLUtil
-
A null-tolerant wrapper for PreparedStatement's setTimestamp().
- setTimeZone(TimeZone) - Method in class com.hfg.datetime.ThreadSafeDateFormat
-
- setTimezoneOffset(ZoneOffset) - Method in interface com.hfg.util.User
-
- setTimezoneOffset(ZoneOffset) - Method in class com.hfg.util.UserImpl
-
- Setting<V> - Interface in com.hfg.setting
-
Interface for an XML-serializable setting.
- SETTING - Static variable in class com.hfg.setting.SettingXML
-
- SettingImpl<V> - Class in com.hfg.setting
-
Base class for XML-serializable settings.
- SettingImpl(String) - Constructor for class com.hfg.setting.SettingImpl
-
- SettingImpl(String, V) - Constructor for class com.hfg.setting.SettingImpl
-
- SettingImpl(XMLTag) - Constructor for class com.hfg.setting.SettingImpl
-
- Settings - Class in com.hfg.setting
-
A collection of XML-serializable settings.
- Settings() - Constructor for class com.hfg.setting.Settings
-
- Settings(XMLTag) - Constructor for class com.hfg.setting.Settings
-
- SETTINGS - Static variable in class com.hfg.setting.SettingXML
-
- SETTINGS - Static variable in class com.hfg.xml.msofficexml.docx.part.WmlContentType
-
- SETTINGS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SETTINGS - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- SETTINGS_FILE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SettingsPart - Class in com.hfg.xml.msofficexml.part
-
Represents an Office Open XML settings part.
- SettingsPart(Docx) - Constructor for class com.hfg.xml.msofficexml.part.SettingsPart
-
- SettingXML - Class in com.hfg.setting
-
Tag and attribute names for XML-serializable settings.
- SettingXML() - Constructor for class com.hfg.setting.SettingXML
-
- setTitle(String) - Method in class com.hfg.bio.phylogeny.PhylogeneticTree
-
- setTitle(String) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- setTitle(String) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setTitle(String) - Method in class com.hfg.citation.Citation
-
- setTitle(String) - Method in class com.hfg.citation.Journal
-
- setTitle(String) - Method in class com.hfg.citation.PatentData
-
- setTitle(String) - Method in class com.hfg.html.Area
-
- setTitle(String) - Method in class com.hfg.html.Div
-
- setTitle(String) - Method in class com.hfg.html.Head
-
Sets the page title.
- setTitle(String) - Method in class com.hfg.html.IFrame
-
- setTitle(String) - Method in class com.hfg.html.Img
-
- setTitle(String) - Method in class com.hfg.html.InputButton
-
- setTitle(String) - Method in class com.hfg.html.InputText
-
- setTitle(String) - Method in class com.hfg.html.Label
-
- setTitle(String) - Method in class com.hfg.html.Link
-
- setTitle(String) - Method in class com.hfg.html.Option
-
- setTitle(String) - Method in class com.hfg.html.Span
-
- setTitle(String) - Method in class com.hfg.html.Td
-
- setTitle(String) - Method in class com.hfg.html.Th
-
- setTitle(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setTitle(String) - Method in class com.hfg.svg.SvgLine
-
- setTitle(String) - Method in class com.hfg.svg.SvgText
-
- setTitle(String) - Method in class com.hfg.util.collection.DataColumn
-
- setTitle(String) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlNonVisualDrawingProperties
-
- setTitle(String) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlDrawingObjNonVisualProperties
-
- setTitle(String) - Method in class com.hfg.xml.msofficexml.part.DocumentPropertiesPart
-
- setTitle(String) - Method in class com.hfg.xml.msofficexml.part.MediaPart
-
- setTitle(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- setTitlePattern(Pattern) - Method in class com.hfg.util.collection.DataColumn
-
Sets a pattern which can be used to match this column definition to column header from a spreadsheet.
- setTmpDirRoot(File) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- setTo(T) - Method in class com.hfg.network.Edge
-
- setTo(CellRef, GfxSize2D) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor
-
- setTooltip(String) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setTooltip(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setTop(GfxSize) - Method in class com.hfg.graphics.PageMargins
-
- setTop(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlEffectExtent
-
Specifies the additional extent to add to the top of the drawing.
- setTop(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageMargins
-
Specifies the distance (in twips or twentieths of a point) from the top edge of the page to the top edge of the text.
- setTop(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- setTop10Percent(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- setTopLeftCell(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the location of the top left visible cell in the bottom right pane (when in Left-to-Right mode).
- setTopLeftVisibleCell(CellRef) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Specifies the top left visible cell.
- setTotalGapLength(Integer) - Method in class com.hfg.bio.seq.BioSequenceImpl
-
- setTrackRevisions(boolean) - Method in class com.hfg.xml.msofficexml.part.SettingsPart
-
Specifies that applications shall track revisions made to the WordprocessingML
document.
- setTrailingResidue(Character) - Method in class com.hfg.bio.DigestFragment
-
- setTransactionIsolation(int) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setTransform(AffineTransform) - Method in class com.hfg.graphics.SvgGraphics2D
-
- setTransform(String) - Method in class com.hfg.svg.AbstractSvgNode
-
- setTransform(String) - Method in class com.hfg.svg.SvgGroup
-
- setTransform(String) - Method in class com.hfg.svg.SvgLine
-
- setTransform(String) - Method in class com.hfg.svg.SvgLink
-
- setTransform(String) - Method in interface com.hfg.svg.SvgNode
-
- setTransform(String) - Method in class com.hfg.svg.SvgPath
-
- setTransform(String) - Method in class com.hfg.svg.SvgPolygon
-
- setTransform(String) - Method in class com.hfg.svg.SvgPolyline
-
- setTransform(String) - Method in class com.hfg.svg.SvgRect
-
- setTransform(String) - Method in class com.hfg.svg.SvgSwitch
-
- setTransform(String) - Method in class com.hfg.svg.SvgSymbol
-
- setTransform(String) - Method in class com.hfg.svg.SvgText
-
- setTreeWidth(int) - Method in class com.hfg.bio.phylogeny.TreeDisplaySettings
-
- setType(CitationType) - Method in class com.hfg.citation.Citation
-
- setType(String) - Method in class com.hfg.html.ObjectTag
-
This attribute specifies the content type for the data specified by data.
- setType(MimeType) - Method in class com.hfg.html.Script
-
Sets the script type.
- setType(String) - Method in class com.hfg.html.Script
-
Sets the script type.
- setType(MimeType) - Method in class com.hfg.html.StyleTag
-
- setType(ExtFieldType) - Method in class com.hfg.javascript.ext.ExtModelField
-
- setType(ColorMatrixType) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setType(ComponentTransferType) - Method in class com.hfg.svg.filtereffect.SvgFeFuncA
-
- setType(ComponentTransferType) - Method in class com.hfg.svg.filtereffect.SvgFeFuncB
-
- setType(ComponentTransferType) - Method in class com.hfg.svg.filtereffect.SvgFeFuncG
-
- setType(ComponentTransferType) - Method in class com.hfg.svg.filtereffect.SvgFeFuncR
-
- setType(TurbulenceType) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setType(MimeType) - Method in class com.hfg.svg.SvgScript
-
Sets the script type.
- setType(String) - Method in class com.hfg.svg.SvgScript
-
Sets the script type.
- setType(String) - Method in class com.hfg.util.mime.MimeContentDisposition
-
- setType(RelationshipType) - Method in class com.hfg.xml.msofficexml.OfficeOpenXmlRelationship
-
- setType(SsmlDataValidationType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidation
-
- setType(XsdType) - Method in class com.hfg.xml.xsd.XsdElement
-
- setTypeCSS() - Method in class com.hfg.html.StyleTag
-
- setTypeMap(Map<String, Class<?>>) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- setUAC_Flag(UserAccountControlFlag) - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- setUAC_Flags(int) - Method in class com.hfg.ldap.ad.ActiveDirectoryUser
-
- setUI_Priority(Integer) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setUI_Priority(Integer) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setUI_Priority(Integer) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setUID(String) - Method in interface com.hfg.util.User
-
- setUID(String) - Method in class com.hfg.util.UserImpl
-
- setUnderline() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- setUnderline(SsmlUnderlineType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setUnderline(SsmlUnderlineType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- setUnhideWhenUsed() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlCharacterStyle
-
- setUnhideWhenUsed() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlParagraphStyle
-
- setUnhideWhenUsed() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyle
-
- setUniqueIdentifier(String) - Method in class com.hfg.citation.ncbi.MeshHeading
-
- setUniqueIdentifier(String) - Method in class com.hfg.citation.ncbi.MeshQualifier
-
- setUnless(String) - Method in class com.hfg.anttask.FileProperty
-
Only execute if a property of the given name does not exist in the current project
- setUnless(String) - Method in class com.hfg.anttask.GetWild
-
Only execute if a property of the given name does not exist in the current project.
- setupResponseForFileDownload(HttpServletResponse, MimeType, File) - Static method in class com.hfg.webapp.WebappUtil
-
- setURI(String) - Method in class com.hfg.citation.Citation
-
- setURI(String) - Method in class com.hfg.xml.XMLNamespace
-
- setURL(String) - Method in class com.hfg.citation.Citation
-
- setURL(String) - Method in class com.hfg.graphics.Track
-
- setURL(String) - Method in class com.hfg.graphics.Track2D
-
- setURL(CharSequence) - Method in class com.hfg.html.Link
-
- setUseDefaultGridColor(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not the consuming application should use the default grid
lines color (system dependent).
- setUseMap(String) - Method in class com.hfg.html.Img
-
- setUseMap(String) - Method in class com.hfg.html.ObjectTag
-
- setUser(String) - Method in class com.hfg.security.LoginCredentials
-
- setUserAgent(String) - Method in class com.hfg.anttask.GetWild
-
User-Agent HTTP header to send, Ant will specify a User-Agent header of "Apache Ant VERSION" unless overridden by this attribute.
- setUserAgentString(String) - Method in class com.hfg.util.io.HTTPRemoteFile
-
- setUserAgentString(String) - Method in class com.hfg.util.io.HTTPRemoteFileLister
-
Sets the user agent string to use during communication with the server.
- setUserContext(String) - Method in class com.hfg.ldap.LDAP_Config
-
- setUserContext(String) - Method in class com.hfg.ldap.LDAPClient
-
- setUserContext(LdapName) - Method in class com.hfg.ldap.LDAPClient
-
- setUserData(String, Object, UserDataHandler) - Method in class com.hfg.xml.XMLAttribute
-
- setUserFactory(LDAP_UserObjFactory<U>) - Method in class com.hfg.ldap.LDAPClient
-
- setUserObjectSetter(Method) - Method in class com.hfg.ldap.LDAP_UserField
-
- setUseTimestamp(boolean) - Method in class com.hfg.anttask.GetWild
-
If set to true, the remote file's timestamp will be compared
to the local file (if present) before downloading.
- setVAlign(VAlign) - Method in class com.hfg.html.Col
-
- setVAlign(VAlign) - Method in class com.hfg.html.Colgroup
-
- setVAlign(VAlign) - Method in class com.hfg.html.TBody
-
- setVAlign(VAlign) - Method in class com.hfg.html.Td
-
- setVAlign(VAlign) - Method in class com.hfg.html.TFoot
-
- setVAlign(VAlign) - Method in class com.hfg.html.Th
-
- setVAlign(VAlign) - Method in class com.hfg.html.THead
-
- setVAlign(VAlign) - Method in class com.hfg.html.Tr
-
- setValue(String) - Method in interface com.hfg.bio.seq.format.feature.FeatureQualifier
-
- setValue(String) - Method in class com.hfg.bio.seq.format.feature.FeatureQualifierImpl
-
- setValue(String) - Method in class com.hfg.css.CSSDeclaration
-
- setValue(String) - Method in class com.hfg.html.InputButton
-
- setValue(String) - Method in class com.hfg.html.InputCheckbox
-
- setValue(String) - Method in class com.hfg.html.InputFile
-
- setValue(String) - Method in class com.hfg.html.InputHidden
-
- setValue(String) - Method in class com.hfg.html.InputPassword
-
- setValue(String) - Method in class com.hfg.html.InputRadio
-
- setValue(String) - Method in class com.hfg.html.InputSubmit
-
- setValue(String) - Method in class com.hfg.html.InputText
-
- setValue(String) - Method in class com.hfg.html.Option
-
- setValue(String) - Method in class com.hfg.html.Param
-
- setValue(Map<String, Boolean>) - Method in class com.hfg.setting.BooleanMapSetting
-
- setValue(Boolean) - Method in class com.hfg.setting.BooleanSetting
-
- setValue(Object) - Method in class com.hfg.setting.ComplexSetting
-
- setValue(Map<String, Float>) - Method in class com.hfg.setting.FloatMapSetting
-
- setValue(Float) - Method in class com.hfg.setting.FloatSetting
-
- setValue(List<Integer>) - Method in class com.hfg.setting.IntListSetting
-
- setValue(Integer) - Method in class com.hfg.setting.IntSetting
-
- setValue(List<Long>) - Method in class com.hfg.setting.LongListSetting
-
- setValue(Long) - Method in class com.hfg.setting.LongSetting
-
- setValue(V) - Method in interface com.hfg.setting.Setting
-
- setValue(Short) - Method in class com.hfg.setting.ShortSetting
-
- setValue(List<String>) - Method in class com.hfg.setting.StringListSetting
-
- setValue(Map<String, String>) - Method in class com.hfg.setting.StringMapSetting
-
- setValue(String) - Method in class com.hfg.setting.StringSetting
-
- setValue(int[]) - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- setValue(String[]) - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- setValue(T) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setValue(Integer) - Method in class com.hfg.sql.table.field.DatabaseShortField
-
- setValue(V) - Method in class com.hfg.util.collection.MatrixCell
-
- setValue(String) - Method in class com.hfg.webapp.HfgCookie
-
- setValue(WmlLineBorderStyle) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlLineBorder
-
- setValue(WmlShading.ShadingValue) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading
-
- setValue(Object) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(SsmlTextRun) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(String) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(long) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(double) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- setValue(Object) - Method in class com.hfg.xml.XMLAttribute
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseBinaryField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseBooleanField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseCharField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseDateField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseDoubleField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseFloatField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseIntField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseLongField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseShortField
-
- setValueFromResultSet(ResultSet) - Method in class com.hfg.sql.table.field.DatabaseStringField
-
- setValueFromString(String) - Method in class com.hfg.setting.BooleanSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.ComplexSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.FloatSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.IntSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.ListSettingImpl
-
- setValueFromString(String) - Method in class com.hfg.setting.LongSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.MapSettingImpl
-
- setValueFromString(String) - Method in class com.hfg.setting.SettingImpl
-
- setValueFromString(String) - Method in class com.hfg.setting.ShortSetting
-
- setValueFromString(String) - Method in class com.hfg.setting.StringSetting
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseBinaryField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseBooleanField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseCharField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseDateField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseDoubleField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseFloatField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseIntField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseLongField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseShortField
-
- setValueFromString(String) - Method in class com.hfg.sql.table.field.DatabaseStringField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseArrayField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseBinaryField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseBooleanField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseCharField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseDateField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseDoubleField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseFloatField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseIntField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseLongField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseShortField
-
- setValueInPreparedStatement(PreparedStatement, int) - Method in class com.hfg.sql.table.field.DatabaseStringField
-
- setValues(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setValues(List<String>) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidation
-
- setVariableRowHeight(Boolean) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setVersion(String) - Method in class com.hfg.citation.Citation
-
- setVertAlign(SsmlTextVerticalAlignRunType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- setVertical(SsmlVerticalAlign) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- setVerticalAlignment(ExcelVerticalAlign) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setVerticalJustification(WmlVerticalJustification) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setVerticalLineEndIndex(int) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setVerticalLineStartIndex(int) - Method in class com.hfg.bio.phylogeny.PhyloNode
-
- setVerticalMerge(WmlVerticalMerge) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setViewBox(Rectangle) - Method in class com.hfg.svg.SVG
-
- setViewBox(Rectangle2D) - Method in class com.hfg.svg.SVG
-
- setViewBox(Rectangle) - Method in class com.hfg.svg.SvgMarker
-
- setViewType(SsmlSheetViewType) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the view type.
- setVolume(Integer) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setVolume(String) - Method in class com.hfg.citation.Citation
-
- setWebsiteTitle(String) - Method in class com.hfg.citation.Citation
-
- setWeight(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorder
-
Sets the border weight [0 (hairline) to 4 (thick)].
- setWGSAccession(String) - Method in class com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo
-
- setWidth(GfxSize) - Method in class com.hfg.graphics.units.GfxSize2D
-
- setWidth(String) - Method in class com.hfg.html.Applet
-
- setWidth(int) - Method in class com.hfg.html.Applet
-
- setWidth(String) - Method in class com.hfg.html.Col
-
- setWidth(String) - Method in class com.hfg.html.Colgroup
-
- setWidth(String) - Method in class com.hfg.html.Hr
-
- setWidth(int) - Method in class com.hfg.html.Hr
-
- setWidth(String) - Method in class com.hfg.html.IFrame
-
- setWidth(int) - Method in class com.hfg.html.IFrame
-
- setWidth(String) - Method in class com.hfg.html.Img
-
- setWidth(int) - Method in class com.hfg.html.Img
-
- setWidth(String) - Method in class com.hfg.html.ObjectTag
-
- setWidth(int) - Method in class com.hfg.html.ObjectTag
-
- setWidth(String) - Method in class com.hfg.html.Table
-
- setWidth(int) - Method in class com.hfg.html.Table
-
- setWidth(String) - Method in class com.hfg.html.Td
-
- setWidth(int) - Method in class com.hfg.html.Td
-
- setWidth(String) - Method in class com.hfg.html.Th
-
- setWidth(int) - Method in class com.hfg.html.Th
-
- setWidth(Integer) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setWidth(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setWidth(GfxSize) - Method in class com.hfg.math.HistogramSvgSettings
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setWidth(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setWidth(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setWidth(int) - Method in class com.hfg.svg.SVG
-
- setWidth(int) - Method in class com.hfg.svg.SvgFilter
-
- setWidth(String) - Method in class com.hfg.svg.SvgFilter
-
- setWidth(int) - Method in class com.hfg.svg.SvgForeignObject
-
- setWidth(GfxSize) - Method in class com.hfg.svg.SvgGenerationSettings
-
- setWidth(int) - Method in class com.hfg.svg.SvgMarker
-
- setWidth(String) - Method in class com.hfg.svg.SvgMarker
-
- setWidth(int) - Method in class com.hfg.svg.SvgRect
-
- setWidth(float) - Method in class com.hfg.svg.SvgRect
-
- setWidth(double) - Method in class com.hfg.svg.SvgRect
-
- setWidth(GfxSize) - Method in class com.hfg.util.collection.DataColumn
-
- setWidth(int) - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelColumn
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlExtents
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.DmlTransform
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.drawingml.line.DmlLine
-
Specifies the fill type that should be used for the shape.
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellMargin
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlInline
-
Specifies the width of the drawing.
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlPageSize
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
The width of a table.
- setWidth(float) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
Column width measured as the number of characters of the maximum digit width
of the numbers 0, 1, 2, …, 9 as rendered in the normal style's font.
- setWidth(GfxSize) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
Column width measured as the number of characters of the maximum digit width
of the numbers 0, 1, 2, …, 9 as rendered in the normal style's font.
- setWidthPct(float) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableCellProperties
-
- setWidthPct(int) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
The width of a table is expressed in fiftieth of a percent but to make things
simpler this method will take a regular percentage and perform the conversion for you.
- setWindowProtection(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not to enable window protection.
- setWordSize(Integer) - Method in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
From the BLAST documentation:
"BLAST is a heuristic that works by finding word-matches between the query and database sequences.
- setWorkbookViewId(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
- setWorkingDir(File) - Method in class com.hfg.util.Executor
-
Sets the working directory for command execution.
- setWrap(String) - Method in class com.hfg.html.Textarea
-
- setWrapOff() - Method in class com.hfg.html.Textarea
-
- setWrapText() - Method in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelStyle
-
- setWrapText(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- setX(GfxSize) - Method in class com.hfg.graphics.units.GfxPoint
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFePointLight
-
X location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
X location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setX(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setX(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setX(int) - Method in class com.hfg.svg.SvgFilter
-
- setX(String) - Method in class com.hfg.svg.SvgFilter
-
- setX(int) - Method in class com.hfg.svg.SvgForeignObject
-
- setX(int) - Method in class com.hfg.svg.SvgText
-
- setX(float) - Method in class com.hfg.svg.SvgText
-
- setX(int) - Method in class com.hfg.svg.SvgTSpan
-
- setX(float) - Method in class com.hfg.svg.SvgTSpan
-
- setXAxisEndValue(int) - Method in class com.hfg.graphics.Track
-
- setXAxisEndValue(int) - Method in class com.hfg.graphics.Track2D
-
- setXAxisStartValue(int) - Method in class com.hfg.graphics.Track
-
- setXAxisStartValue(int) - Method in class com.hfg.graphics.Track2D
-
- setXChannelSelector(ColorChannel) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
Indicates which channel from in2 to use to displace the pixels in in along the x-axis.
- setXCoordinate(Float) - Method in class com.hfg.chem.Atom
-
- setXlinkHref(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setXOffset(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setXOffset(int) - Method in class com.hfg.javascript.TooltipJS
-
- setXORMode(Color) - Method in class com.hfg.graphics.SvgGraphics2D
-
Not implemented.
- setXScalingFactor(double) - Method in class com.hfg.graphics.Gene2D
-
- setXSplit(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Specifies the horizontal split position - the right-most col index of the left pane.
- setXType(String) - Method in class com.hfg.javascript.ext.ExtGridCol
-
- setY(GfxSize) - Method in class com.hfg.graphics.units.GfxPoint
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeBlend
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeComposite
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeFlood
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeImage
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeMorphology
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeOffset
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFePointLight
-
Y location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
Y location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeTile
-
- setY(int) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setY(String) - Method in class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- setY(int) - Method in class com.hfg.svg.SvgFilter
-
- setY(String) - Method in class com.hfg.svg.SvgFilter
-
- setY(int) - Method in class com.hfg.svg.SvgForeignObject
-
- setY(int) - Method in class com.hfg.svg.SvgText
-
- setY(float) - Method in class com.hfg.svg.SvgText
-
- setY(int) - Method in class com.hfg.svg.SvgTSpan
-
- setY(float) - Method in class com.hfg.svg.SvgTSpan
-
- setYChannelSelector(ColorChannel) - Method in class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
Indicates which channel from in2 to use to displace the pixels in in along the y-axis.
- setYCoordinate(Float) - Method in class com.hfg.chem.Atom
-
- setYear(Integer) - Method in class com.hfg.bio.seq.format.genbank.GenBankReference
-
- setYear(Integer) - Method in class com.hfg.citation.Citation
-
- setYOffset(int) - Method in class com.hfg.javascript.HoverboardMaker
-
- setYOffset(int) - Method in class com.hfg.javascript.TooltipJS
-
- setYSplit(int) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
Specifies the vertical split position - the bottom-most row index of the top pane.
- setZ(int) - Method in class com.hfg.svg.filtereffect.SvgFePointLight
-
Z location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setZ(int) - Method in class com.hfg.svg.filtereffect.SvgFeSpotLight
-
Z location for the light source in the coordinate system established by attribute
primitiveUnits on the 'filter' element.
- setZCoordinate(Float) - Method in class com.hfg.chem.Atom
-
- setZeroHeight(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
- setZoomScale(Integer) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies the window zoom magnification for current view representing percent values.
- setZScore(Float) - Method in class com.hfg.bio.seq.alignment.AlignmentScoring
-
- setZScore(Float) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
- sex - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- SexAI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SfaNI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SfcI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SfiI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SfoI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SgrAI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SHADING - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SHADOW - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SHADOW - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHADOW_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- shadowedSquares - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- Shape - Class in com.hfg.graphics
-
Simple shape object.
- Shape(String) - Constructor for class com.hfg.graphics.Shape
-
- Shape - Class in com.hfg.html.attribute
-
Enum-like shape class
- SHAPE - Static variable in class com.hfg.html.HTML
-
- SHAPE - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SHAPE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- SHAPE_ADJUST_VALUES - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SHAPE_PROPS - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SHAPE_PROPS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- SHARED_STRING_TABLE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHARED_STRINGS - Static variable in class com.hfg.xml.msofficexml.xlsx.SsmlRelationshipType
-
- SHARED_STRINGS_FILE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SharedStringsPart - Class in com.hfg.xml.msofficexml.xlsx.part
-
Office Open XML format Excel shared string part.
- SharedStringsPart(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SharedStringsPart
-
- SharedStringsPart(Xlsx, BufferedInputStream) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SharedStringsPart
-
- sharksTeeth - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- shear(double, double) - Method in class com.hfg.graphics.SvgGraphics2D
-
- SHEET - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_DATA - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_FORMAT_PROPS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_ID_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_PROPS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_VIEW - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEET_VIEWS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHEETS - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- shorebirdTracks - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SHORT_NAME_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- ShortDate - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- ShortSetting - Class in com.hfg.setting
-
An XML-serializable short setting.
- ShortSetting(String) - Constructor for class com.hfg.setting.ShortSetting
-
- ShortSetting(String, Short) - Constructor for class com.hfg.setting.ShortSetting
-
- ShortSetting(ShortSetting) - Constructor for class com.hfg.setting.ShortSetting
-
Copy constructor.
- ShortSetting(XMLTag) - Constructor for class com.hfg.setting.ShortSetting
-
- ShortTime - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- SHOW_ALWAYS_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SHOW_FORMULAS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_GRID_LINES_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_INK_ANNOTATION_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_OUTLINE_SYMBOLS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_ROW_COL_HEADERS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_RULER_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_VALUE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_WHITE_SPACE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SHOW_ZEROS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- showRuler(boolean) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
Specifies whether or not the ruler is displayed in Page Layout View.
- showScoring(Collection<BioSequence>) - Method in class com.hfg.bio.seq.alignment.matrix.PSSM
-
- showScoring(Collection<Protein>, Protein) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAligner
-
- showScoring(BioSequence, PSSM) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAligner
-
- showScoring(Collection<? extends BioSequence>, PSSM) - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAligner
-
- showScoring() - Method in class com.hfg.bio.seq.alignment.PairwiseSeqAlignment
-
Method helpful for understanding the per-residue scoring breakdown.
- shuffle(int[]) - Static method in class com.hfg.util.ArrayUtil
-
Simple shuffle using the Fisher-Yates method.
- shuffle(float[]) - Static method in class com.hfg.util.ArrayUtil
-
Simple shuffle using the Fisher-Yates method.
- shuffle(char[]) - Static method in class com.hfg.util.ArrayUtil
-
Simple shuffle using the Fisher-Yates method.
- SI - Static variable in class com.hfg.units.MeasurementSystem
-
- SI_ScalingFactor - Class in com.hfg.units
-
Standard SI / Metric scaling factors.
- SI_System - Class in com.hfg.units
-
International System of Units.
- SI_System() - Constructor for class com.hfg.units.SI_System
-
- SIDECHAIN_KAS_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- SIENNA - Static variable in class com.hfg.html.attribute.HTMLColor
-
(160, 82, 45)
- sig_peptide - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- SIGNAL - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- signData(PrivateKey, byte[]) - Static method in class com.hfg.security.DSAUtil
-
- signData(PrivateKey, InputStream) - Static method in class com.hfg.security.DSAUtil
-
- SILICON - Static variable in class com.hfg.chem.Element
-
- SILLERO - Static variable in class com.hfg.bio.KaSet
-
Sillero A, Ribeiro JM.
- SILLERO - Static variable in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- SILLERO_ABRIDGED - Static variable in class com.hfg.bio.KaSet
-
Sillero A, Ribeiro JM.
- SILLERO_ABRIDGED - Static variable in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- SILVER - Static variable in class com.hfg.chem.Element
-
- SIMPLE_FIELD - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SIMPLE_TYPE - Static variable in class com.hfg.xml.xsd.XsdXML
-
- SimpleColorPalette - Class in com.hfg.graphics
-
A basic palette of 25 simple and distinct colors.
- SimpleColorPalette() - Constructor for class com.hfg.graphics.SimpleColorPalette
-
- SimpleProteinProperty<S extends SimpleProteinPropertyCalcSettings,T> - Class in com.hfg.bio.proteinproperty
-
Abstract base Class for single value protein properties.
- SimpleProteinProperty(String) - Constructor for class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- SimpleProteinPropertyCalcSettings - Class in com.hfg.bio.proteinproperty
-
Settings for performing physical property calculations on proteins.
- SimpleProteinPropertyCalcSettings() - Constructor for class com.hfg.bio.proteinproperty.SimpleProteinPropertyCalcSettings
-
- SimpleSampleStats - Class in com.hfg.math
-
Lightweight sample statistics.
- SimpleSampleStats() - Constructor for class com.hfg.math.SimpleSampleStats
-
- single - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlLineBorderStyle
-
- single - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlUnderlineType
-
- singleAccounting - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlUnderlineType
-
- singleLevel - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingDefinitionType
-
- singleQuote(Object) - Static method in class com.hfg.util.StringUtil
-
Returns the specified String surrounded by single quotes and escaping any internal single quotes.
- SingleValueProteinProperty<S extends SimpleProteinPropertyCalcSettings,T> - Interface in com.hfg.bio.proteinproperty
-
- SITE - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- size() - Method in class com.hfg.bio.AminoAcidSet
-
- size() - Method in class com.hfg.bio.phylogeny.DistanceMatrix
-
- size() - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- size() - Method in class com.hfg.bio.seq.AminoAcidComposition
-
- size - Static variable in class com.hfg.css.CSSProperty
-
- size() - Method in class com.hfg.graphics.NonlinearColorScale
-
- SIZE - Static variable in class com.hfg.html.HTML
-
- size() - Method in class com.hfg.math.ListCombinationIterator
-
- size() - Method in class com.hfg.setting.Settings
-
- size() - Method in class com.hfg.util.collection.AbstractSparseMatrix
-
- size() - Method in class com.hfg.util.collection.SymmetricMatrix
-
- SIZE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SIZE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- size() - Method in class com.hfg.xml.XMLAttributeMap
-
- SIZE_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SIZE_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- skip(long) - Method in class com.hfg.util.io.FlowMeterInputStream
-
- skippedEntity(String) - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- skippedEntity(String) - Method in class com.hfg.xml.XMLEmitter
-
- skipTo(long) - Method in class com.hfg.util.io.FlowMeterInputStream
-
- SKY - Static variable in class com.hfg.graphics.ContrastingColorPalette
-
( 94, 241, 242)
- SKY_BLUE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(135, 206, 235)
- skyrocket - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- slantDashDot - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- slantDashDot - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderStyle
-
- SLATE_BLUE - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- SLATE_BLUE - Static variable in class com.hfg.html.attribute.HTMLColor
-
(106, 90, 205)
- SLATE_GRAY - Static variable in class com.hfg.html.attribute.HTMLColor
-
(112, 128, 144)
- sleep(long) - Static method in class com.hfg.util.ThreadUtil
-
- SLIDE - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- SLIDE_MASTER - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- SlidingWindow(String, AminoAcidSet, DigestSettings) - Constructor for class com.hfg.bio.Protease.SlidingWindow
-
- SlidingWindow(String, AminoAcidSet, DigestSettings) - Constructor for class com.hfg.bio.seq.ProteinDigest.SlidingWindow
-
- slope - Static variable in class com.hfg.svg.SvgAttr
-
- SmaI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SMALL_CAPS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SMALL_FONT - Static variable in class com.hfg.css.CSS
-
Shortcut for 'font-size:small;'
- SMILES_ParseException - Exception in com.hfg.chem.format
-
Indicates an exception during the parsing of a SMILES string.
- SMILES_ParseException(String) - Constructor for exception com.hfg.chem.format.SMILES_ParseException
-
- SMILES_ParseException(String, Throwable) - Constructor for exception com.hfg.chem.format.SMILES_ParseException
-
- SMILES_ParseException(Throwable) - Constructor for exception com.hfg.chem.format.SMILES_ParseException
-
- SMILES_Parser - Class in com.hfg.chem.format
-
Class for parsing a Simplified Molecular-Input Line-Entry System (SMILES)
string into a Molecule.
- SMILES_Parser() - Constructor for class com.hfg.chem.format.SMILES_Parser
-
- SmlI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SN - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- SN - Static variable in class com.hfg.ldap.LDAP_Field
-
- SnaBI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SNOW - Static variable in class com.hfg.html.attribute.HTMLColor
-
(255, 250, 250)
- snowflakeFancy - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- snowflakes - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SODIUM - Static variable in class com.hfg.chem.Element
-
- SOFT_MASKING - Static variable in class com.hfg.bio.seq.alignment.blast.BLAST_Settings
-
- Solaris - Static variable in class com.hfg.util.OS
-
- SOLID - Static variable in class com.hfg.css.CSSBorderStyle
-
- SOLID_FILL - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- sombrero - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SORT_STATE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- sortAttributes(List<XMLAttribute>) - Method in class com.hfg.xml.XMLTag
-
- SortedList<T extends Comparable<T>> - Class in com.hfg.util.collection
-
List of Comparable objects that stays sorted.
- SortedList() - Constructor for class com.hfg.util.collection.SortedList
-
- SortedList(int) - Constructor for class com.hfg.util.collection.SortedList
-
- SortedList(Collection<T>) - Constructor for class com.hfg.util.collection.SortedList
-
- sortMapByValue(Map<K, V>) - Static method in class com.hfg.util.collection.CollectionUtil
-
- sortMapByValue(Map<K, V>, SortOrder) - Static method in class com.hfg.util.collection.CollectionUtil
-
- SOUND - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- source - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- SOURCE - Static variable in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- SourceAlpha - Static variable in class com.hfg.svg.filtereffect.FeInput
-
- SourceGraphic - Static variable in class com.hfg.svg.filtereffect.FeInput
-
- southwest - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- SPACE_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SPACING - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SPAN - Static variable in class com.hfg.html.HTML
-
- Span - Class in com.hfg.html
-
Represents a span (<span>) tag.
- Span() - Constructor for class com.hfg.html.Span
-
- Span(String) - Constructor for class com.hfg.html.Span
-
- Span(HTMLTag) - Constructor for class com.hfg.html.Span
-
- Span(XMLNode) - Constructor for class com.hfg.html.Span
-
- SPAN_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SPANS_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SparseMatrix<RK extends Comparable,CK extends Comparable,V extends Comparable> - Class in com.hfg.util.collection
-
A simple sparse matrix.
- SparseMatrix() - Constructor for class com.hfg.util.collection.SparseMatrix
-
- SparseMatrix(int, int) - Constructor for class com.hfg.util.collection.SparseMatrix
-
- speak - Static variable in class com.hfg.css.CSSProperty
-
- speak_as - Static variable in class com.hfg.css.CSSProperty
-
- speak_header - Static variable in class com.hfg.css.CSSProperty
-
- speak_numeral - Static variable in class com.hfg.css.CSSProperty
-
- speak_punctuation - Static variable in class com.hfg.css.CSSProperty
-
- SpecialCharacterEntities - Class in com.hfg.xml.parser
-
Lookup class for the character entities defined in XHTML1-special.ent
- SpecialCharacterEntities() - Constructor for class com.hfg.xml.parser.SpecialCharacterEntities
-
- SPECIES - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SPECIES_GROUP - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SPECIES_SCIENTIFIC_NAME_ATTR - Static variable in class com.hfg.bio.seq.format.EMBL
-
- SPECIES_SUBGROUP - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- specimen_voucher - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- specularExponent - Static variable in class com.hfg.svg.SvgAttr
-
- speech_rate - Static variable in class com.hfg.css.CSSProperty
-
- SpeI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SPELLING_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SphI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SPLIT_HORIZONTAL - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SPLIT_VERTICAL - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- splitBatchSQL(Reader) - Static method in class com.hfg.sql.SQLUtil
-
- SPREADSHEET_DRAWING_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- SPREADSHEET_SHARED_STRINGS - Static variable in class com.hfg.xml.msofficexml.xlsx.part.SsmlContentType
-
- SPREADSHEET_STYLES - Static variable in class com.hfg.xml.msofficexml.xlsx.part.SsmlContentType
-
- SpreadsheetML - Class in com.hfg.xml.msoffice2003.spreadsheetml
-
XML Names for use with Microsoft's Office 2003 SpreadsheetML.
- SpreadsheetML() - Constructor for class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SPREADSHEETML_2009_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPREADSHEETML_2009AC_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPREADSHEETML_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPREADSHEETML_REVISION1_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPREADSHEETML_REVISION2_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPREADSHEETML_REVISION3_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SPRING_GREEN - Static variable in class com.hfg.graphics.SimpleColorPalette
-
- SPRING_GREEN - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 0, 255, 127)
- SQ_LINE_CODE - Static variable in class com.hfg.bio.seq.format.EMBL
-
- sq_meter - Static variable in class com.hfg.units.AreaUnit
-
- SQLAndGroup - Class in com.hfg.sql
-
AND group of SQL where clauses.
- SQLAndGroup() - Constructor for class com.hfg.sql.SQLAndGroup
-
- SQLArray - Class in com.hfg.sql.table.field
-
Simple implementation of the Array interface that handles int[] or String[].
- SQLArray(Array) - Constructor for class com.hfg.sql.table.field.SQLArray
-
- SQLArray(int[]) - Constructor for class com.hfg.sql.table.field.SQLArray
-
- SQLArray(String[]) - Constructor for class com.hfg.sql.table.field.SQLArray
-
- SQLClause - Class in com.hfg.sql
-
SQL clause object.
- SQLClause(SQLClauseType, String) - Constructor for class com.hfg.sql.SQLClause
-
- SQLClauseType - Enum in com.hfg.sql
-
SQL clause types.
- SQLCmd - Class in com.hfg.sql
-
Base class for SQL commands.
- SQLCmd() - Constructor for class com.hfg.sql.SQLCmd
-
- SQLDelete - Class in com.hfg.sql
-
Container for building a SQL delete statement.
- SQLDelete() - Constructor for class com.hfg.sql.SQLDelete
-
- SQLDelete(DatabaseRow) - Constructor for class com.hfg.sql.SQLDelete
-
- SQLInsert - Class in com.hfg.sql
-
Container for building a SQL insert statement.
- SQLInsert() - Constructor for class com.hfg.sql.SQLInsert
-
- SQLJoinType - Class in com.hfg.sql
-
Standard SQL join types.
- SQLOrGroup - Class in com.hfg.sql
-
OR group of SQL where clauses.
- SQLOrGroup() - Constructor for class com.hfg.sql.SQLOrGroup
-
- SQLQuery - Class in com.hfg.sql
-
Container for building a SQL query.
- SQLQuery() - Constructor for class com.hfg.sql.SQLQuery
-
- SQLStatementOptions - Class in com.hfg.sql.jdbc
-
Options for a JDBC SQL statement.
- SQLStatementOptions() - Constructor for class com.hfg.sql.jdbc.SQLStatementOptions
-
- sqlString(Object) - Static method in class com.hfg.sql.SQLUtil
-
- sqlString(String) - Static method in class com.hfg.sql.SQLUtil
-
- sqlStringList(Collection<? extends Object>) - Static method in class com.hfg.sql.SQLUtil
-
- sqlStringWithDoubleQuotes(String) - Static method in class com.hfg.sql.SQLUtil
-
All single and double quotes internal to the string are doubled for escaping.
- SQLUpdate - Class in com.hfg.sql
-
Object for doing SQL updates.
- SQLUpdate() - Constructor for class com.hfg.sql.SQLUpdate
-
- SQLUpdate(DatabaseRow) - Constructor for class com.hfg.sql.SQLUpdate
-
- SQLUtil - Class in com.hfg.sql
-
SQL utility functions.
- SQLUtil() - Constructor for class com.hfg.sql.SQLUtil
-
- SQUARE - Static variable in class com.hfg.graphics.Shape
-
- SQUARE_REF_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SRC - Static variable in class com.hfg.html.HTML
-
- SRC_RECT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SrfI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- SRGB_COLOR - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- SS_NAMESPACE - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- SsDrawAbsoluteAnchor - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet shape (<xdr:absoluteAnchor>) tag.
- SsDrawAbsoluteAnchor(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawAbsoluteAnchor
-
- SsDrawDrawingAnchor - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Base class for Office Open XML spreadsheet drawing anchor tags.
- SsDrawDrawingAnchor(XMLName, Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawDrawingAnchor
-
- SsDrawNonVisualDrawingProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML non-visual drawing properties (<xdr:cNvPr>) tag.
- SsDrawNonVisualDrawingProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualDrawingProperties
-
- SsDrawNonVisualShapeDrawingProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML non-visual shape drawing properties (<xdr:nvSpPr>) tag.
- SsDrawNonVisualShapeDrawingProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualShapeDrawingProperties
-
- SsDrawNonVisualShapeProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML non-visual shape properties (<xdr:cNvSpPr>) tag.
- SsDrawNonVisualShapeProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawNonVisualShapeProperties
-
- SsDrawOneCellAnchor - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet shape (<xdr:oneCellAnchor>) tag.
- SsDrawOneCellAnchor(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawOneCellAnchor
-
- SsDrawShape - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet shape (<xdr:sp>) tag.
- SsDrawShape(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
- SsDrawShape(Xlsx, DmlShapeType) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShape
-
- SsDrawShapeProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
- SsDrawShapeProperties(OfficeOpenXmlDocument) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeProperties
-
- SsDrawShapeStyle - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet drawing shape style (<xdr:style>) tag.
- SsDrawShapeStyle(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawShapeStyle
-
- SsDrawTextBody - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet shape text body (<xdr:txBody>) tag.
- SsDrawTextBody(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTextBody
-
- SsDrawTwoCellAnchor - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
Represents an Office Open XML worksheet shape (<xdr:twoCellAnchor>) tag.
- SsDrawTwoCellAnchor(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor
-
- SsDrawTwoCellAnchor.EditMode - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
- SsDrawXML - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing
-
XML tag and attribute names for spreadsheetDrawing-related namespaces.
- SsDrawXML() - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- SsmlActivePane - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
- SsmlAlignment - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:alignment>) tag.
- SsmlAlignment(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- SsmlAlignment(SsmlXMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlAlignment
-
- SsmlBorder - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:border>) tag.
- SsmlBorder(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- SsmlBorder(SsmlXMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- SsmlBorder(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorder
-
- SsmlBorderStyle - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlBorderType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlCell - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet data cell (<ssml:c>) tag.
- SsmlCell(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- SsmlCell(SsmlWorksheet, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCell
-
- SsmlCellFormat - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:xf>) tag.
- SsmlCellFormat(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- SsmlCellFormat(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- SsmlCellFormat(Xlsx, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellFormat
-
- SsmlCellStyle - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:cellStyle>) tag.
- SsmlCellStyle(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- SsmlCellStyle(Xlsx, String) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- SsmlCellStyle(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlCellStyle
-
- SsmlCellType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet data cell type attribute.
- SsmlCfColorScaleRule - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML color scale conditional formatting rule (<ssml:cfRule>) tag.
- SsmlCfColorScaleRule(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfColorScaleRule
-
- SsmlCfColorScaleRule(SsmlWorksheet, XMLNamespace) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfColorScaleRule
-
- SsmlCfOperator - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Office Open XML conditional formatting operator.
- SsmlCfRule - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML conditional formatting rule (<ssml:cfRule>) tag.
- SsmlCfRule(SsmlWorksheet, SsmlCfRuleType) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- SsmlCfRule(SsmlWorksheet, SsmlCfRuleType, XMLNamespace) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRule
-
- SsmlCfRuleType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Office Open XML conditional formatting rule types.
- SsmlCfTimePeriod - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Office Open XML conditional formatting time period.
- SsmlCol - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet column (<ssml:col>) tag.
- SsmlCol(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCol
-
- SsmlColorScale - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML conditional formatting (<ssml:colorScale>) tag.
- SsmlColorScale(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- SsmlCommentsPart - Class in com.hfg.xml.msofficexml.xlsx.part
-
- SsmlCommentsPart(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SsmlCommentsPart
-
- SsmlConditionalFormatting - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sheet data (<ssml:conditionalFormatting>) tag.
- SsmlConditionalFormatting(SsmlWorksheet, CellRange) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlConditionalFormatting
-
- SsmlConditionalFormatting(SsmlWorksheet, CellRange, XMLNamespace) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlConditionalFormatting
-
- SsmlContentType - Class in com.hfg.xml.msofficexml.xlsx.part
-
Content types specific to OfficeOpenXML SpreadsheetML.
- SsmlContentTypesPart - Class in com.hfg.xml.msofficexml.xlsx.part
-
Deprecated.
- SsmlContentTypesPart(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SsmlContentTypesPart
-
Deprecated.
- SsmlDataBar - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML conditional formatting data bar (<ssml:dataBar>) tag.
- SsmlDataBar(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- SsmlDataBar(SsmlWorksheet, XMLNamespace) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataBar
-
- SsmlDataValidation - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML data validation (<ssml:dataValidation>) tag.
- SsmlDataValidation(Xlsx, CellRange) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidation
-
- SsmlDataValidationType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML Excel data validation type.
- SsmlDifferentialFormat - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML differential format (<ssml:dxf>) tag.
- SsmlDifferentialFormat(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- SsmlDifferentialFormat(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlDifferentialFormat
-
- SsmlDrawingPart - Class in com.hfg.xml.msofficexml.xlsx.part
-
Represents an Office Open XML drawing part.
- SsmlDrawingPart(WorksheetPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SsmlDrawingPart
-
- SsmlExtension - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML extension (<ssml:ext>) tag.
- SsmlExtension(SsmlWorksheet, XMLNamespace, SsmlExtension.URI_Type) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlExtension
-
- SsmlExtension.URI_Type - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
- SsmlFill - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:fill>) tag.
- SsmlFill(SsmlXMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- SsmlFill(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- SsmlFill(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFill
-
- SsmlFont - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:font>) tag.
- SsmlFont(SsmlXMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- SsmlFont(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- SsmlFont(Font, Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- SsmlFont(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- SsmlFont(Xlsx, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlFont
-
- SsmlHeaderFooter - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet's header and footer (<ssml:headerFooter>) tag.
- SsmlHeaderFooter(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlHeaderFooter
-
- SsmlHorizontalAlign - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlNumberFormat - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml (<ssml:numFmt>) tag.
- SsmlNumberFormat(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- SsmlNumberFormat(Xlsx, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlNumberFormat
-
- SsmlPageMargins - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet's page margins (<ssml:pageMargins>) tag.
- SsmlPageMargins(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPageMargins
-
- SsmlPane - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet pane (<ssml:pane>) tag.
- SsmlPane(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPane
-
- SsmlPaneState - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
- SsmlPatternType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlRelationshipType - Class in com.hfg.xml.msofficexml.xlsx
-
- SsmlRelationshipType(String) - Constructor for class com.hfg.xml.msofficexml.xlsx.SsmlRelationshipType
-
- SsmlRow - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet data row (<ssml:r>) tag.
- SsmlRow(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- SsmlRow(SsmlWorksheet, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlRow
-
- SsmlSheetData - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sheet data (<ssml:sheetData>) tag.
- SsmlSheetData(SsmlWorksheet) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- SsmlSheetData(SsmlWorksheet, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetData
-
- SsmlSheetFormatProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sheet format properties (<ssml:sheetFormatPr>) tag.
- SsmlSheetFormatProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetFormatProperties
-
- SsmlSheetView - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sheet view (<ssml:sheetView>) tag.
- SsmlSheetView(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetView
-
- SsmlSheetViewType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
- SsmlSortState - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sort state (<ssml:sortState>) tag.
- SsmlSortState(Xlsx, CellRange) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSortState
-
- SsmlStyleFormat - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Represents an Office Open XML spreadsheetml style format (<ssml:xf>) tag.
- SsmlStyleFormat(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- SsmlStyleFormat(StylesPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlStyleFormat
-
- SsmlTable - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML table definition (<ssml:table>) tag.
- SsmlTable(TablePart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTable
-
- SsmlTextRun - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML rich text run (<ssml:r>) tag.
- SsmlTextRun(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRun
-
- SsmlTextRun(Xlsx, String) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRun
-
- SsmlTextRunProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML rich text run properties (<ssml:rPr>) tag.
- SsmlTextRunProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlTextRunProperties
-
- SsmlTextVerticalAlignRunType - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlThemePart - Class in com.hfg.xml.msofficexml.xlsx.part
-
Represents an Office Open XML theme part.
- SsmlThemePart(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.part.SsmlThemePart
-
- SsmlUnderlineType - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Enumeration of underline types for Office Open XML spreadsheets.
- SsmlVerticalAlign - Enum in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
- SsmlWorkbook - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML workbook (<s:workbook>) tag.
- SsmlWorkbook(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbook
-
- SsmlWorkbook(Xlsx, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbook
-
- SsmlWorkbookProperties - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML workbook properties (<ssml:workbookPr>) tag.
- SsmlWorkbookProperties(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- SsmlWorkbookProperties(Xlsx, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookProperties
-
- SsmlWorkbookView - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML workbook view (<ssml:workbookView>) tag.
- SsmlWorkbookView(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorkbookView
-
- SsmlWorksheet - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML sheet (<ssml:worksheet>) tag.
- SsmlWorksheet(WorksheetPart) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- SsmlWorksheet(WorksheetPart, String, XMLTag) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlWorksheet
-
- SsmlXML - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Office Open XML SpreadsheetML tag and attribute name definitions.
- SsmlXML() - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- SsmlXMLTag - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml
-
Represents an Office Open XML worksheet's base tag.
- SsmlXMLTag(XMLName, Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXMLTag
-
- sSnCnPattern - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonomyDataSourceImpl
-
- SspI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- sSQLLoggingLevel - Static variable in class com.hfg.sql.SQLUtil
-
- sSQLLoggingLevel - Static variable in class com.hfg.xml.msofficexml.OfficeOpenXmlDocument
-
- sSQLLoggingLevel - Static variable in class com.hfg.xml.msofficexml.OfficeOpenXMLTag
-
- StackTraceElementFilter - Class in com.hfg.util
-
- StackTraceElementFilter() - Constructor for class com.hfg.util.StackTraceElementFilter
-
- StackTraceUtil - Class in com.hfg.util
-
Utility functions for manipulating StackTrace information.
- StackTraceUtil() - Constructor for class com.hfg.util.StackTraceUtil
-
- STANDARD - Static variable in class com.hfg.bio.AminoAcidSet
-
Contains both upper and lowercase standard mappings.
- STANDARD - Static variable in class com.hfg.bio.seq.format.EMBL_DataClass
-
Standard STD
- STANDARD - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- Standard - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.ExcelNumberFormat
-
- STANDARD_LC - Static variable in class com.hfg.bio.AminoAcidSet
-
- standard_name - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- STANDARD_UC - Static variable in class com.hfg.bio.AminoAcidSet
-
- StandardAAGroupingScheme - Class in com.hfg.bio
-
Standard grouping of amino acids.
- StandardNormalDistribution - Class in com.hfg.math
-
For calculations related to standard normal distributions.
- StandardNormalDistribution() - Constructor for class com.hfg.math.StandardNormalDistribution
-
- StandardTranslationTable - Class in com.hfg.bio.seq.translation
-
Standard translation table for mapping codons to amino acids.
- STANDBY - Static variable in class com.hfg.html.HTML
-
- STAR - Static variable in class com.hfg.graphics.Shape
-
- stars - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- stars3d - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- starsBlack - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- starsShadowed - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- starsTop - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- start() - Method in class com.hfg.util.BYPStringMatch
-
- start() - Method in class com.hfg.util.BYPStringMatcher
-
- start() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- START - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabStyle
-
All following and preceding text is aligned against the leading edge.
- START - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- START - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- START_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- startAsync() - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- startAsync(ServletRequest, ServletResponse) - Method in class com.hfg.webapp.HfgHttpServletRequest
-
- startBookmark() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraph
-
- startBookmark(WmlBookmark) - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlParagraph
-
- startCDATA() - Method in class com.hfg.xml.XMLEmitter
-
- startDocument() - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- startDocument() - Method in class com.hfg.xml.parser.XMLRepeatContentHandler
-
- startDocument() - Method in class com.hfg.xml.parser.XMLTagSAXBroadcaster
-
- startDocument() - Method in interface com.hfg.xml.parser.XMLTagSAXListener
-
- startDocument() - Method in class com.hfg.xml.XMLEmitter
-
- startDTD(String, String, String) - Method in class com.hfg.xml.XMLEmitter
-
- startElement(String, String, String, Attributes) - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- startElement(String, String, String, Attributes) - Method in class com.hfg.xml.parser.XMLRepeatContentHandler
-
- startElement(String, String, String, Attributes) - Method in class com.hfg.xml.parser.XMLTagSAXBroadcaster
-
Determines what happens when the sax parser event 'startElement()' is
triggered.
- startElement(String, String, String, Attributes) - Method in class com.hfg.xml.XMLEmitter
-
- startEntity(String) - Method in class com.hfg.xml.XMLEmitter
-
- startPrefixMapping(String, String) - Method in class com.hfg.xml.parser.AbstractContentHandler
-
- startsWith(String) - Method in class com.hfg.util.StringBuilderPlus
-
- STATE - Static variable in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- STATE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STATUS_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- STD_DEV_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- stdDeviation - Static variable in class com.hfg.svg.SvgAttr
-
- STEEL_BLUE - Static variable in class com.hfg.html.attribute.HTMLColor
-
( 70, 130, 180)
- stem_loop - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- stitchTiles - Static variable in class com.hfg.svg.SvgAttr
-
- StmtJoinMethod - Enum in com.hfg.util
-
Enumeration of methods for joining logical statements.
- stone - Static variable in class com.hfg.units.MassUnit
-
- STOP - Static variable in class com.hfg.bio.AminoAcid
-
- stop() - Method in class com.hfg.util.scheduler.ScheduledJob
-
- stop() - Method in class com.hfg.util.scheduler.Scheduler
-
- STOP_IF_TRUE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- strain - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- STRAIN - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- STRAND - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- Strand - Class in com.hfg.bio
-
Enum-like sequence strand class
- STRAND_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- STRAND_TAG - Static variable in class com.hfg.bio.HfgBioXML
-
- streamAsZipFile(OutputStream, String, Collection<FileBytes>) - Static method in class com.hfg.util.io.FileBytes
-
- StreamUtil - Class in com.hfg.util.io
-
Stream utility functions.
- StreamUtil() - Constructor for class com.hfg.util.io.StreamUtil
-
- stress - Static variable in class com.hfg.css.CSSProperty
-
- STRETCH - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- STRICT_PROPERTY - Static variable in class com.hfg.xml.parser.SaxyParser
-
Parser property to enable strict parsing mode.
- STRIKE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STRIKE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STRING - Static variable in class com.hfg.javascript.ext.ExtFieldType
-
- STRING_ITEM - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- string_set - Static variable in class com.hfg.css.CSSProperty
-
- StringBuilderPlus - Class in com.hfg.util
-
A StringBuilder with extra functionality [delimtedAppend(), printf(), appendln(),
replaceAll(), and carriage return support].
- StringBuilderPlus() - Constructor for class com.hfg.util.StringBuilderPlus
-
- StringBuilderPlus(int) - Constructor for class com.hfg.util.StringBuilderPlus
-
- StringBuilderPlus(CharSequence) - Constructor for class com.hfg.util.StringBuilderPlus
-
- StringListSetting - Class in com.hfg.setting
-
An XML-serializable string list setting.
- StringListSetting(String) - Constructor for class com.hfg.setting.StringListSetting
-
- StringListSetting(String, Collection<String>) - Constructor for class com.hfg.setting.StringListSetting
-
- StringListSetting(String, EnumSet) - Constructor for class com.hfg.setting.StringListSetting
-
- StringListSetting(StringListSetting) - Constructor for class com.hfg.setting.StringListSetting
-
Copy constructor.
- StringListSetting(XMLTag) - Constructor for class com.hfg.setting.StringListSetting
-
- StringMapSetting - Class in com.hfg.setting
-
An XML-serializable string map setting.
- StringMapSetting(String) - Constructor for class com.hfg.setting.StringMapSetting
-
- StringMapSetting(String, Map<String, String>) - Constructor for class com.hfg.setting.StringMapSetting
-
- StringMapSetting(StringMapSetting) - Constructor for class com.hfg.setting.StringMapSetting
-
Copy constructor.
- StringMapSetting(XMLTag) - Constructor for class com.hfg.setting.StringMapSetting
-
- StringSetting - Class in com.hfg.setting
-
An XML-serializable string setting.
- StringSetting(String) - Constructor for class com.hfg.setting.StringSetting
-
- StringSetting(String, String) - Constructor for class com.hfg.setting.StringSetting
-
- StringSetting(StringSetting) - Constructor for class com.hfg.setting.StringSetting
-
Copy constructor.
- StringSetting(XMLTag) - Constructor for class com.hfg.setting.StringSetting
-
- StringUtil - Class in com.hfg.util
-
General String utility functions.
- StringUtil() - Constructor for class com.hfg.util.StringUtil
-
- stringValue() - Method in interface com.hfg.util.Value
-
- stringValue() - Method in class com.hfg.util.ValueImpl
-
- stripHTMLTags(String) - Static method in class com.hfg.util.StringUtil
-
- stripLineComments(CharSequence) - Static method in class com.hfg.javascript.JSONUtil
-
This function strips any line comments from the JSON since they are not valid JSON syntax.
- stroke - Static variable in class com.hfg.svg.SvgAttr
-
- strokeOpacity - Static variable in class com.hfg.svg.SvgAttr
-
- StrokePaint - Static variable in class com.hfg.svg.filtereffect.FeInput
-
- strokeWidth - Static variable in class com.hfg.svg.SvgAttr
-
- STRONG - Static variable in class com.hfg.html.HTML
-
- STRONTIUM - Static variable in class com.hfg.chem.Element
-
- STRUCTURED_DOC_TAG - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STRUCTURED_DOC_TAG_CONTENT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STRUCTURED_DOC_TAG_END_PROPS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STRUCTURED_DOC_TAG_PROPS - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STRYER_1995 - Static variable in class com.hfg.bio.KaSet
-
Biochemistry by Lubert Stryer, 1995
- STRYER_1995 - Static variable in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- STS - Static variable in class com.hfg.bio.seq.format.EMBL_DataClass
-
Sequence Tagged Site
- STS - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- STS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
STS sequences (Sequence Tagged Sites)
- StuI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- StyI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- STYLE - Static variable in class com.hfg.css.CSS
-
- STYLE - Static variable in class com.hfg.html.HTML
-
- style - Static variable in class com.hfg.svg.SVG
-
- style - Static variable in class com.hfg.svg.SvgAttr
-
- STYLE - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- STYLE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STYLE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawXML
-
- STYLE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STYLE_COMPACT - Static variable in class com.hfg.xml.XMLEmitter
-
- STYLE_FORMAT_ID_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STYLE_ID_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- STYLE_ID_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STYLE_IDX_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STYLE_INDENTED - Static variable in class com.hfg.xml.XMLEmitter
-
- STYLES - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- STYLES - Static variable in class com.hfg.xml.msofficexml.docx.part.WmlContentType
-
- STYLES - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STYLES - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- STYLES_FILE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- STYLES_FILE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- STYLESHEET - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- STYLESHEET - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- StylesPart - Class in com.hfg.xml.msofficexml.docx.part
-
Office Open XML document styles part.
- StylesPart(Docx) - Constructor for class com.hfg.xml.msofficexml.docx.part.StylesPart
-
- StylesPart - Class in com.hfg.xml.msofficexml.xlsx.spreadsheetml.style
-
Styles part specific to OfficeOpenXML SpreadsheetML.
- StylesPart(Xlsx) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
This constructor should only be used by the Xlsx object.
- StylesPart(Xlsx, BufferedInputStream) - Constructor for class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.StylesPart
-
- StyleTag - Class in com.hfg.html
-
Represents an HTML style (<style>) tag.
- StyleTag() - Constructor for class com.hfg.html.StyleTag
-
- StyleTag(String) - Constructor for class com.hfg.html.StyleTag
-
- StyleTag(XMLNode) - Constructor for class com.hfg.html.StyleTag
-
- SUB - Static variable in class com.hfg.html.attribute.VAlign
-
- sub_clone - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- SUB_DOC - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SUB_DOCUMENT - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- sub_species - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- sub_strain - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- SUBCLASS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBCOHORT - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBFAMILY - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBGENUS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBJECT - Static variable in class com.hfg.bio.HfgBioXML
-
- SUBJECT - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- SUBKINGDOM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- submit(Runnable) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- submit(Runnable, Priority) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- submit(Runnable, T) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- submit(Runnable, T, Priority) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- submit(Callable<T>) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- submit(Callable<T>, Priority) - Method in class com.hfg.util.PrioritizedThreadPoolExecutor
-
- SUBORDER - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBPHYLUM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUBSECTION - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- subSequence(int, int) - Method in class com.hfg.util.StringBuilderPlus
-
- subset(Collection<String>) - Method in class com.hfg.bio.seq.alignment.MultipleSequenceAlignment
-
- SUBSPECIES - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SubstitutionMatrix - Class in com.hfg.bio.seq.alignment.matrix
-
Substitution matrix for use with pairwise sequence alignments.
- SubstitutionMatrix(String, BufferedReader) - Constructor for class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
Constructor using a BufferedReader.
- substring(int) - Method in class com.hfg.util.StringBuilderPlus
-
- substring(int, int) - Method in class com.hfg.util.StringBuilderPlus
-
- subtract(AminoAcidSet) - Method in class com.hfg.bio.AminoAcidSet
-
- subtract(SeqLocation) - Method in class com.hfg.bio.seq.SeqLocation
-
- subtract(Quantity) - Method in class com.hfg.chem.solution.AqueousSolution
-
- subtract(GfxSize) - Method in interface com.hfg.graphics.units.GfxSize
-
- subtract(GfxSize) - Method in class com.hfg.graphics.units.GfxSizeImpl
-
- subtract(Range<T>) - Method in class com.hfg.math.Range
-
- subtract(Quantity) - Method in class com.hfg.units.Quantity
-
- SUBTRIBE - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SubUnit - Class in com.hfg.units
-
Container for compound units.
- SubUnit(Unit, SI_ScalingFactor) - Constructor for class com.hfg.units.SubUnit
-
- SubUnit(Unit, SI_ScalingFactor, Integer) - Constructor for class com.hfg.units.SubUnit
-
- SubUnit(Unit, Integer) - Constructor for class com.hfg.units.SubUnit
-
- SubUnit(Unit) - Constructor for class com.hfg.units.SubUnit
-
- SUBVARIETY - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SULFUR - Static variable in class com.hfg.chem.Element
-
- sum(List<? extends Number>) - Static method in class com.hfg.math.NumUtil
-
- sum(Collection<? extends Number>) - Static method in class com.hfg.util.collection.CollectionUtil
-
Returns the sum of the specified Collection.
- sun - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- SUPER - Static variable in class com.hfg.css.CSS
-
Shortcut for 'vertical-align:super;'
- SUPER - Static variable in class com.hfg.html.attribute.VAlign
-
- SUPERCLASS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUPERFAMILY - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUPERKINGDOM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUPERORDER - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- SUPERPHYLUM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- superUnion(Collection<Range<T>>) - Static method in class com.hfg.math.Range
-
Returns a single Range that encompasses the collection of input ranges and ignores internal gaps.
- superUnion(Range<T>) - Method in class com.hfg.math.Range
-
Returns a single Range that encompasses both input ranges and ignores internal gaps.
- SUPPRESSED - Static variable in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus
-
- surfaceScale - Static variable in class com.hfg.svg.SvgAttr
-
- SUS_SCROFA - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Pig
- SVG - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) tag.
- SVG() - Constructor for class com.hfg.svg.SVG
-
- SVG(XMLNode) - Constructor for class com.hfg.svg.SVG
-
- svg - Static variable in class com.hfg.svg.SVG
-
- SVG - Static variable in class com.hfg.xml.XMLNamespace
-
- SVG_1_1 - Static variable in class com.hfg.xml.Doctype
-
- SvgAttr - Class in com.hfg.svg
-
Attribute name constants for use with SVG (Scalable Vector Graphics) tags.
- SvgAttr() - Constructor for class com.hfg.svg.SvgAttr
-
- SvgAttr.Value - Class in com.hfg.svg
-
- SvgCircle - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'circle' tag.
- SvgCircle() - Constructor for class com.hfg.svg.SvgCircle
-
- SvgCircle(Point2D, int) - Constructor for class com.hfg.svg.SvgCircle
-
- SvgCircle(XMLTag) - Constructor for class com.hfg.svg.SvgCircle
-
- SvgDefs - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'defs' tag.
- SvgDefs() - Constructor for class com.hfg.svg.SvgDefs
-
- SvgDefs(XMLTag) - Constructor for class com.hfg.svg.SvgDefs
-
- SvgDesc - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'desc' tag.
- SvgDesc() - Constructor for class com.hfg.svg.SvgDesc
-
- SvgDesc(CharSequence) - Constructor for class com.hfg.svg.SvgDesc
-
- SvgDesc(XMLTag) - Constructor for class com.hfg.svg.SvgDesc
-
- SvgDoc - Class in com.hfg.svg
-
Container for an SVG (Scalable Vector Graphics) document.
- SvgDoc() - Constructor for class com.hfg.svg.SvgDoc
-
- SvgDoc(SVG) - Constructor for class com.hfg.svg.SvgDoc
-
- SvgDoc(File) - Constructor for class com.hfg.svg.SvgDoc
-
- SvgDoc(BufferedInputStream) - Constructor for class com.hfg.svg.SvgDoc
-
- SvgEllipse - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'ellipse' tag.
- SvgEllipse() - Constructor for class com.hfg.svg.SvgEllipse
-
- SvgEllipse(XMLTag) - Constructor for class com.hfg.svg.SvgEllipse
-
- SvgException - Exception in com.hfg.svg
-
Indicates an exception caused during SVG processing.
- SvgException(String) - Constructor for exception com.hfg.svg.SvgException
-
- SvgException(String, Throwable) - Constructor for exception com.hfg.svg.SvgException
-
- SvgException(Throwable) - Constructor for exception com.hfg.svg.SvgException
-
- SvgFeBlend - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feBlend' filter effect tag.
- SvgFeBlend() - Constructor for class com.hfg.svg.filtereffect.SvgFeBlend
-
- SvgFeBlend(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeBlend
-
- SvgFeColorMatrix - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feColorMatrix' filter effect tag.
- SvgFeColorMatrix() - Constructor for class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- SvgFeColorMatrix(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeColorMatrix
-
- SvgFeComponentTransfer - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feComponentTransfer' filter effect tag.
- SvgFeComponentTransfer() - Constructor for class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- SvgFeComponentTransfer(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeComponentTransfer
-
- SvgFeComposite - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feComposite' filter effect tag.
- SvgFeComposite() - Constructor for class com.hfg.svg.filtereffect.SvgFeComposite
-
- SvgFeComposite(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeComposite
-
- SvgFeConvolveMatrix - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feConvolveMatrix' filter effect tag.
- SvgFeConvolveMatrix() - Constructor for class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- SvgFeConvolveMatrix(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeConvolveMatrix
-
- SvgFeDiffuseLighting - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feDiffuseLighting' filter effect tag.
- SvgFeDiffuseLighting() - Constructor for class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- SvgFeDiffuseLighting(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeDiffuseLighting
-
- SvgFeDisplacementMap - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feDisplacementMap' filter effect tag.
- SvgFeDisplacementMap() - Constructor for class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- SvgFeDisplacementMap(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeDisplacementMap
-
- SvgFeDistantLight - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feDistantLight' filter effect tag.
- SvgFeDistantLight() - Constructor for class com.hfg.svg.filtereffect.SvgFeDistantLight
-
- SvgFeDistantLight(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeDistantLight
-
- SvgFeFlood - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feFlood' filter effect tag.
- SvgFeFlood() - Constructor for class com.hfg.svg.filtereffect.SvgFeFlood
-
- SvgFeFlood(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeFlood
-
- SvgFeFunc - Class in com.hfg.svg.filtereffect
-
Abstract base class for SVG (Scalable Vector Graphics) 'feFunc[RGBA]' filter effect tags."
- SvgFeFunc(String) - Constructor for class com.hfg.svg.filtereffect.SvgFeFunc
-
- SvgFeFuncA - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feFuncA' filter effect tag.
- SvgFeFuncA() - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncA
-
- SvgFeFuncA(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncA
-
- SvgFeFuncB - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feFuncB' filter effect tag.
- SvgFeFuncB() - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncB
-
- SvgFeFuncB(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncB
-
- SvgFeFuncG - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feFuncG' filter effect tag.
- SvgFeFuncG() - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncG
-
- SvgFeFuncG(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncG
-
- SvgFeFuncR - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feFuncR' filter effect tag.
- SvgFeFuncR() - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncR
-
- SvgFeFuncR(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeFuncR
-
- SvgFeGaussianBlur - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feGaussianBlur' filter effect tag.
- SvgFeGaussianBlur() - Constructor for class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- SvgFeGaussianBlur(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeGaussianBlur
-
- SvgFeImage - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feImage' filter effect tag.
- SvgFeImage() - Constructor for class com.hfg.svg.filtereffect.SvgFeImage
-
- SvgFeImage(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeImage
-
- SvgFeMerge - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feMerge' filter effect tag.
- SvgFeMerge() - Constructor for class com.hfg.svg.filtereffect.SvgFeMerge
-
- SvgFeMerge(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeMerge
-
- SvgFeMergeNode - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feMergeNode' filter effect tag.
- SvgFeMergeNode() - Constructor for class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- SvgFeMergeNode(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeMergeNode
-
- SvgFeMorphology - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feMorphology' filter effect tag.
- SvgFeMorphology() - Constructor for class com.hfg.svg.filtereffect.SvgFeMorphology
-
- SvgFeMorphology(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeMorphology
-
- SvgFeOffset - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feOffset' filter effect tag.
- SvgFeOffset() - Constructor for class com.hfg.svg.filtereffect.SvgFeOffset
-
- SvgFeOffset(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeOffset
-
- SvgFePointLight - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'fePointLight' filter effect tag.
- SvgFePointLight() - Constructor for class com.hfg.svg.filtereffect.SvgFePointLight
-
- SvgFePointLight(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFePointLight
-
- SvgFeSpecularLighting - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feSpecularLighting' filter effect tag.
- SvgFeSpecularLighting() - Constructor for class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- SvgFeSpecularLighting(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeSpecularLighting
-
- SvgFeSpotLight - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feSpotLight' filter effect tag.
- SvgFeSpotLight() - Constructor for class com.hfg.svg.filtereffect.SvgFeSpotLight
-
- SvgFeSpotLight(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeSpotLight
-
- SvgFeTile - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feTile' filter effect tag.
- SvgFeTile() - Constructor for class com.hfg.svg.filtereffect.SvgFeTile
-
- SvgFeTile(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeTile
-
- SvgFeTurbulence - Class in com.hfg.svg.filtereffect
-
Object representation of an SVG (Scalable Vector Graphics) 'feTurbulence' filter effect tag.
- SvgFeTurbulence() - Constructor for class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- SvgFeTurbulence(XMLTag) - Constructor for class com.hfg.svg.filtereffect.SvgFeTurbulence
-
- SvgFilter - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'filter' tag.
- SvgFilter() - Constructor for class com.hfg.svg.SvgFilter
-
- SvgFilter(XMLTag) - Constructor for class com.hfg.svg.SvgFilter
-
- SvgForeignObject - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'foreignObject' tag.
- SvgForeignObject() - Constructor for class com.hfg.svg.SvgForeignObject
-
- SvgForeignObject(XMLTag) - Constructor for class com.hfg.svg.SvgForeignObject
-
- SvgGenerationSettings - Class in com.hfg.svg
-
General settings for use with generating SVGs.
- SvgGenerationSettings() - Constructor for class com.hfg.svg.SvgGenerationSettings
-
- SvgGraphics2D - Class in com.hfg.graphics
-
Simple Graphics2D class which can be used to generate SVG.
- SvgGraphics2D() - Constructor for class com.hfg.graphics.SvgGraphics2D
-
- SvgGroup - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'g' tag.
- SvgGroup() - Constructor for class com.hfg.svg.SvgGroup
-
- SvgGroup(XMLTag) - Constructor for class com.hfg.svg.SvgGroup
-
- SvgLightSource - Class in com.hfg.svg.filtereffect
-
An abstract light source.
- SvgLightSource(String) - Constructor for class com.hfg.svg.filtereffect.SvgLightSource
-
- SvgLine - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) line tag.
- SvgLine(Point2D, Point2D) - Constructor for class com.hfg.svg.SvgLine
-
- SvgLine(Point, Point) - Constructor for class com.hfg.svg.SvgLine
-
- SvgLine(XMLTag) - Constructor for class com.hfg.svg.SvgLine
-
- SvgLink - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'g' tag.
- SvgLink(CharSequence) - Constructor for class com.hfg.svg.SvgLink
-
- SvgLink(XMLTag) - Constructor for class com.hfg.svg.SvgLink
-
- SvgMarker - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'marker' tag.
- SvgMarker() - Constructor for class com.hfg.svg.SvgMarker
-
- SvgMarker(XMLTag) - Constructor for class com.hfg.svg.SvgMarker
-
- SvgMetadata - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'metadata' tag.
- SvgMetadata() - Constructor for class com.hfg.svg.SvgMetadata
-
- SvgMetadata(XMLTag) - Constructor for class com.hfg.svg.SvgMetadata
-
- SvgNode - Interface in com.hfg.svg
-
Interface for SVG-specific methods.
- SvgPath - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) path tag.
- SvgPath() - Constructor for class com.hfg.svg.SvgPath
-
- SvgPath(String) - Constructor for class com.hfg.svg.SvgPath
-
- SvgPath(XMLTag) - Constructor for class com.hfg.svg.SvgPath
-
- SvgPathClosePathCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path closePath ('z') command.
- SvgPathClosePathCmd() - Constructor for class com.hfg.svg.path.SvgPathClosePathCmd
-
- SvgPathCmd - Class in com.hfg.svg.path
-
Base representation of an SVG (Scalable Vector Graphics) path command.
- SvgPathCmd(char) - Constructor for class com.hfg.svg.path.SvgPathCmd
-
- SvgPathCurveToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path curveTo ('C' or 'c') command.
- SvgPathCurveToCmd() - Constructor for class com.hfg.svg.path.SvgPathCurveToCmd
-
- SvgPathCurveToCmd(char) - Constructor for class com.hfg.svg.path.SvgPathCurveToCmd
-
- SvgPathDataException - Exception in com.hfg.svg.path
-
Indicates an exception caused during SVG path data processing.
- SvgPathDataException(String) - Constructor for exception com.hfg.svg.path.SvgPathDataException
-
- SvgPathDataException(String, Throwable) - Constructor for exception com.hfg.svg.path.SvgPathDataException
-
- SvgPathDataException(Throwable) - Constructor for exception com.hfg.svg.path.SvgPathDataException
-
- SvgPathEllipticalArcCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path elliptical arc ('A' or 'a') command.
- SvgPathEllipticalArcCmd() - Constructor for class com.hfg.svg.path.SvgPathEllipticalArcCmd
-
- SvgPathHorizLineToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path horizontal lineTo ('H' or 'h') command.
- SvgPathHorizLineToCmd() - Constructor for class com.hfg.svg.path.SvgPathHorizLineToCmd
-
- SvgPathLineToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path lineTo ('L' or 'l') command.
- SvgPathLineToCmd() - Constructor for class com.hfg.svg.path.SvgPathLineToCmd
-
- SvgPathMoveToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path moveTo ('M' or 'm') command.
- SvgPathMoveToCmd() - Constructor for class com.hfg.svg.path.SvgPathMoveToCmd
-
- SvgPathQuadCurveToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path quadratic curveTo ('Q' or 'q') command.
- SvgPathQuadCurveToCmd() - Constructor for class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- SvgPathQuadCurveToCmd(char) - Constructor for class com.hfg.svg.path.SvgPathQuadCurveToCmd
-
- SvgPathSmoothCurveToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path smooth curveTo ('S' or 's') command.
- SvgPathSmoothCurveToCmd() - Constructor for class com.hfg.svg.path.SvgPathSmoothCurveToCmd
-
- SvgPathSmoothQuadCurveToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path smooth quadratic curveTo ('T' or 't') command.
- SvgPathSmoothQuadCurveToCmd() - Constructor for class com.hfg.svg.path.SvgPathSmoothQuadCurveToCmd
-
- SvgPathVertLineToCmd - Class in com.hfg.svg.path
-
Object representation of an SVG (Scalable Vector Graphics) path vertical lineTo ('V' or 'v') command.
- SvgPathVertLineToCmd() - Constructor for class com.hfg.svg.path.SvgPathVertLineToCmd
-
- SvgPolygon - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) polygon tag.
- SvgPolygon() - Constructor for class com.hfg.svg.SvgPolygon
-
- SvgPolygon(List<? extends Point2D>) - Constructor for class com.hfg.svg.SvgPolygon
-
- SvgPolygon(XMLTag) - Constructor for class com.hfg.svg.SvgPolygon
-
- SvgPolyline - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) polyline tag.
- SvgPolyline() - Constructor for class com.hfg.svg.SvgPolyline
-
- SvgPolyline(List<? extends Point2D>) - Constructor for class com.hfg.svg.SvgPolyline
-
- SvgPolyline(XMLTag) - Constructor for class com.hfg.svg.SvgPolyline
-
- SvgRect - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) rect tag.
- SvgRect() - Constructor for class com.hfg.svg.SvgRect
-
- SvgRect(Rectangle) - Constructor for class com.hfg.svg.SvgRect
-
- SvgRect(Rectangle2D) - Constructor for class com.hfg.svg.SvgRect
-
- SvgRect(XMLTag) - Constructor for class com.hfg.svg.SvgRect
-
- SvgScript - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'script' tag.
- SvgScript() - Constructor for class com.hfg.svg.SvgScript
-
- SvgScript(MimeType) - Constructor for class com.hfg.svg.SvgScript
-
- SvgScript(String) - Constructor for class com.hfg.svg.SvgScript
-
- SvgScript(CharSequence) - Constructor for class com.hfg.svg.SvgScript
-
- SvgScript(XMLTag) - Constructor for class com.hfg.svg.SvgScript
-
- SvgSwitch - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'switch' tag.
- SvgSwitch() - Constructor for class com.hfg.svg.SvgSwitch
-
- SvgSwitch(XMLTag) - Constructor for class com.hfg.svg.SvgSwitch
-
- SvgSymbol - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'symbol' tag.
- SvgSymbol() - Constructor for class com.hfg.svg.SvgSymbol
-
- SvgSymbol(XMLTag) - Constructor for class com.hfg.svg.SvgSymbol
-
- SvgText - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) text tag.
- SvgText() - Constructor for class com.hfg.svg.SvgText
-
- SvgText(String) - Constructor for class com.hfg.svg.SvgText
-
- SvgText(String, Font, Point2D) - Constructor for class com.hfg.svg.SvgText
-
- SvgText(XMLTag) - Constructor for class com.hfg.svg.SvgText
-
- SvgTitle - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'title' tag.
- SvgTitle() - Constructor for class com.hfg.svg.SvgTitle
-
- SvgTitle(CharSequence) - Constructor for class com.hfg.svg.SvgTitle
-
- SvgTitle(XMLTag) - Constructor for class com.hfg.svg.SvgTitle
-
- SvgTSpan - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'tspan' tag.
- SvgTSpan() - Constructor for class com.hfg.svg.SvgTSpan
-
- SvgTSpan(CharSequence) - Constructor for class com.hfg.svg.SvgTSpan
-
- SvgTSpan(XMLTag) - Constructor for class com.hfg.svg.SvgTSpan
-
- SvgUse - Class in com.hfg.svg
-
Object representation of an SVG (Scalable Vector Graphics) 'use' tag.
- SvgUse(String) - Constructor for class com.hfg.svg.SvgUse
-
- SvgUse(String, Point) - Constructor for class com.hfg.svg.SvgUse
-
- SvgUse(XMLTag) - Constructor for class com.hfg.svg.SvgUse
-
- SwaI - Static variable in class com.hfg.bio.molbio.RestrictionEnzyme
-
- swapStartEndValues() - Method in class com.hfg.math.Range
-
- swirligig - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- switch_ - Static variable in class com.hfg.svg.SVG
-
- switchDirection() - Method in class com.hfg.network.Edge
-
- symbol - Static variable in class com.hfg.svg.SVG
-
- SYMBOL - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- SymbolEntities - Class in com.hfg.xml.parser
-
Lookup class for the character entities defined in XHTML1-symbol.ent
- symlink(File, File) - Static method in class com.hfg.util.UnixUtil
-
Function to create a symbolic link.
- SymmetricMatrix<K extends Comparable,V extends Comparable> - Class in com.hfg.util.collection
-
A symmetric matrix (a square matrix with values that are symmetric with respect to the diagonal).
- SymmetricMatrix() - Constructor for class com.hfg.util.collection.SymmetricMatrix
-
- SymmetricMatrix(int) - Constructor for class com.hfg.util.collection.SymmetricMatrix
-
- SymmetricMatrix.MatrixRow - Class in com.hfg.util.collection
-
- SymmetricNumberMatrix<K extends Comparable,V extends Number & Comparable> - Class in com.hfg.util.collection
-
Symmetric matrix specifically for Numbers.
- SymmetricNumberMatrix() - Constructor for class com.hfg.util.collection.SymmetricNumberMatrix
-
- SymmetricNumberMatrix(int) - Constructor for class com.hfg.util.collection.SymmetricNumberMatrix
-
- SYNONYM - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- SYNTHETIC - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Synthetic SYN 7
- SYNTHETIC - Static variable in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
Synthetic SYN
- SYNTHETIC_CONSTRUCT - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Synthetic construct / artificial sequence
- SYS_COLOR - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- systemLanguage - Static variable in class com.hfg.svg.SvgAttr
-
- U - Static variable in class com.hfg.html.HTML
-
- UI_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- UI_PRIORITY - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- UID - Static variable in class com.hfg.ldap.LDAP_Field
-
- UL - Static variable in class com.hfg.html.HTML
-
- Ul - Class in com.hfg.html
-
Represents an unordered list (<ul>) tag.
- Ul() - Constructor for class com.hfg.html.Ul
-
- Ul(XMLNode) - Constructor for class com.hfg.html.Ul
-
- UNASSIGNED - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Unassigned UNA 8 (No species nodes should inherit this division assignment)
- unassigned_DNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- unassigned_RNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- UNCLASSIFIED - Static variable in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
Unclassified UNC
- uncompress(byte[]) - Static method in class com.hfg.util.io.GZIP
-
- uncompressToString(byte[]) - Static method in class com.hfg.util.io.GZIP
-
- UncorrectedModel - Class in com.hfg.bio.phylogeny
-
Distance matrix calculation method that is simply the fraction of mismatches.
- UncorrectedModel() - Constructor for class com.hfg.bio.phylogeny.UncorrectedModel
-
- UNDEFINED - Static variable in class com.hfg.bio.AminoAcid
-
- UNDERLINE - Static variable in class com.hfg.css.CSS
-
Shortcut for 'text-decoration:underline;'
- UNDERLINE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- UNDERLINE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- UNDERSCORE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabLeader
-
An underscore.
- unescapeAttributeValue(String) - Static method in class com.hfg.xml.XMLUtil
-
- unescapeContent(String) - Static method in class com.hfg.xml.XMLUtil
-
- unescapeEntities(String) - Static method in class com.hfg.xml.XMLUtil
-
- unescapeString(String) - Static method in class com.hfg.javascript.JSONUtil
-
Un-escapes JSON string values according to
RFC 4627.
- UNHIDE_WHEN_USED - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- unicode_bidi - Static variable in class com.hfg.css.CSSProperty
-
- UnimplementedFunctionalityException - Exception in com.hfg.exception
-
Indicates that a section of code has been triggered that has not yet been implemented.
- UnimplementedFunctionalityException() - Constructor for exception com.hfg.exception.UnimplementedFunctionalityException
-
- UnimplementedFunctionalityException(String) - Constructor for exception com.hfg.exception.UnimplementedFunctionalityException
-
- UnimplementedFunctionalityException(String, Throwable) - Constructor for exception com.hfg.exception.UnimplementedFunctionalityException
-
- UnimplementedFunctionalityException(Throwable) - Constructor for exception com.hfg.exception.UnimplementedFunctionalityException
-
- UnimplementedMethodException - Exception in com.hfg.exception
-
Indicates that the accessed method has not yet been implemented.
- UnimplementedMethodException() - Constructor for exception com.hfg.exception.UnimplementedMethodException
-
- UnimplementedMethodException(String) - Constructor for exception com.hfg.exception.UnimplementedMethodException
-
- UnimplementedMethodException(String, Throwable) - Constructor for exception com.hfg.exception.UnimplementedMethodException
-
- UnimplementedMethodException(Throwable) - Constructor for exception com.hfg.exception.UnimplementedMethodException
-
- union(Collection<Range<T>>) - Static method in class com.hfg.math.Range
-
Collapses a collection of specified ranges.
- UniProtFeature - Class in com.hfg.bio.seq.format.feature.uniprot
-
- UniProtFeature(UniProtFeatureKey, UniProtFeatureLocation) - Constructor for class com.hfg.bio.seq.format.feature.uniprot.UniProtFeature
-
- UniProtFeatureKey - Class in com.hfg.bio.seq.format.feature.uniprot
-
UniProt feature table keys for flat-file records.
- UniProtFeatureLocation - Class in com.hfg.bio.seq.format.feature.uniprot
-
UniProt feature location.
- UniProtFeatureLocation(String, String) - Constructor for class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureLocation
-
- UniProtFeatureQualifier - Class in com.hfg.bio.seq.format.feature.uniprot
-
UniProt feature table qualifier for flat-file records.
- UniProtFeatureQualifier(UniProtFeatureQualifierName) - Constructor for class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureQualifier
-
- UniProtFeatureQualifier(UniProtFeatureQualifierName, String) - Constructor for class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureQualifier
-
- UniProtFeatureQualifierName - Class in com.hfg.bio.seq.format.feature.uniprot
-
UniProt feature table qualifier names for flat-file records.
- UniprotSpecies - Class in com.hfg.bio.taxonomy.uniprot
-
Species class for Uniprot codes.
- unique(Collection<T>) - Static method in class com.hfg.bio.seq.SeqUtil
-
Retains only a single copy of each distinct sequence.
- UNIQUE_COUNT_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- Unit - Class in com.hfg.units
-
Container for units.
- Unit(QuantityType, String, String, Integer) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, String, String, Integer) - Constructor for class com.hfg.units.Unit
-
- Unit(QuantityType, String, String, Integer, BaseSIUnitConverter) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, String, String, Integer, BaseSIUnitConverter) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, String, String, Integer, BaseSIUnitConverter, SubUnit[]) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, SubUnit) - Constructor for class com.hfg.units.Unit
-
- Unit(Unit, SI_ScalingFactor) - Constructor for class com.hfg.units.Unit
-
- Unit(SubUnit...) - Constructor for class com.hfg.units.Unit
-
- Unit(List<SubUnit>) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, String, String, List<SubUnit>) - Constructor for class com.hfg.units.Unit
-
- Unit(MeasurementSystem, QuantityType, String, String, SubUnit...) - Constructor for class com.hfg.units.Unit
-
- UnitException - Exception in com.hfg.units
-
Exception for problems during unit handling.
- UnitException(String) - Constructor for exception com.hfg.units.UnitException
-
- UnitException(String, Throwable) - Constructor for exception com.hfg.units.UnitException
-
- UnitException(Throwable) - Constructor for exception com.hfg.units.UnitException
-
- UnitParseException - Exception in com.hfg.units
-
Exception for problems parsing unit strings.
- UnitParseException(String) - Constructor for exception com.hfg.units.UnitParseException
-
- UnitParseException(String, Throwable) - Constructor for exception com.hfg.units.UnitParseException
-
- UnitParseException(Throwable) - Constructor for exception com.hfg.units.UnitParseException
-
- UNIX - Static variable in class com.hfg.util.OS
-
- UnixUtil - Class in com.hfg.util
-
Unix utilities.
- UnixUtil() - Constructor for class com.hfg.util.UnixUtil
-
- UNKNOWN - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Unknown / unidentified
- Unknown - Static variable in class com.hfg.util.OS
-
- UNMODIFIED_C_TERMINUS - Static variable in class com.hfg.bio.CTerminalGroup
-
- UNMODIFIED_N_TERMINUS - Static variable in class com.hfg.bio.NTerminalGroup
-
- UnmodifyableObjectException - Exception in com.hfg.exception
-
Indicates that the attempt to modify an object is not allowed.
- UnmodifyableObjectException(String) - Constructor for exception com.hfg.exception.UnmodifyableObjectException
-
- UnmodifyableObjectException(String, Throwable) - Constructor for exception com.hfg.exception.UnmodifyableObjectException
-
- UnmodifyableObjectException(Throwable) - Constructor for exception com.hfg.exception.UnmodifyableObjectException
-
- UNORDERED_LIST_ID - Static variable in class com.hfg.xml.msofficexml.docx.part.NumberingPart
-
- unparsedEntityDecl(String, String, String, String) - Method in class com.hfg.xml.XMLEmitter
-
- UNPUBLISHED_NAME - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- unquote(CharSequence) - Static method in class com.hfg.util.StringUtil
-
Returns the specified String while removing surrounding quotes if present.
- UNSET - Static variable in class com.hfg.html.attribute.VAlign
-
- UNSPECIFIED - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- UnsupportedMethodException - Exception in com.hfg.exception
-
Indicates that the accessed method is not supported.
- UnsupportedMethodException() - Constructor for exception com.hfg.exception.UnsupportedMethodException
-
- UnsupportedMethodException(String) - Constructor for exception com.hfg.exception.UnsupportedMethodException
-
- UnsupportedMethodException(String, Throwable) - Constructor for exception com.hfg.exception.UnsupportedMethodException
-
- UnsupportedMethodException(Throwable) - Constructor for exception com.hfg.exception.UnsupportedMethodException
-
- unsure - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- UNSURE - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- UNUNOCTIUM - Static variable in class com.hfg.chem.Element
-
- UNUNPENTIUM - Static variable in class com.hfg.chem.Element
-
- UNUNSEPTIUM - Static variable in class com.hfg.chem.Element
-
- UNUNTRIUM - Static variable in class com.hfg.chem.Element
-
- unwrap(Class<T>) - Method in class com.hfg.sql.jdbc.JDBCConnection
-
- unwrap(Class<T>) - Method in class com.hfg.sql.jdbc.JDBCDataSource
-
- unwrap(Class<T>) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Returns an object that implements the given interface to allow access to
non-standard methods, or standard methods not exposed by the proxy.
- update(Connection) - Method in class com.hfg.sql.table.DatabaseRow
-
- updateArray(int, Array) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Array value.
- updateArray(String, Array) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Array value.
- updateAsciiStream(int, InputStream, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value, which will have
the specified number of bytes.
- updateAsciiStream(String, InputStream, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value, which will have
the specified number of bytes.
- updateAsciiStream(int, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value, which will have
the specified number of bytes.
- updateAsciiStream(String, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value, which will have
the specified number of bytes.
- updateAsciiStream(int, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value.
- updateAsciiStream(String, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an ascii stream value.
- updateBigDecimal(int, BigDecimal) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.math.BigDecimal
value.
- updateBigDecimal(String, BigDecimal) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.BigDecimal
value.
- updateBinaryStream(int, InputStream, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value, which will have
the specified number of bytes.
- updateBinaryStream(String, InputStream, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value, which will have
the specified number of bytes.
- updateBinaryStream(int, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value, which will have
the specified number of bytes.
- updateBinaryStream(String, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value, which will have
the specified number of bytes.
- updateBinaryStream(int, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value.
- updateBinaryStream(String, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a binary stream value.
- updateBlob(int, Blob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Blob value.
- updateBlob(String, Blob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Blob value.
- updateBlob(int, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given input stream, which
will have the specified number of bytes.
- updateBlob(String, InputStream, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given input stream, which
will have the specified number of bytes.
- updateBlob(int, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given input stream.
- updateBlob(String, InputStream) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given input stream.
- updateBoolean(int, boolean) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a boolean value.
- updateBoolean(String, boolean) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a boolean value.
- updateByte(int, byte) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a byte value.
- updateByte(String, byte) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a byte value.
- updateBytes(int, byte[]) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a byte array value.
- updateBytes(String, byte[]) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a byte array value.
- updateCharacterStream(int, Reader, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateCharacterStream(String, Reader, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateCharacterStream(int, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateCharacterStream(String, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateCharacterStream(int, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value.
- updateCharacterStream(String, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value.
- updateClob(int, Clob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Clob value.
- updateClob(String, Clob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Clob value.
- updateClob(int, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object, which is the given number of characters long.
- updateClob(String, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object, which is the given number of characters long.
- updateClob(int, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object.
- updateClob(String, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object.
- updateDate(int, Date) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Date value.
- updateDate(String, Date) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Date value.
- updateDouble(int, double) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a double value.
- updateDouble(String, double) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a double value.
- updateFloat(int, float) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a float value.
- updateFloat(String, float) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a float value.
- updateInt(int, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an int value.
- updateInt(String, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an int value.
- updateLong(int, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a long value.
- updateLong(String, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a long value.
- updateNCharacterStream(int, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateNCharacterStream(String, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value, which will have
the specified number of bytes.
- updateNCharacterStream(int, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value.
- updateNCharacterStream(String, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a character stream value.
- updateNClob(int, NClob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.NClob value.
- updateNClob(String, NClob) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.NClob value.
- updateNClob(int, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object, which is the given number of characters long.
- updateNClob(String, Reader, long) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object, which is the given number of characters long.
- updateNClob(int, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
- updateNClob(String, Reader) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column using the given Reader
object.
- updateNString(int, String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a String value.
- updateNString(String, String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a String value.
- updateNull(int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a null value.
- updateNull(String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a null value.
- updateObject(int, Object, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(int, Object) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(String, Object, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(String, Object) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(int, Object, SQLType, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(String, Object, SQLType, int) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(int, Object, SQLType) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateObject(String, Object, SQLType) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with an Object value.
- updateRef(int, Ref) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Ref value.
- updateRef(String, Ref) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Ref value.
- updateRow() - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the underlying database with the new contents of the
current row of this ResultSet object.
- updateRowId(int, RowId) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a RowId value.
- updateRowId(String, RowId) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a RowId value.
- updateShort(int, short) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a short value.
- updateShort(String, short) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a short value.
- updateSQLXML(int, SQLXML) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.SQLXML value.
- updateSQLXML(String, SQLXML) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.SQLXML value.
- updateString(int, String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a String value.
- updateString(String, String) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a String value.
- updateTime(int, Time) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Time value.
- updateTime(String, Time) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Time value.
- updateTimestamp(int, Timestamp) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Timestamp
value.
- updateTimestamp(String, Timestamp) - Method in class com.hfg.sql.jdbc.JDBCResultSet
-
Updates the designated column with a java.sql.Timestamp
value.
- UPGMA - Class in com.hfg.bio.phylogeny
-
UPGMA (unweighted pair-group method using arithmetic averages) method of
phylogenetic tree construction.
- UPGMA() - Constructor for class com.hfg.bio.phylogeny.UPGMA
-
- upperLetter - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- upperRoman - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- URACIL - Static variable in class com.hfg.bio.Nucleotide
-
- URANIUM - Static variable in class com.hfg.chem.Element
-
- URANIUM - Static variable in class com.hfg.graphics.ContrastingColorPalette
-
(224, 255, 102)
- URI - Static variable in class com.hfg.cert.SAN_Type
-
- URI_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- URL_ENCODED - Static variable in class com.hfg.html.attribute.EncType
-
application/x-www-form-urlencoded
- US_LEDGER - Static variable in class com.hfg.graphics.PaperSize
-
- US_LEGAL - Static variable in class com.hfg.graphics.PaperSize
-
- US_LETTER - Static variable in class com.hfg.graphics.PaperSize
-
- US_TABLOID - Static variable in class com.hfg.graphics.PaperSize
-
- use - Static variable in class com.hfg.svg.SVG
-
- useAutoTableLayout() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- useCDATA(boolean) - Method in class com.hfg.html.Script
-
Defaults to true.
- useCDATA(boolean) - Method in class com.hfg.svg.SvgScript
-
Defaults to true.
- useDoubleQuotes(boolean) - Static method in class com.hfg.xml.XMLTag
-
- useDoubleQuotes(boolean) - Static method in class com.hfg.xml.XMLUtil
-
Set whether to use double quotes or single quotes for attribute values.
- useFixedTableLayout() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTableProperties
-
- useGet() - Method in class com.hfg.html.Form
-
- UseHTTPS - Static variable in class com.hfg.webapp.filter.auth.LDAP_AuthenticationFilter
-
- USEMAP - Static variable in class com.hfg.html.HTML
-
- useMultipartEncoding() - Method in class com.hfg.html.Form
-
- useNumberMidpoint(Number, Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- usePercentileMidpoint(Integer, Color) - Method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlColorScale
-
- usePost() - Method in class com.hfg.html.Form
-
- User - Interface in com.hfg.util
-
Interface for a basic user object.
- USER_ACCOUNT_CONTROL - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- USER_CERTIFICATE - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- USER_PRINCIPAL_NAME - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- USER_XML_DATA - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- UserAccountControlFlag - Enum in com.hfg.ldap.ad
-
Active Directory user account control flags.
- UserImpl - Class in com.hfg.util
-
Container for user information.
- UserImpl() - Constructor for class com.hfg.util.UserImpl
-
- UserImpl(XMLTag) - Constructor for class com.hfg.util.UserImpl
-
- UserInputException - Exception in com.hfg.exception
-
Indicates that the user provided invalid input.
- UserInputException(String) - Constructor for exception com.hfg.exception.UserInputException
-
- UserInputException(String, Throwable) - Constructor for exception com.hfg.exception.UserInputException
-
- UserInputException(Throwable) - Constructor for exception com.hfg.exception.UserInputException
-
- USERNAME - Static variable in class com.hfg.webapp.filter.auth.AuthenticationFilter
-
- useRoundedTabs(boolean) - Method in class com.hfg.html.custom.TabbedPaneSet
-
Tabs are rounded by default.
- useUrlEncoding() - Method in class com.hfg.html.Form
-
- USN_CHANGED - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- USN_CREATED - Static variable in class com.hfg.ldap.ad.ActiveDirectoryField
-
- USP_unit - Static variable in class com.hfg.units.BiologicalPotencyUnit
-
- V - Static variable in class com.hfg.bio.Nucleotide
-
- V - Static variable in class com.hfg.math.RomanNumeralSymbol
-
The Roman numeral for the integer 5.
- V_region - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- V_segment - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- ValenceModel - Class in com.hfg.chem
-
Valence Model for assigning valence values to Atoms.
- VALID_YN_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- validate() - Method in class com.hfg.bio.seq.ProteinXLink
-
- validate(String, byte[]) - Static method in class com.hfg.util.io.MD5Checksum
-
- validate(InputStream, byte[]) - Static method in class com.hfg.util.io.MD5Checksum
-
- validateMD5(String, byte[]) - Static method in class com.hfg.util.ChecksumUtil
-
- validateMD5(InputStream, byte[]) - Static method in class com.hfg.util.ChecksumUtil
-
- validateSHA1(String, byte[]) - Static method in class com.hfg.util.ChecksumUtil
-
- validateSHA1(InputStream, byte[]) - Static method in class com.hfg.util.ChecksumUtil
-
- VAlign - Class in com.hfg.html.attribute
-
Enum-like alignment class
- VALIGN - Static variable in class com.hfg.html.HTML
-
- VALIGN - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VALINE - Static variable in class com.hfg.bio.AminoAcid
-
- value() - Method in interface com.hfg.graphics.units.GfxSize
-
- value() - Method in class com.hfg.graphics.units.GfxSizeImpl
-
- VALUE - Static variable in class com.hfg.html.HTML
-
- value() - Method in class com.hfg.math.units.AngleImpl
-
- VALUE - Static variable in class com.hfg.setting.SettingXML
-
- Value() - Constructor for class com.hfg.svg.SvgAttr.Value
-
- value() - Static method in class com.hfg.util.OS
-
- Value - Interface in com.hfg.util
-
Interface for a generic value container.
- value() - Method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet.Pane
-
- VALUE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VALUE - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- VALUE_ATT - Static variable in class com.hfg.bio.HfgBioXML
-
- VALUE_ATT - Static variable in class com.hfg.xml.msofficexml.docx.drawingml.DmlXML
-
- VALUE_ATT - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VALUE_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- VALUE_COMPARATOR - Static variable in class com.hfg.util.collection.MatrixCell
-
- ValueImpl - Class in com.hfg.util
-
Simple implementation of the Value interface.
- ValueImpl(Object) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(String) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(Number) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(boolean) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(int) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(long) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(float) - Constructor for class com.hfg.util.ValueImpl
-
- ValueImpl(double) - Constructor for class com.hfg.util.ValueImpl
-
- valueOf(String) - Static method in class com.hfg.bio.AminoAcid
-
Returns the AminoAcid whose name or 3-letter code matches the specified String.
- valueOf(String) - Static method in class com.hfg.bio.CTerminalGroup
-
Returns the CTerminalGroup whose name matches the specified String.
- valueOf(String) - Static method in class com.hfg.bio.glyco.Glycan
-
- valueOf(String) - Static method in class com.hfg.bio.glyco.Monosaccharide
-
- valueOf(String) - Static method in class com.hfg.bio.KaSet
-
- valueOf(String) - Static method in class com.hfg.bio.molbio.RestrictionEnzyme
-
Returns the RestrictionEnzyme whose name matches the specified String.
- valueOf(String) - Static method in class com.hfg.bio.NTerminalGroup
-
Returns the NTerminalGroup whose name matches the specified String.
- valueOf(String) - Static method in enum com.hfg.bio.Nucleotide.BaseType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.bio.Nucleotide
-
Returns the Nucleotide whose name or 1-letter code matches the specified String.
- valueOf(char) - Static method in class com.hfg.bio.Nucleotide
-
Returns the Nucleotide whose 1-letter code matches the specified String.
- valueOf(String) - Static method in enum com.hfg.bio.pH
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.phylogeny.CladogramStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.phylogeny.PhylogeneticTree.Flag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.PhysicalProperty
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.bio.Protease
-
- valueOf(String) - Static method in enum com.hfg.bio.ProteinAnalysisMode
-
Returns the enum constant of this type with the specified name.
- valueOf(KaSet) - Static method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- valueOf(String) - Static method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.blast.BLAST_Program
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.matrix.PSSM.Flag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.muscle.MuscleOutputFormat
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.PairwiseAlignmentType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.PairwiseSeqTerminus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.alignment.PairwiseSeqType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.BioSequenceType
-
Returns the enum constant of this type with the specified name.
- valueOf(char) - Static method in enum com.hfg.bio.seq.BioSequenceType
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.EMBL_DataClass
-
Returns the corresponding EMBL_DataClass by comparing the value to the
name and code values of the enumerated set.
- valueOf(String) - Static method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
Returns the corresponding MolType by comparing the value to the
name values of the enumerated set.
- valueOf(String) - Static method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureQualifierName
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- valueOf(String) - Static method in class com.hfg.bio.seq.format.genbank.GenBankSubkeyword
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyReleaseType
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicPairedAssemblyComparison
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRefSeqCategory
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRelationToTypeMaterial
-
- valueOf(String) - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRepresentation
-
- valueOf(String) - Static method in enum com.hfg.bio.seq.NucleotideEnd
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.pattern.PrositePatternPositionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.PositionalFrequencyMatrix.Flag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.bio.seq.ProteinXLinkChainLinkage
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.bio.seq.ProteinXLinkType
-
Returns the ProteinXLinkType whose name matches the specified String.
- valueOf(String) - Static method in enum com.hfg.bio.seq.SeqQualityScoreScheme
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.bio.seq.SeqTopology
-
Returns the corresponding SeqTopology by comparing the value to the
names in the enumerated set.
- valueOf(String) - Static method in class com.hfg.bio.seq.translation.TranslationFrame
-
- valueOf(char) - Static method in class com.hfg.bio.seq.translation.TranslationFrame
-
- valueOf(int) - Static method in class com.hfg.bio.seq.translation.TranslationFrame
-
- valueOf(String) - Static method in class com.hfg.bio.Strand
-
- valueOf(int) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Returns the corresponding NCBIGenBankDivision by comparing the id to the
id values of the enumerated set.
- valueOf(String) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Returns the corresponding NCBIGenBankDivision by comparing the value to the
name, code, and id values of the enumerated set.
- valueOf(String) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- valueOf(String) - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- valueOf(String) - Static method in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
Returns the corresponding EMBL_TaxonDivision by comparing the value to the
name and code values of the enumerated set.
- valueOf(int) - Static method in class com.hfg.cert.SAN_Type
-
- valueOf(String) - Static method in enum com.hfg.chem.Atom.ChiralityOrder
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.chem.Charge
-
- valueOf(String) - Static method in class com.hfg.chem.Element
-
- valueOf(String, Case) - Static method in class com.hfg.chem.Element
-
- valueOf(Integer) - Static method in class com.hfg.chem.Element
-
- valueOf(Element, int) - Static method in class com.hfg.chem.Isotope
-
- valueOf(String) - Static method in enum com.hfg.citation.CitationType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.citation.MediaType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.citation.ncbi.MedlineCitationStatus
-
- valueOf(String) - Static method in class com.hfg.css.CSSBorderStyle
-
- valueOf(String) - Static method in enum com.hfg.css.CSSDisplayValue
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.css.CSSMediaQuery.Flag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.css.CSSMediaType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.css.CSSProperty
-
- valueOf(String) - Static method in class com.hfg.graphics.BorderType
-
- valueOf(String) - Static method in enum com.hfg.graphics.ColorChannel
-
Returns the enum constant of this type with the specified name.
- valueOf(int) - Static method in class com.hfg.graphics.font.FontStyle
-
- valueOf(String) - Static method in class com.hfg.graphics.font.FontStyle
-
- valueOf(String) - Static method in class com.hfg.graphics.units.GfxUnits
-
- valueOf(String) - Static method in class com.hfg.html.attribute.Align
-
- valueOf(String) - Static method in class com.hfg.html.attribute.HTMLColor
-
Turns a string value like 'blue' or a hexadecimal value into an HTMLColor object.
- valueOf(Color) - Static method in class com.hfg.html.attribute.HTMLColor
-
Turns a Color value into an HTMLColor object.
- valueOf(String) - Static method in class com.hfg.html.attribute.VAlign
-
- valueOf(String) - Static method in enum com.hfg.html.custom.CheckboxState
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.image.ImageFormat
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.javascript.ext.ExtFieldType
-
- valueOf(DataType) - Static method in class com.hfg.javascript.ext.ExtFieldType
-
- valueOf(String) - Static method in enum com.hfg.ldap.ad.UserAccountControlFlag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.ldap.LDAPClient.ReferralHandling
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.math.RelationalOperator
-
- valueOf(char) - Static method in class com.hfg.math.RomanNumeralSymbol
-
Returns the RomanNumeralSymbol value for the specified character.
- valueOf(String) - Static method in enum com.hfg.math.SetPartitionIterator.Flag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.math.units.AngleUnits
-
- valueOf(String) - Static method in enum com.hfg.security.AuthenticationProvider
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.sql.jdbc.ConnectionMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.sql.SQLClauseType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Method in class com.hfg.sql.SQLJoinType
-
- valueOf(String) - Static method in enum com.hfg.sql.WhereClauseGroup.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.ColorInterpolationFilters
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.ColorMatrixType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.ComponentTransferType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.CompositingOperatorType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.FilterCoordinateSystem
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.ImageBlendingMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.MatrixEdgeMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.MorphologyOperator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.filtereffect.TurbulenceType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.svg.MarkerCoordinateSystem
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.ui.ClickEvent.Modifier
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.units.AmountOfSubstanceUnit
-
- valueOf(String) - Static method in class com.hfg.units.AreaUnit
-
- valueOf(String) - Static method in class com.hfg.units.BiologicalPotencyUnit
-
- valueOf(String) - Static method in class com.hfg.units.CatalyticActivityUnit
-
- valueOf(String) - Static method in class com.hfg.units.ElectricCurrentUnit
-
- valueOf(String) - Static method in class com.hfg.units.LengthUnit
-
- valueOf(String) - Static method in class com.hfg.units.LuminousIntensityUnit
-
- valueOf(String) - Static method in class com.hfg.units.MassUnit
-
- valueOf(String) - Static method in class com.hfg.units.SI_ScalingFactor
-
- valueOf(String) - Static method in class com.hfg.units.TemperatureUnit
-
- valueOf(String) - Static method in class com.hfg.units.TimeUnit
-
Returns the TimeUnit object that corresponds to the specified name or abbreviation string.
- valueOf(SubUnit) - Static method in class com.hfg.units.Unit
-
- valueOf(List<SubUnit>) - Static method in class com.hfg.units.Unit
-
- valueOf(String) - Static method in class com.hfg.units.Unit
-
- valueOf(String) - Static method in class com.hfg.units.VolumeUnit
-
- valueOf(String) - Static method in enum com.hfg.util.AppMode
-
Returns the enum constant of this type with the specified name.
- valueOf(Object) - Static method in class com.hfg.util.BooleanUtil
-
- valueOf(String) - Static method in class com.hfg.util.BooleanUtil
-
- valueOf(Character) - Static method in class com.hfg.util.BooleanUtil
-
- valueOf(Integer) - Static method in class com.hfg.util.BooleanUtil
-
- valueOf(String) - Static method in enum com.hfg.util.Case
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.util.CopyMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.util.DataType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.util.ForceCase
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.util.mime.MimeType
-
- valueOf(String) - Static method in enum com.hfg.util.Orientation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.util.OS
-
- valueOf(String) - Static method in enum com.hfg.util.Priority
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.util.Recursion
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.util.StmtJoinMethod
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.Doctype
-
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorderPosition
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelDataType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelHorizontalAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelLineStyle
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelVerticalAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet.Pane
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.drawingml.color.DmlSchemeColorValue
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.DmlBlackWhiteMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.DmlShapeType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill.TileRectFlip
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontCollectionIndex
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.dash.DmlPresetLineDashType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlCompoundLineType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineEndCapType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineEndType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlPenAlignmentType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextAnchoringType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.FieldFormatNumeric
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.FieldFormatText
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlComplexFieldCharType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlBorderPosition
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlHighlightColor
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlJustification
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlLineBorderStyle
-
- valueOf(CSSBorderStyle) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlLineBorderStyle
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading.ShadingValue
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyleType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder.Position
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder.Position
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellMargin.Position
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyleProperties.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextDirection
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlVerticalJustification
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlHeaderFooterType
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabLeader
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabStyle
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlVerticalMerge
-
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.OfficeOpenXmlMimeType
-
Look up a OfficeOpenXML mime type by String value or by extension.
- valueOf(int) - Static method in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
Returns the object corresponding to the specified index.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor
-
Returns the object corresponding to the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor.EditMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlActivePane
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCellType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfOperator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRuleType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfTimePeriod
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidationType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlExtension.URI_Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPaneState
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetViewType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderStyle
-
- valueOf(CSSBorderStyle) - Static method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderStyle
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlHorizontalAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(Align) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlHorizontalAlign
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlPatternType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlTextVerticalAlignRunType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlUnderlineType
-
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlVerticalAlign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.msofficexml.xlsx.XlsxConfig.Feature
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.XMLContainerImpl.sMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum com.hfg.xml.XMLSpec
-
Returns the enum constant of this type with the specified name.
- values() - Static method in class com.hfg.bio.AminoAcid
-
- values() - Static method in class com.hfg.bio.CTerminalGroup
-
- values() - Static method in class com.hfg.bio.glyco.Glycan
-
- values() - Static method in class com.hfg.bio.glyco.Monosaccharide
-
- values() - Static method in class com.hfg.bio.KaSet
-
- values() - Static method in class com.hfg.bio.molbio.RestrictionEnzyme
-
- values() - Static method in class com.hfg.bio.NTerminalGroup
-
- values() - Static method in enum com.hfg.bio.Nucleotide.BaseType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.Nucleotide
-
- values() - Static method in enum com.hfg.bio.pH
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.phylogeny.CladogramStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.phylogeny.PhylogeneticTree.Flag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.PhysicalProperty
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.Protease
-
- values() - Static method in enum com.hfg.bio.ProteinAnalysisMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.proteinproperty.ChemicalFormula
-
- values() - Static method in class com.hfg.bio.proteinproperty.ExtinctionCoeff
-
- values() - Static method in class com.hfg.bio.proteinproperty.Hydrophobicity
-
- values() - Static method in class com.hfg.bio.proteinproperty.IsoelectricPoint
-
- values() - Static method in class com.hfg.bio.proteinproperty.Mass
-
- values() - Static method in class com.hfg.bio.proteinproperty.PctExtinctionCoeff
-
- values() - Static method in class com.hfg.bio.proteinproperty.SeqLength
-
- values() - Static method in class com.hfg.bio.proteinproperty.SimpleProteinProperty
-
- values() - Static method in enum com.hfg.bio.seq.alignment.blast.BLAST_Program
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.alignment.matrix.PSSM.Flag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.seq.alignment.matrix.SubstitutionMatrix
-
- values() - Static method in enum com.hfg.bio.seq.alignment.muscle.MuscleOutputFormat
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.alignment.PairwiseAlignmentType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.alignment.PairwiseSeqTerminus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.alignment.PairwiseSeqType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.BioSequenceType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.seq.format.EMBL_DataClass
-
- values() - Static method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- values() - Static method in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- values() - Static method in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- values() - Static method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- values() - Static method in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureQualifierName
-
- values() - Static method in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- values() - Static method in class com.hfg.bio.seq.format.genbank.GenBankSubkeyword
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyReleaseType
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicPairedAssemblyComparison
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRefSeqCategory
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRelationToTypeMaterial
-
- values() - Static method in class com.hfg.bio.seq.genomic.assembly.GenomicRepresentation
-
- values() - Static method in enum com.hfg.bio.seq.NucleotideEnd
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.pattern.PrositePatternPositionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.PositionalFrequencyMatrix.Flag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.bio.seq.ProteinXLinkChainLinkage
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.seq.ProteinXLinkType
-
- values() - Static method in enum com.hfg.bio.seq.SeqQualityScoreScheme
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.bio.seq.SeqTopology
-
- values() - Static method in class com.hfg.bio.seq.translation.TranslationFrame
-
- values(Strand) - Static method in class com.hfg.bio.seq.translation.TranslationFrame
-
- values() - Static method in class com.hfg.bio.Strand
-
- values() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
- values() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass
-
- values() - Static method in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- values() - Static method in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
- values() - Static method in class com.hfg.cert.SAN_Type
-
- values() - Static method in enum com.hfg.chem.Atom.ChiralityOrder
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.chem.Element
-
- values() - Static method in enum com.hfg.citation.CitationType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.citation.MediaType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.citation.ncbi.MedlineCitationStatus
-
- values() - Static method in class com.hfg.css.CSSBorderStyle
-
- values() - Static method in enum com.hfg.css.CSSDisplayValue
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.css.CSSMediaQuery.Flag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.css.CSSMediaType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.graphics.BorderType
-
- values() - Static method in enum com.hfg.graphics.ColorChannel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.graphics.font.FontStyle
-
- values() - Static method in class com.hfg.html.attribute.Align
-
- values() - Static method in class com.hfg.html.attribute.HTMLColor
-
Returns 134 standard named HTML colors.
- values() - Static method in class com.hfg.html.attribute.VAlign
-
- values() - Static method in enum com.hfg.html.custom.CheckboxState
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.image.ImageFormat
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.javascript.ext.ExtFieldType
-
- values() - Static method in enum com.hfg.ldap.ad.UserAccountControlFlag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.ldap.LDAPClient.ReferralHandling
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.math.RelationalOperator
-
- values() - Static method in class com.hfg.math.RomanNumeralSymbol
-
Returns an array of all the RomanNumeralSymbol values.
- values() - Static method in enum com.hfg.math.SetPartitionIterator.Flag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.security.AuthenticationProvider
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.sql.jdbc.ConnectionMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.sql.SQLClauseType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Method in class com.hfg.sql.SQLJoinType
-
- values() - Static method in enum com.hfg.sql.WhereClauseGroup.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.ColorInterpolationFilters
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.ColorMatrixType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.ComponentTransferType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.CompositingOperatorType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.FilterCoordinateSystem
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.ImageBlendingMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.MatrixEdgeMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.MorphologyOperator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.filtereffect.TurbulenceType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.svg.MarkerCoordinateSystem
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values - Static variable in class com.hfg.svg.SvgAttr
-
- values() - Static method in enum com.hfg.ui.ClickEvent.Modifier
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.units.ConcentrationUnit
-
- values() - Static method in class com.hfg.units.SI_ScalingFactor
-
- values() - Static method in class com.hfg.units.TimeUnit
-
- values() - Static method in class com.hfg.units.Unit
-
- values() - Static method in class com.hfg.units.VolumeUnit
-
- values() - Static method in enum com.hfg.util.AppMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.Case
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Method in class com.hfg.util.collection.OrderedMap
-
- values() - Static method in enum com.hfg.util.CopyMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.DataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.ForceCase
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.Orientation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.util.OS
-
- values() - Static method in enum com.hfg.util.Priority
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.Recursion
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.util.StmtJoinMethod
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelBorderPosition
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelDataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelHorizontalAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelLineStyle
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelVerticalAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msoffice2003.spreadsheetml.ExcelWorksheet.Pane
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.xml.msofficexml.docx.drawingml.color.DmlSchemeColorValue
-
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.DmlBlackWhiteMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.DmlShapeType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.fill.DmlGradientFill.TileRectFlip
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.font.DmlFontCollectionIndex
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.dash.DmlPresetLineDashType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlCompoundLineType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineEndCapType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlLineEndType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.line.DmlPenAlignmentType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.drawingml.text.DmlTextAnchoringType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.FieldFormatNumeric
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.FieldFormatText
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.field.WmlComplexFieldCharType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlHighlightColor
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlJustification
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlShading.ShadingValue
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlStyleType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableBorder.Position
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellBorder.Position
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableCellMargin.Position
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTableStyleProperties.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlTextDirection
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlVerticalJustification
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- values() - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabLeader
-
- values() - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTabStyle
-
- values() - Static method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlVerticalMerge
-
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetDrawing.SsDrawTwoCellAnchor.EditMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlActivePane
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCellType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfOperator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfRuleType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlCfTimePeriod
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlDataValidationType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlExtension.URI_Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlPaneState
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlSheetViewType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlBorderType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlHorizontalAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlPatternType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlTextVerticalAlignRunType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlUnderlineType
-
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.spreadsheetml.style.SsmlVerticalAlign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.msofficexml.xlsx.XlsxConfig.Feature
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.XMLContainerImpl.sMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum com.hfg.xml.XMLSpec
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- valuesForElement(Element) - Static method in class com.hfg.chem.Isotope
-
- VANADIUM - Static variable in class com.hfg.chem.Element
-
- vanish() - Method in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlTextRunProperties
-
- VANISH - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VAR_SEQ - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- VARIANT - Static variable in class com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey
-
- variation - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey
-
- VARIETAS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank
-
- variety - Static variable in class com.hfg.bio.seq.format.feature.genbank.GenBankFeatureQualifierName
-
- VBA_DATA_FILE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VBA_PROJECT - Static variable in class com.hfg.xml.msofficexml.RelationshipType
-
- VBA_PROJECT_NAME - Static variable in class com.hfg.xml.msofficexml.docx.part.WmlVbaPart
-
- VBA_RELATIONSHIP_FILE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VBA_SUPPORT_DATA - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VbaDataPart - Class in com.hfg.xml.msofficexml.docx.part
-
Represents an Office Open XML VBA data part.
- VbaDataPart(OfficeOpenXmlDocument) - Constructor for class com.hfg.xml.msofficexml.docx.part.VbaDataPart
-
- VbaPart - Class in com.hfg.xml.msofficexml.part
-
Represents an Office Open XML VBA part.
- VbaPart(InputStream, String) - Constructor for class com.hfg.xml.msofficexml.part.VbaPart
-
- VbaRelationshipPart - Class in com.hfg.xml.msofficexml.docx.part
-
Represents the VBA relationship part (container) for an Office Open XML.
- VbaRelationshipPart(Docx) - Constructor for class com.hfg.xml.msofficexml.docx.part.VbaRelationshipPart
-
- VBSCRIPT - Static variable in class com.hfg.html.Script
-
- verifyCertificates(String) - Static method in class com.hfg.cert.CertificateUtil
-
- verifyQuantityType(QuantityType) - Method in class com.hfg.units.Quantity
-
Performs a validation test to ensure that the unit is of the expected quantity type.
- verifySignature(PublicKey, byte[], byte[]) - Static method in class com.hfg.security.DSAUtil
-
- verifySignature(PublicKey, InputStream, byte[]) - Static method in class com.hfg.security.DSAUtil
-
- verifySignatureWithECDSA(PublicKey, String, byte[]) - Static method in class com.hfg.util.CryptoUtil
-
Verifies a signature give a public key, the signed text, and the signature.
- verifyTagName(String) - Method in interface com.hfg.xml.XMLNode
-
- verifyTagName(String, Case) - Method in interface com.hfg.xml.XMLNode
-
- verifyTagName(XMLName) - Method in interface com.hfg.xml.XMLNode
-
- verifyTagName(XMLName, Case) - Method in interface com.hfg.xml.XMLNode
-
- verifyTagName(XMLName) - Method in class com.hfg.xml.XMLTag
-
- verifyTagName(XMLName, Case) - Method in class com.hfg.xml.XMLTag
-
- verifyTagName(String) - Method in class com.hfg.xml.XMLTag
-
- verifyTagName(String, Case) - Method in class com.hfg.xml.XMLTag
-
- VERSION - Static variable in class com.hfg.bio.seq.format.genbank.GenBankKeyword
-
- VERSION - Static variable in class com.hfg.HfgLibraryInfo
-
The com.hfg library release version.
- VERSION_ATT - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- VERT_ALIGN - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VERTEBRATE_MITO - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGeneticCode
-
- VERTEBRATES - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Vertebrates VRT 10
- VERTICAL - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- vertical_align - Static variable in class com.hfg.css.CSSProperty
-
- VERTICAL_ALIGN - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- VERTICAL_ATT - Static variable in class com.hfg.xml.msoffice2003.spreadsheetml.SpreadsheetML
-
- VERTICAL_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- verticalAlign(VAlign) - Static method in class com.hfg.css.CSS
-
- VICUGNA_PACOS - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBITaxon
-
Alpaca
- VIDEO_MPEG - Static variable in class com.hfg.util.mime.MimeType
-
- VIDEO_OGG - Static variable in class com.hfg.util.mime.MimeType
-
- VIDEO_WEBM - Static variable in class com.hfg.util.mime.MimeType
-
- vietnameseCounting - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlNumberingFormat
-
- VIEW_ATT - Static variable in class com.hfg.xml.msofficexml.xlsx.spreadsheetml.SsmlXML
-
- viewBox - Static variable in class com.hfg.svg.SvgAttr
-
- vine - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.style.WmlArtBorderStyle
-
- VIOLET - Static variable in class com.hfg.graphics.ContrastingColorPalette
-
(116, 10, 255)
- VIOLET - Static variable in class com.hfg.html.attribute.HTMLColor
-
(238, 130, 238)
- VIOLET_RED - Static variable in class com.hfg.html.attribute.HTMLColor
-
(208, 32, 144)
- VIRAL - Static variable in class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision
-
Viral VRL
- viral_cDNA - Static variable in class com.hfg.bio.seq.format.feature.qualifier.MolType
-
- VIRUSES - Static variable in class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision
-
Viruses VRL 9
- visibility - Static variable in class com.hfg.css.CSSProperty
-
- VMERGE - Static variable in class com.hfg.xml.msofficexml.docx.wordprocessingml.WmlXML
-
- VML_NAMESPACE - Static variable in class com.hfg.xml.msofficexml.OfficeXML
-
- voice_balance - Static variable in class com.hfg.css.CSSProperty
-
- voice_duration - Static variable in class com.hfg.css.CSSProperty
-
- voice_family - Static variable in class com.hfg.css.CSSProperty
-
- voice_pitch - Static variable in class com.hfg.css.CSSProperty
-
- voice_range - Static variable in class com.hfg.css.CSSProperty
-
- voice_rate - Static variable in class com.hfg.css.CSSProperty
-
- voice_stress - Static variable in class com.hfg.css.CSSProperty
-
- voice_volume - Static variable in class com.hfg.css.CSSProperty
-
- VOLUME - Static variable in class com.hfg.citation.ncbi.PubmedXML
-
- volume - Static variable in class com.hfg.css.CSSProperty
-
- VOLUME - Static variable in class com.hfg.units.QuantityType
-
- volume_fraction - Static variable in class com.hfg.units.ConcentrationUnit
-
Volume fraction is the volume of a substance divided by the volume of the total mixture
- VolumeUnit - Class in com.hfg.units
-
Enumeration of standard volume units.
- VolumeUnit(List<SubUnit>) - Constructor for class com.hfg.units.VolumeUnit
-
- VSPACE - Static variable in class com.hfg.html.HTML
-
