com.hfg.chem.format

Class MDL_SDF<T extends Molecule>

java.lang.Object

com.hfg.chem.format.ReadableChemFormatBase<T>

com.hfg.chem.format.MDL_SDF<T>

All Implemented Interfaces:

ReadableChemFormat<T>

public class MDL_SDF<T extends Molecule>
extends ReadableChemFormatBase<T>

Basic implementation of the MDL SDF format.

Constructor Summary

Constructors

Constructor and Description
MDL_SDF()
MDL_SDF(MoleculeFactory<T> inMoleculeFactory)

Method Summary

Modifier and Type	Method and Description
boolean	hasJanusDelimiter() A format has a Janus delimiter if the line that indicates that the previous record is over is also part of the next record.
boolean	isEndOfRecord(String inLine)
T	readRecord(BufferedReader inReader)

Methods inherited from class com.hfg.chem.format.ReadableChemFormatBase

getMoleculeFactory, read, read, readRecord, setBioSequenceFactory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MDL_SDF

public MDL_SDF()

MDL_SDF

public MDL_SDF(MoleculeFactory<T> inMoleculeFactory)

Method Detail

hasJanusDelimiter

public boolean hasJanusDelimiter()

Description copied from interface: ReadableChemFormat

A format has a Janus delimiter if the line that indicates that the previous record is over is also part of the next record.

Returns:

whether or not this format's record delimiter is also part of the next record

isEndOfRecord

public boolean isEndOfRecord(String inLine)

readRecord

public T readRecord(BufferedReader inReader)
             throws ChemIOException

Throws:

ChemIOException