com.hfg.bio.seq.format.feature.genbank

Class GenBankFeatureKey

java.lang.Object

com.hfg.bio.seq.format.feature.genbank.GenBankFeatureKey

All Implemented Interfaces:

FeatureKey

public class GenBankFeatureKey
extends Object
implements FeatureKey

DDBJ/EMBL/GenBank feature table keys for flat-file records.

See http://www.insdc.org/documents/feature-table

Field Summary

Fields

Modifier and Type	Field and Description
static GenBankFeatureKey	assembly_gap
static GenBankFeatureKey	attenuator
static GenBankFeatureKey	C_region
static GenBankFeatureKey	CAAT_signal
static GenBankFeatureKey	CDS
static GenBankFeatureKey	centromere
static GenBankFeatureKey	conflict
static GenBankFeatureKey	D_loop
static GenBankFeatureKey	D_segment
static GenBankFeatureKey	enhancer
static GenBankFeatureKey	exon
static GenBankFeatureKey	FivePrime_UTR
static GenBankFeatureKey	gap
static GenBankFeatureKey	GC_signal
static GenBankFeatureKey	gene
static GenBankFeatureKey	iDNA
static GenBankFeatureKey	intron
static GenBankFeatureKey	J_segment
static GenBankFeatureKey	LTR
static GenBankFeatureKey	mat_peptide
static GenBankFeatureKey	Minus10_signal
static GenBankFeatureKey	Minus35_signal
static GenBankFeatureKey	misc_binding
static GenBankFeatureKey	misc_difference
static GenBankFeatureKey	misc_feature
static GenBankFeatureKey	misc_recomb
static GenBankFeatureKey	misc_RNA
static GenBankFeatureKey	misc_signal
static GenBankFeatureKey	misc_structure
static GenBankFeatureKey	mobile_element
static GenBankFeatureKey	modified_base
static GenBankFeatureKey	mRNA
static GenBankFeatureKey	N_region
static GenBankFeatureKey	ncRNA
static GenBankFeatureKey	old_sequence
static GenBankFeatureKey	operon
static GenBankFeatureKey	oriT
static GenBankFeatureKey	polyA_signal
static GenBankFeatureKey	polyA_site
static GenBankFeatureKey	precursor_RNA
static GenBankFeatureKey	prim_transcript
static GenBankFeatureKey	primer_bind
static GenBankFeatureKey	promoter
static GenBankFeatureKey	protein_bind
static GenBankFeatureKey	RBS
static GenBankFeatureKey	regulatory
static GenBankFeatureKey	rep_origin
static GenBankFeatureKey	repeat_region
static GenBankFeatureKey	rRNA
static GenBankFeatureKey	S_region
static GenBankFeatureKey	sig_peptide
static GenBankFeatureKey	source
static GenBankFeatureKey	stem_loop
static GenBankFeatureKey	STS
static GenBankFeatureKey	TATA_signal
static GenBankFeatureKey	telomere
static GenBankFeatureKey	terminator
static GenBankFeatureKey	ThreePrime_UTR
static GenBankFeatureKey	tmRNA
static GenBankFeatureKey	transit_peptide
static GenBankFeatureKey	tRNA
static GenBankFeatureKey	unsure
static GenBankFeatureKey	V_region
static GenBankFeatureKey	V_segment
static GenBankFeatureKey	variation

Method Summary

Modifier and Type	Method and Description
String	getDescription()
String	name()
String	toString()
static GenBankFeatureKey	valueOf(String inValue)
static Collection<GenBankFeatureKey>	values()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

assembly_gap

public static final GenBankFeatureKey assembly_gap

attenuator

public static final GenBankFeatureKey attenuator

C_region

public static final GenBankFeatureKey C_region

CAAT_signal

public static final GenBankFeatureKey CAAT_signal

CDS

public static final GenBankFeatureKey CDS

centromere

public static final GenBankFeatureKey centromere

conflict

public static final GenBankFeatureKey conflict

D_loop

public static final GenBankFeatureKey D_loop

D_segment

public static final GenBankFeatureKey D_segment

enhancer

public static final GenBankFeatureKey enhancer

exon

public static final GenBankFeatureKey exon

gap

public static final GenBankFeatureKey gap

GC_signal

public static final GenBankFeatureKey GC_signal

gene

public static final GenBankFeatureKey gene

iDNA

public static final GenBankFeatureKey iDNA

intron

public static final GenBankFeatureKey intron

J_segment

public static final GenBankFeatureKey J_segment

LTR

public static final GenBankFeatureKey LTR

mat_peptide

public static final GenBankFeatureKey mat_peptide

misc_binding

public static final GenBankFeatureKey misc_binding

misc_difference

public static final GenBankFeatureKey misc_difference

misc_feature

public static final GenBankFeatureKey misc_feature

misc_recomb

public static final GenBankFeatureKey misc_recomb

misc_RNA

public static final GenBankFeatureKey misc_RNA

misc_signal

public static final GenBankFeatureKey misc_signal

misc_structure

public static final GenBankFeatureKey misc_structure

mobile_element

public static final GenBankFeatureKey mobile_element

modified_base

public static final GenBankFeatureKey modified_base

mRNA

public static final GenBankFeatureKey mRNA

ncRNA

public static final GenBankFeatureKey ncRNA

N_region

public static final GenBankFeatureKey N_region

old_sequence

public static final GenBankFeatureKey old_sequence

operon

public static final GenBankFeatureKey operon

oriT

public static final GenBankFeatureKey oriT

polyA_signal

public static final GenBankFeatureKey polyA_signal

polyA_site

public static final GenBankFeatureKey polyA_site

precursor_RNA

public static final GenBankFeatureKey precursor_RNA

prim_transcript

public static final GenBankFeatureKey prim_transcript

primer_bind

public static final GenBankFeatureKey primer_bind

promoter

public static final GenBankFeatureKey promoter

protein_bind

public static final GenBankFeatureKey protein_bind

RBS

public static final GenBankFeatureKey RBS

regulatory

public static final GenBankFeatureKey regulatory

repeat_region

public static final GenBankFeatureKey repeat_region

rep_origin

public static final GenBankFeatureKey rep_origin

rRNA

public static final GenBankFeatureKey rRNA

S_region

public static final GenBankFeatureKey S_region

sig_peptide

public static final GenBankFeatureKey sig_peptide

source

public static final GenBankFeatureKey source

stem_loop

public static final GenBankFeatureKey stem_loop

STS

public static final GenBankFeatureKey STS

TATA_signal

public static final GenBankFeatureKey TATA_signal

telomere

public static final GenBankFeatureKey telomere

terminator

public static final GenBankFeatureKey terminator

tmRNA

public static final GenBankFeatureKey tmRNA

transit_peptide

public static final GenBankFeatureKey transit_peptide

tRNA

public static final GenBankFeatureKey tRNA

unsure

public static final GenBankFeatureKey unsure

V_region

public static final GenBankFeatureKey V_region

V_segment

public static final GenBankFeatureKey V_segment

variation

public static final GenBankFeatureKey variation

ThreePrime_UTR

public static final GenBankFeatureKey ThreePrime_UTR

FivePrime_UTR

public static final GenBankFeatureKey FivePrime_UTR

Minus10_signal

public static final GenBankFeatureKey Minus10_signal

Minus35_signal

public static final GenBankFeatureKey Minus35_signal

Method Detail

valueOf

public static GenBankFeatureKey valueOf(String inValue)

values

public static Collection<GenBankFeatureKey> values()

name

public String name()

Specified by:

name in interface FeatureKey

toString

public String toString()

Overrides:

toString in class Object

getDescription

public String getDescription()

Specified by:

getDescription in interface FeatureKey