com.hfg.bio.taxonomy.ncbi

Class NCBITaxonNodeRank

java.lang.Object

com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank

All Implemented Interfaces:

Serializable, Comparable<NCBITaxonNodeRank>

public class NCBITaxonNodeRank
extends Object
implements Comparable<NCBITaxonNodeRank>, Serializable

NCBI taxonomy levels.

Based on values in the nodes.dmp file in ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static NCBITaxonNodeRank	BIOTYPE
static NCBITaxonNodeRank	CLADE
static NCBITaxonNodeRank	CLASS
static NCBITaxonNodeRank	COHORT
static NCBITaxonNodeRank	FAMILY
static NCBITaxonNodeRank	FORMA
static NCBITaxonNodeRank	FORMA_SPECIALIS
static NCBITaxonNodeRank	GENOTYPE
static NCBITaxonNodeRank	GENUS
static NCBITaxonNodeRank	INFRACLASS
static NCBITaxonNodeRank	INFRAORDER
static NCBITaxonNodeRank	ISOLATE
static NCBITaxonNodeRank	KINGDOM
static NCBITaxonNodeRank	MORPH
static NCBITaxonNodeRank	NO_RANK
static NCBITaxonNodeRank	ORDER
static NCBITaxonNodeRank	PARVORDER
static NCBITaxonNodeRank	PATHOGROUP
static NCBITaxonNodeRank	PHYLUM
static NCBITaxonNodeRank	SECTION
static NCBITaxonNodeRank	SERIES
static NCBITaxonNodeRank	SEROGROUP
static NCBITaxonNodeRank	SEROTYPE
static NCBITaxonNodeRank	SPECIES
static NCBITaxonNodeRank	SPECIES_GROUP
static NCBITaxonNodeRank	SPECIES_SUBGROUP
static NCBITaxonNodeRank	STRAIN
static NCBITaxonNodeRank	SUBCLASS
static NCBITaxonNodeRank	SUBCOHORT
static NCBITaxonNodeRank	SUBFAMILY
static NCBITaxonNodeRank	SUBGENUS
static NCBITaxonNodeRank	SUBKINGDOM
static NCBITaxonNodeRank	SUBORDER
static NCBITaxonNodeRank	SUBPHYLUM
static NCBITaxonNodeRank	SUBSECTION
static NCBITaxonNodeRank	SUBSPECIES
static NCBITaxonNodeRank	SUBTRIBE
static NCBITaxonNodeRank	SUBVARIETY
static NCBITaxonNodeRank	SUPERCLASS
static NCBITaxonNodeRank	SUPERFAMILY
static NCBITaxonNodeRank	SUPERKINGDOM
static NCBITaxonNodeRank	SUPERORDER
static NCBITaxonNodeRank	SUPERPHYLUM
static NCBITaxonNodeRank	TRIBE
static NCBITaxonNodeRank	VARIETAS

Method Summary

Modifier and Type	Method and Description
int	compareTo(NCBITaxonNodeRank inObj)
String	name()
String	toString() The same as name().
static NCBITaxonNodeRank	valueOf(String inValue)
static Collection<NCBITaxonNodeRank>	values()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SUPERKINGDOM

public static NCBITaxonNodeRank SUPERKINGDOM

KINGDOM

public static NCBITaxonNodeRank KINGDOM

SUBKINGDOM

public static NCBITaxonNodeRank SUBKINGDOM

SUPERPHYLUM

public static NCBITaxonNodeRank SUPERPHYLUM

PHYLUM

public static NCBITaxonNodeRank PHYLUM

SUBPHYLUM

public static NCBITaxonNodeRank SUBPHYLUM

SUPERCLASS

public static NCBITaxonNodeRank SUPERCLASS

CLASS

public static NCBITaxonNodeRank CLASS

SUBCLASS

public static NCBITaxonNodeRank SUBCLASS

INFRACLASS

public static NCBITaxonNodeRank INFRACLASS

COHORT

public static NCBITaxonNodeRank COHORT

SUBCOHORT

public static NCBITaxonNodeRank SUBCOHORT

SUPERORDER

public static NCBITaxonNodeRank SUPERORDER

ORDER

public static NCBITaxonNodeRank ORDER

SUBORDER

public static NCBITaxonNodeRank SUBORDER

PARVORDER

public static NCBITaxonNodeRank PARVORDER

INFRAORDER

public static NCBITaxonNodeRank INFRAORDER

SUPERFAMILY

public static NCBITaxonNodeRank SUPERFAMILY

FAMILY

public static NCBITaxonNodeRank FAMILY

SUBFAMILY

public static NCBITaxonNodeRank SUBFAMILY

TRIBE

public static NCBITaxonNodeRank TRIBE

SUBTRIBE

public static NCBITaxonNodeRank SUBTRIBE

GENUS

public static NCBITaxonNodeRank GENUS

SUBGENUS

public static NCBITaxonNodeRank SUBGENUS

SPECIES_GROUP

public static NCBITaxonNodeRank SPECIES_GROUP

SPECIES_SUBGROUP

public static NCBITaxonNodeRank SPECIES_SUBGROUP

SPECIES

public static NCBITaxonNodeRank SPECIES

SUBSPECIES

public static NCBITaxonNodeRank SUBSPECIES

STRAIN

public static NCBITaxonNodeRank STRAIN

VARIETAS

public static NCBITaxonNodeRank VARIETAS

SUBVARIETY

public static NCBITaxonNodeRank SUBVARIETY

FORMA

public static NCBITaxonNodeRank FORMA

FORMA_SPECIALIS

public static NCBITaxonNodeRank FORMA_SPECIALIS

SEROGROUP

public static NCBITaxonNodeRank SEROGROUP

SEROTYPE

public static NCBITaxonNodeRank SEROTYPE

CLADE

public static NCBITaxonNodeRank CLADE

MORPH

public static NCBITaxonNodeRank MORPH

BIOTYPE

public static NCBITaxonNodeRank BIOTYPE

GENOTYPE

public static NCBITaxonNodeRank GENOTYPE

ISOLATE

public static NCBITaxonNodeRank ISOLATE

SECTION

public static NCBITaxonNodeRank SECTION

SUBSECTION

public static NCBITaxonNodeRank SUBSECTION

SERIES

public static NCBITaxonNodeRank SERIES

PATHOGROUP

public static NCBITaxonNodeRank PATHOGROUP

NO_RANK

public static NCBITaxonNodeRank NO_RANK

Method Detail

values

public static Collection<NCBITaxonNodeRank> values()

valueOf

public static NCBITaxonNodeRank valueOf(String inValue)

compareTo

public int compareTo(NCBITaxonNodeRank inObj)

Specified by:

compareTo in interface Comparable<NCBITaxonNodeRank>

name

public String name()

toString

public String toString()

The same as name().

Overrides:

toString in class Object