Serialized Form (com.hfg API Documentation)

Package com.hfg.bio
- Class com.hfg.bio.InvalidResidueException extends RuntimeException implements Serializable
- Class com.hfg.bio.Strand extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mSymbol
```
char mSymbol
```
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
Package com.hfg.bio.seq
- Class com.hfg.bio.seq.SeqTopology extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
Package com.hfg.bio.seq.alignment
- Class com.hfg.bio.seq.alignment.KMerBitSet extends BitSet implements Serializable
  - Serialized Fields
    - mSeqType
```
BioSequenceType mSeqType
```
    - mKMerSize
```
int mKMerSize
```
    - mResidueIndexLookup
```
int[] mResidueIndexLookup
```
    - mUnknownResidueIndex
```
int mUnknownResidueIndex
```
Package com.hfg.bio.seq.alignment.blast
- Class com.hfg.bio.seq.alignment.blast.BLAST_Database extends File implements Serializable
  - Serialized Fields
    - mType
```
BioSequenceType mType
```
    - mDescription
```
String mDescription
```
    - mCacheDate
```
Date mCacheDate
```
    - mNumSequences
```
Integer mNumSequences
```
Package com.hfg.bio.seq.format
- Class com.hfg.bio.seq.format.EMBL_DataClass extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mCode
```
String mCode
```
- Class com.hfg.bio.seq.format.SeqFormatException extends SeqIOException implements Serializable
- Class com.hfg.bio.seq.format.SeqIOException extends RuntimeException implements Serializable
Package com.hfg.bio.seq.format.feature.qualifier
- Class com.hfg.bio.seq.format.feature.qualifier.MolType extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIsValid
```
boolean mIsValid
```
Package com.hfg.bio.seq.format.genbank
- Class com.hfg.bio.seq.format.genbank.InvalidGenBankKeywordException extends SeqIOException implements Serializable
- Class com.hfg.bio.seq.format.genbank.InvalidGenBankSubkeywordException extends SeqFormatException implements Serializable
Package com.hfg.bio.seq.genomic.assembly
- Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyReleaseType extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicPairedAssemblyComparison extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicRefSeqCategory extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicRelationToTypeMaterial extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.bio.seq.genomic.assembly.GenomicRepresentation extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
Package com.hfg.bio.seq.pattern
- Class com.hfg.bio.seq.pattern.SeqPatternConfigurationException extends RuntimeException implements Serializable
Package com.hfg.bio.seq.translation
- Class com.hfg.bio.seq.translation.TranslationException extends RuntimeException implements Serializable
Package com.hfg.bio.taxonomy.ncbi
- Class com.hfg.bio.taxonomy.ncbi.NCBIGenBankDivision extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mCode
```
String mCode
```
    - mId
```
Integer mId
```
- Class com.hfg.bio.taxonomy.ncbi.NCBITaxonNameClass extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
- Class com.hfg.bio.taxonomy.ncbi.NCBITaxonNodeRank extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mRank
```
int mRank
```
Package com.hfg.bio.taxonomy.uniprot
- Class com.hfg.bio.taxonomy.uniprot.EMBL_TaxonDivision extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mCode
```
String mCode
```
Package com.hfg.chem
- Class com.hfg.chem.ChemicalFormulaParseException extends RuntimeException implements Serializable
- Class com.hfg.chem.MolecularStructureException extends RuntimeException implements Serializable
Package com.hfg.chem.format
- Class com.hfg.chem.format.ChemIOException extends RuntimeException implements Serializable
- Class com.hfg.chem.format.SMILES_ParseException extends ChemIOException implements Serializable
Package com.hfg.css
- Class com.hfg.css.CSSException extends RuntimeException implements Serializable
Package com.hfg.datetime
- Class com.hfg.datetime.DateSortDirection extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.datetime.ThreadSafeDateFormat extends SimpleDateFormat implements Serializable
  - Serialized Fields
    - mDateFormat
```
ThreadLocal<T> mDateFormat
```
Package com.hfg.exception
- Class com.hfg.exception.CompressionException extends RuntimeException implements Serializable
- Class com.hfg.exception.ConfigurationException extends RuntimeException implements Serializable
- Class com.hfg.exception.DataIntegrityException extends RuntimeException implements Serializable
- Class com.hfg.exception.DataParsingException extends RuntimeException implements Serializable
- Class com.hfg.exception.InsufficientConfigurationException extends ConfigurationException implements Serializable
- Class com.hfg.exception.InvalidValueException extends RuntimeException implements Serializable
- Class com.hfg.exception.LowMemoryException extends RuntimeException implements Serializable
- Class com.hfg.exception.ProgrammingException extends RuntimeException implements Serializable
- Class com.hfg.exception.UnimplementedFunctionalityException extends RuntimeException implements Serializable
- Class com.hfg.exception.UnimplementedMethodException extends RuntimeException implements Serializable
- Class com.hfg.exception.UnmodifyableObjectException extends RuntimeException implements Serializable
- Class com.hfg.exception.UnsupportedMethodException extends RuntimeException implements Serializable
- Class com.hfg.exception.UserInputException extends RuntimeException implements Serializable
Package com.hfg.graphics
- Class com.hfg.graphics.BorderType extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.graphics.Gene2D extends Rectangle implements Serializable
  - Serialized Fields
    - mId
```
String mId
```
    - mDescription
```
String mDescription
```
    - mURLs
```
List<E> mURLs
```
    - mStartLocation
```
int mStartLocation
```
    - mEndLocation
```
int mEndLocation
```
    - mStrand
```
Strand mStrand
```
    - mExons
```
List<E> mExons
```
    - mSpecies
```
NCBITaxon mSpecies
```
    - mSeqMappingCoverage
```
SeqMappingCoverage mSeqMappingCoverage
```
    - mDisplayStart
```
int mDisplayStart
```
    - mDisplayEnd
```
int mDisplayEnd
```
    - mInDisplayRegion
```
boolean mInDisplayRegion
```
    - mShowId
```
boolean mShowId
```
    - mLabelWidthInPixels
```
int mLabelWidthInPixels
```
    - mColor
```
Color mColor
```
    - mLabelFont
```
Font mLabelFont
```
    - mXScalingFactor
```
double mXScalingFactor
```
    - mHeightInPixels
```
int mHeightInPixels
```
- Class com.hfg.graphics.Track extends Rectangle implements Serializable
  - Serialized Fields
    - mName
```
String mName
```
    - mDescription
```
String mDescription
```
    - mURL
```
String mURL
```
    - mForwardGenes
```
List<E> mForwardGenes
```
    - mReverseGenes
```
List<E> mReverseGenes
```
    - mHighlightRegions
```
List<E> mHighlightRegions
```
    - mShowId
```
Boolean mShowId
```
    - mShowSpeciesInTooltip
```
boolean mShowSpeciesInTooltip
```
    - mShowLocationInTooltip
```
boolean mShowLocationInTooltip
```
    - mBackgroundColor
```
Color mBackgroundColor
```
    - mAxisColor
```
Color mAxisColor
```
    - mLabelColor
```
Color mLabelColor
```
    - mHighlightColor
```
Color mHighlightColor
```
    - mLabelFont
```
Font mLabelFont
```
    - mXAxisStartValue
```
int mXAxisStartValue
```
    - mXAxisEndValue
```
int mXAxisEndValue
```
    - mXScalingFactor
```
double mXScalingFactor
```
    - mForwardLineMap
```
Map<K,V> mForwardLineMap
```
    - mReverseLineMap
```
Map<K,V> mReverseLineMap
```
    - mNumForwardLines
```
int mNumForwardLines
```
    - mNumReverseLines
```
int mNumReverseLines
```
    - mForwardLineHeights
```
List<E> mForwardLineHeights
```
    - mReverseLineHeights
```
List<E> mReverseLineHeights
```
    - mImageWidthInPixels
```
int mImageWidthInPixels
```
    - mForwardImageHeightInPixels
```
int mForwardImageHeightInPixels
```
    - mReverseImageHeightInPixels
```
int mReverseImageHeightInPixels
```
    - mLineHeightInPixels
```
int mLineHeightInPixels
```
    - mLinePaddingInPixels
```
int mLinePaddingInPixels
```
    - mDescriptionWidthInPixels
```
int mDescriptionWidthInPixels
```
    - mMinimumBufferInPixels
```
int mMinimumBufferInPixels
```
    - mRightBufferInPixels
```
int mRightBufferInPixels
```
    - mXAxisImageHeightInPixels
```
int mXAxisImageHeightInPixels
```
    - mMajorTickStep
```
int mMajorTickStep
```
    - mMinorTickStep
```
int mMinorTickStep
```
    - mForwardImageMap
```
ImageMap mForwardImageMap
```
    - mReverseImageMap
```
ImageMap mReverseImageMap
```
    - mJavascript
```
Script mJavascript
```
- Class com.hfg.graphics.Track2D extends Rectangle implements Serializable
  - Serialized Fields
    - mName
```
String mName
```
    - mDescription
```
String mDescription
```
    - mURL
```
String mURL
```
    - mForwardGenes
```
List<E> mForwardGenes
```
    - mReverseGenes
```
List<E> mReverseGenes
```
    - mHighlightRegions
```
List<E> mHighlightRegions
```
    - mShowId
```
Boolean mShowId
```
    - mShowSpeciesInTooltip
```
boolean mShowSpeciesInTooltip
```
    - mShowLocationInTooltip
```
boolean mShowLocationInTooltip
```
    - mPctIdColorScale
```
ColorScale mPctIdColorScale
```
    - mBackgroundColor
```
Color mBackgroundColor
```
    - mAxisColor
```
Color mAxisColor
```
    - mLabelColor
```
Color mLabelColor
```
    - mHighlightColor
```
Color mHighlightColor
```
    - mLabelFont
```
Font mLabelFont
```
    - mXAxisStartValue
```
int mXAxisStartValue
```
    - mXAxisEndValue
```
int mXAxisEndValue
```
    - mXScalingFactor
```
double mXScalingFactor
```
    - mForwardLineMap
```
Map<K,V> mForwardLineMap
```
    - mReverseLineMap
```
Map<K,V> mReverseLineMap
```
    - mNumForwardLines
```
int mNumForwardLines
```
    - mNumReverseLines
```
int mNumReverseLines
```
    - mForwardLineHeights
```
List<E> mForwardLineHeights
```
    - mReverseLineHeights
```
List<E> mReverseLineHeights
```
    - mImageWidthInPixels
```
int mImageWidthInPixels
```
    - mForwardImageHeightInPixels
```
int mForwardImageHeightInPixels
```
    - mReverseImageHeightInPixels
```
int mReverseImageHeightInPixels
```
    - mLineHeightInPixels
```
int mLineHeightInPixels
```
    - mLinePaddingInPixels
```
int mLinePaddingInPixels
```
    - mDescriptionWidthInPixels
```
int mDescriptionWidthInPixels
```
    - mMinimumBufferInPixels
```
int mMinimumBufferInPixels
```
    - mRightBufferInPixels
```
int mRightBufferInPixels
```
    - mXAxisImageHeightInPixels
```
int mXAxisImageHeightInPixels
```
    - mMajorTickStep
```
int mMajorTickStep
```
    - mMinorTickStep
```
int mMinorTickStep
```
    - mForwardImageMap
```
ImageMap mForwardImageMap
```
    - mReverseImageMap
```
ImageMap mReverseImageMap
```
    - mJavascript
```
Script mJavascript
```
Package com.hfg.html
- Class com.hfg.html.HTMLParseException extends RuntimeException implements Serializable
Package com.hfg.html.attribute
- Class com.hfg.html.attribute.Align extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.html.attribute.HTMLColor extends Color implements Serializable
  - Serialized Fields
    - mName
```
String mName
```
- Class com.hfg.html.attribute.Shape extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
- Class com.hfg.html.attribute.VAlign extends Object implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      This method is called after de-serialization, allowing the object to nominate a replacement object to be used in the output graph instead of this object. We don't want multiple objects of each type to exist in a target VM, so instances replace themselves with local objects.
  - Serialized Fields
    - mName
```
String mName
```
    - mIndex
```
int mIndex
```
Package com.hfg.javascript
- Class com.hfg.javascript.JsArray extends ArrayList<Object> implements Serializable
- Class com.hfg.javascript.JsObjMap extends OrderedMap<String,Object> implements Serializable
  - Serialized Fields
    - mUnquotedValueKeys
```
Set<E> mUnquotedValueKeys
```
Package com.hfg.javascript.ext
- Class com.hfg.javascript.ext.ExtGridColList extends ArrayList<ExtGridCol> implements Serializable
  - Serialized Fields
    - mName
```
String mName
```
Package com.hfg.ldap
- Class com.hfg.ldap.LDAP_Exception extends RuntimeException implements Serializable
Package com.hfg.math
- Class com.hfg.math.Counter extends Number implements Serializable
  - Serialized Fields
    - mValue
```
int mValue
```
- Class com.hfg.math.RomanNumeral extends Number implements Serializable
  - Serialized Fields
    - mString
```
String mString
```
    - mValue
```
int mValue
```
Package com.hfg.sql.jdbc
- Class com.hfg.sql.jdbc.JDBCException extends RuntimeException implements Serializable
- Class com.hfg.sql.jdbc.NoAvailableConnectionException extends JDBCException implements Serializable
Package com.hfg.svg
- Class com.hfg.svg.SvgException extends RuntimeException implements Serializable
Package com.hfg.svg.path
- Class com.hfg.svg.path.SvgPathDataException extends SvgException implements Serializable
Package com.hfg.units
- Class com.hfg.units.UnitException extends RuntimeException implements Serializable
- Class com.hfg.units.UnitParseException extends UnitException implements Serializable
Package com.hfg.util
- Class com.hfg.util.ExecutorException extends RuntimeException implements Serializable
Package com.hfg.util.collection
- Class com.hfg.util.collection.BiHashMap extends HashMap<K,V> implements Serializable
  - Serialized Fields
    - mReverseMap
```
Map<K,V> mReverseMap
```
- Class com.hfg.util.collection.DirtyList extends ArrayList<T> implements Serializable
  - Serialized Fields
    - mIsDirty
```
boolean mIsDirty
```
- Class com.hfg.util.collection.DirtyMap extends HashMap<K,V> implements Serializable
  - Serialized Fields
    - mIsDirty
```
boolean mIsDirty
```
    - mDirtyKeySet
```
Set<E> mDirtyKeySet
```
- Class com.hfg.util.collection.DirtyProperties extends Properties implements Serializable
  - Serialized Fields
    - mIsDirty
```
boolean mIsDirty
```
    - mDirtyProperties
```
HashSet<E> mDirtyProperties
```
- Class com.hfg.util.collection.OrderedMap extends HashMap<K,V> implements Serializable
  - Serialized Fields
    - mOrderedKeys
```
OrderedSet<E> mOrderedKeys
```
- Class com.hfg.util.collection.OrderedSet extends ArrayList<E> implements Serializable
- Class com.hfg.util.collection.SortedList extends ArrayList<T extends Comparable<T>> implements Serializable
Package com.hfg.util.io
- Class com.hfg.util.io.RuntimeIOException extends RuntimeException implements Serializable
Package com.hfg.util.mime
- Class com.hfg.util.mime.MimeException extends RuntimeException implements Serializable
Package com.hfg.webapp
- Class com.hfg.webapp.HfgCookie extends javax.servlet.http.Cookie implements Serializable
  - Serialized Fields
    - mExpires
```
Date mExpires
```
    - mDecodedValue
```
String mDecodedValue
```
Package com.hfg.webapp.filter.auth
- Class com.hfg.webapp.filter.auth.InvalidDomainException extends RuntimeException implements Serializable
Package com.hfg.xml
- Class com.hfg.xml.XMLException extends RuntimeException implements Serializable
- Class com.hfg.xml.XMLNamespaceSet extends HashSet<XMLNamespace> implements Serializable
  - Serialized Fields
    - mDefaultNamespace
```
XMLNamespace mDefaultNamespace
```
Package com.hfg.xml.msoffice2003.spreadsheetml
- Class com.hfg.xml.msoffice2003.spreadsheetml.ExcelFormatException extends RuntimeException implements Serializable
Package com.hfg.xml.msofficexml
- Class com.hfg.xml.msofficexml.OfficeOpenXmlException extends RuntimeException implements Serializable
Package com.hfg.xml.msofficexml.docx
- Class com.hfg.xml.msofficexml.docx.DocxException extends RuntimeException implements Serializable
Package com.hfg.xml.msofficexml.xlsx
- Class com.hfg.xml.msofficexml.xlsx.ExcelIndexedColor extends Color implements Serializable
  - Serialized Fields
    - mIndex
```
int mIndex
```
    - mName
```
String mName
```

Serialized Form

Package com.hfg.bio

Class com.hfg.bio.InvalidResidueException extends RuntimeException implements Serializable

Class com.hfg.bio.Strand extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mSymbol

mName

mIndex

Package com.hfg.bio.seq

Class com.hfg.bio.seq.SeqTopology extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

Package com.hfg.bio.seq.alignment

Class com.hfg.bio.seq.alignment.KMerBitSet extends BitSet implements Serializable

Serialized Fields

mSeqType

mKMerSize

mResidueIndexLookup

mUnknownResidueIndex

Package com.hfg.bio.seq.alignment.blast

Class com.hfg.bio.seq.alignment.blast.BLAST_Database extends File implements Serializable

Serialized Fields

mType

mDescription

mCacheDate

mNumSequences

Package com.hfg.bio.seq.format

Class com.hfg.bio.seq.format.EMBL_DataClass extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mCode

Class com.hfg.bio.seq.format.SeqFormatException extends SeqIOException implements Serializable

Class com.hfg.bio.seq.format.SeqIOException extends RuntimeException implements Serializable

Package com.hfg.bio.seq.format.feature.qualifier

Class com.hfg.bio.seq.format.feature.qualifier.MolType extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIsValid

Package com.hfg.bio.seq.format.genbank

Class com.hfg.bio.seq.format.genbank.InvalidGenBankKeywordException extends SeqIOException implements Serializable

Class com.hfg.bio.seq.format.genbank.InvalidGenBankSubkeywordException extends SeqFormatException implements Serializable

Package com.hfg.bio.seq.genomic.assembly

Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyLevel extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIndex

Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyReleaseType extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIndex

Class com.hfg.bio.seq.genomic.assembly.GenomicAssemblyVersionStatus extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIndex

Class com.hfg.bio.seq.genomic.assembly.GenomicPairedAssemblyComparison extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIndex

Class com.hfg.bio.seq.genomic.assembly.GenomicRefSeqCategory extends Object implements Serializable

Serialization Methods

readResolve

Serialized Fields

mName

mIndex