Glycan (com.hfg API Documentation)

java.lang.Object
- com.hfg.chem.Molecule
- - com.hfg.bio.glyco.Glycan

All Implemented Interfaces:

Matter, HfgXMLSerializable, Cloneable, Comparable
```
public class Glycan
extends Molecule
```
Common mammalian polysaccharide structures. Masses / elemental compositions for glycans are for intact structures. A water is removed when a glycan is attached to a protein.

Field Summary

Fields
Modifier and Type	Field and Description
`static Glycan`	`A1G0`
`static Glycan`	`A1G0F`
`static Glycan`	`A1G0M4F`
`static Glycan`	`A1G1F`
`static Glycan`	`A1G1M4F`
`static Glycan`	`A1G1M5F`
`static Glycan`	`A1S1M4F`
`static Glycan`	`A2G0`
`static Glycan`	`A2G0F`
`static Glycan`	`A2G0M4F`
`static Glycan`	`A2G1`
`static Glycan`	`A2G1F`
`static Glycan`	`A2G2`
`static Glycan`	`A2G2F`
`static Glycan`	`A2S1G0F`
`static Glycan`	`A2S1G1`
`static Glycan`	`A2S1G1F`
`static Glycan`	`A2S2`
`static Glycan`	`A2S2F`
`static Glycan`	`A3G0`
`static Glycan`	`A3G0F`
`static Glycan`	`A3G1`
`static Glycan`	`A3G1F`
`static Glycan`	`A3G2`
`static Glycan`	`A3G2F`
`static Glycan`	`A3G3`
`static Glycan`	`A3G3F`
`static Glycan`	`A3S1G2`
`static Glycan`	`A3S1G2F`
`static Glycan`	`A3S2G1`
`static Glycan`	`A3S2G1F`
`static Glycan`	`A3S3`
`static Glycan`	`A3S3F`
`static Glycan`	`M3`
`static Glycan`	`M3F`
`static Glycan`	`M4`
`static Glycan`	`M5`
`static Glycan`	`M6`
`static Glycan`	`M7`
`static Glycan`	`M8`
`static Glycan`	`M9`

Fields inherited from class com.hfg.chem.Molecule
H2O, mLocked, NaCl, NH3

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`Glycan`	`add(Monosaccharide inMonosaccharide, int inCount)`
`int`	`compareTo(Object inObj2)`
`String`	`getAbbrev()`
`List<IonizableGroup>`	`getKas()` Returns a List of IonizableGroup objects.
`Glycan`	`lock()`
`String`	`name()`
`void`	`register()` Puts the Glycan into the Set of unique Glycans returned by Glycan.values().
`String`	`toString()`
`SVG`	`toSVG()`
`static Glycan`	`valueOf(String inString)`
`static Glycan[]`	`values()`

Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

A2G0
```
public static Glycan A2G0
```

A2G0F
```
public static Glycan A2G0F
```

A2G1
```
public static Glycan A2G1
```

A2G1F
```
public static Glycan A2G1F
```

A2G2
```
public static Glycan A2G2
```

A2G2F
```
public static Glycan A2G2F
```

A2S1G0F
```
public static Glycan A2S1G0F
```

A2S1G1
```
public static Glycan A2S1G1
```

A2S1G1F
```
public static Glycan A2S1G1F
```

A2S2
```
public static Glycan A2S2
```

A3G0
```
public static Glycan A3G0
```

A3G0F
```
public static Glycan A3G0F
```

A3G1
```
public static Glycan A3G1
```

A3G1F
```
public static Glycan A3G1F
```

A3G2
```
public static Glycan A3G2
```

A3G2F
```
public static Glycan A3G2F
```

A3S1G2
```
public static Glycan A3S1G2
```

A3G3
```
public static Glycan A3G3
```

A3S3
```
public static Glycan A3S3
```

A3S2G1
```
public static Glycan A3S2G1
```

M3F
```
public static Glycan M3F
```

A1G0
```
public static Glycan A1G0
```

A1G0F
```
public static Glycan A1G0F
```

A1G0M4F
```
public static Glycan A1G0M4F
```

A1G1F
```
public static Glycan A1G1F
```

A1G1M4F
```
public static Glycan A1G1M4F
```

A1G1M5F
```
public static Glycan A1G1M5F
```

A1S1M4F
```
public static Glycan A1S1M4F
```

A2G0M4F
```
public static Glycan A2G0M4F
```

A2S2F
```
public static Glycan A2S2F
```

A3G3F
```
public static Glycan A3G3F
```

A3S1G2F
```
public static Glycan A3S1G2F
```

A3S2G1F
```
public static Glycan A3S2G1F
```

A3S3F
```
public static Glycan A3S3F
```

M3
```
public static Glycan M3
```

M4
```
public static Glycan M4
```

M5
```
public static Glycan M5
```

M6
```
public static Glycan M6
```

M7
```
public static Glycan M7
```

M8
```
public static Glycan M8
```

M9
```
public static Glycan M9
```

Method Detail
- valueOf
```
public static Glycan valueOf(String inString)
```
- values
```
public static Glycan[] values()
```
- register
```
public void register()
```
  Puts the Glycan into the Set of unique Glycans returned by Glycan.values().
- compareTo
```
public int compareTo(Object inObj2)
```
  Specified by:
  
  compareTo in interface Comparable
  
  Overrides:
  
  compareTo in class Molecule
- lock
```
public Glycan lock()
```
  Overrides:
  
  lock in class Molecule
- name
```
public String name()
```
  Overrides:
  
  name in class Molecule
- getAbbrev
```
public String getAbbrev()
```
- toString
```
public String toString()
```
  Overrides:
  
  toString in class Molecule
- toSVG
```
public SVG toSVG()
```
- add
```
public Glycan add(Monosaccharide inMonosaccharide,
                  int inCount)
```
- getKas
```
public List<IonizableGroup> getKas()
```
  Returns a List of IonizableGroup objects.
  
  Overrides:
  
  getKas in class Molecule
  
  Returns:
  
  List of IonizableGroups

Class Glycan

Field Summary

Fields inherited from class com.hfg.chem.Molecule

Method Summary

Methods inherited from class com.hfg.chem.Molecule

Methods inherited from class java.lang.Object

Field Detail

A2G0

A2G0F

A2G1

A2G1F

A2G2

A2G2F

A2S1G0F

A2S1G1

A2S1G1F

A2S2

A3G0

A3G0F

A3G1

A3G1F

A3G2

A3G2F

A3S1G2

A3G3

A3S3

A3S2G1

M3F

A1G0

A1G0F

A1G0M4F

A1G1F

A1G1M4F

A1G1M5F

A1S1M4F

A2G0M4F

A2S2F

A3G3F

A3S1G2F

A3S2G1F

A3S3F

M3

M4

M5

M6

M7

M8

M9

Method Detail

valueOf

values

register

compareTo

lock

name

getAbbrev

toString

toSVG

add

getKas