Package com.hfg.bio.seq.pattern

Interface Summary

Interface	Description
SeqPatternMatcher<S extends BioSequence,T extends SeqPatternMatch>

Class Summary

Class	Description
NucleotidePattern<T extends NucleotidePatternMatch>	Container for a nucleotide pattern (motif).
NucleotidePatternMatch	Container for a nucleotide pattern match.
PrositePatternPosition	Prosite pattern position.
ProteinPattern	Container for a protein pattern (motif).
ProteinPatternMatch	Container for a protein pattern match.
ProteinPatternMatcher	Examines a query sequence to find instances of the specified patterns.
SeqPattern<S extends BioSequence,T extends SeqPatternMatch>	Abstract container for a sequence pattern (motif).
SeqPatternMatch	Container for a sequence pattern match.

Enum Summary

Enum	Description
PrositePatternPositionType	Type enumeration for Prosite pattern positions.

Exception Summary

Exception	Description
SeqPatternConfigurationException	Indicates a problem during the configuration of a sequence pattern.