com.hfg.bio.seq.format.feature.uniprot

Class UniProtFeatureKey

java.lang.Object

com.hfg.bio.seq.format.feature.uniprot.UniProtFeatureKey

All Implemented Interfaces:

FeatureKey

public class UniProtFeatureKey
extends Object
implements FeatureKey

UniProt feature table keys for flat-file records.

Values from http://web.expasy.org/docs/userman.html#FT_line

Field Summary

Fields

Modifier and Type	Field and Description
static UniProtFeatureKey	ACT_SITE
static UniProtFeatureKey	BINDING
static UniProtFeatureKey	CA_BIND
static UniProtFeatureKey	CARBOHYD
static UniProtFeatureKey	CHAIN
static UniProtFeatureKey	COILED
static UniProtFeatureKey	COMPBIAS
static UniProtFeatureKey	CONFLICT
static UniProtFeatureKey	CROSSLNK
static UniProtFeatureKey	DISULFID
static UniProtFeatureKey	DNA_BIND
static UniProtFeatureKey	DOMAIN
static UniProtFeatureKey	HELIX
static UniProtFeatureKey	INIT_MET
static UniProtFeatureKey	INTRAMEM
static UniProtFeatureKey	LIPID
static UniProtFeatureKey	METAL
static UniProtFeatureKey	MOD_RES
static UniProtFeatureKey	MOTIF
static UniProtFeatureKey	MUTAGEN
static UniProtFeatureKey	NON_CONS
static UniProtFeatureKey	NON_STD
static UniProtFeatureKey	NON_TER
static UniProtFeatureKey	NP_BIND
static UniProtFeatureKey	PEPTIDE
static UniProtFeatureKey	PROPEP
static UniProtFeatureKey	REGION
static UniProtFeatureKey	REPEAT
static UniProtFeatureKey	SIGNAL
static UniProtFeatureKey	SITE
static UniProtFeatureKey	STRAND
static UniProtFeatureKey	TOPO_DOM
static UniProtFeatureKey	TRANSIT
static UniProtFeatureKey	TRANSMEM
static UniProtFeatureKey	TURN
static UniProtFeatureKey	UNSURE
static UniProtFeatureKey	VAR_SEQ
static UniProtFeatureKey	VARIANT
static UniProtFeatureKey	ZN_FING

Method Summary

Modifier and Type	Method and Description
String	getDescription()
String	name()
String	toString()
static UniProtFeatureKey	valueOf(String inValue)
static Collection<UniProtFeatureKey>	values()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ACT_SITE

public static final UniProtFeatureKey ACT_SITE

BINDING

public static final UniProtFeatureKey BINDING

CA_BIND

public static final UniProtFeatureKey CA_BIND

CARBOHYD

public static final UniProtFeatureKey CARBOHYD

CHAIN

public static final UniProtFeatureKey CHAIN

COILED

public static final UniProtFeatureKey COILED

COMPBIAS

public static final UniProtFeatureKey COMPBIAS

CONFLICT

public static final UniProtFeatureKey CONFLICT

CROSSLNK

public static final UniProtFeatureKey CROSSLNK

DISULFID

public static final UniProtFeatureKey DISULFID

DNA_BIND

public static final UniProtFeatureKey DNA_BIND

DOMAIN

public static final UniProtFeatureKey DOMAIN

HELIX

public static final UniProtFeatureKey HELIX

INIT_MET

public static final UniProtFeatureKey INIT_MET

INTRAMEM

public static final UniProtFeatureKey INTRAMEM

LIPID

public static final UniProtFeatureKey LIPID

METAL

public static final UniProtFeatureKey METAL

MOD_RES

public static final UniProtFeatureKey MOD_RES

MOTIF

public static final UniProtFeatureKey MOTIF

MUTAGEN

public static final UniProtFeatureKey MUTAGEN

NON_CONS

public static final UniProtFeatureKey NON_CONS

NON_STD

public static final UniProtFeatureKey NON_STD

NON_TER

public static final UniProtFeatureKey NON_TER

NP_BIND

public static final UniProtFeatureKey NP_BIND

PEPTIDE

public static final UniProtFeatureKey PEPTIDE

PROPEP

public static final UniProtFeatureKey PROPEP

REGION

public static final UniProtFeatureKey REGION

REPEAT

public static final UniProtFeatureKey REPEAT

SIGNAL

public static final UniProtFeatureKey SIGNAL

SITE

public static final UniProtFeatureKey SITE

STRAND

public static final UniProtFeatureKey STRAND

TOPO_DOM

public static final UniProtFeatureKey TOPO_DOM

TRANSIT

public static final UniProtFeatureKey TRANSIT

TRANSMEM

public static final UniProtFeatureKey TRANSMEM

TURN

public static final UniProtFeatureKey TURN

UNSURE

public static final UniProtFeatureKey UNSURE

VAR_SEQ

public static final UniProtFeatureKey VAR_SEQ

VARIANT

public static final UniProtFeatureKey VARIANT

ZN_FING

public static final UniProtFeatureKey ZN_FING

Method Detail

valueOf

public static UniProtFeatureKey valueOf(String inValue)

values

public static Collection<UniProtFeatureKey> values()

name

public String name()

Specified by:

name in interface FeatureKey

toString

public String toString()

Overrides:

toString in class Object

getDescription

public String getDescription()

Specified by:

getDescription in interface FeatureKey