| Interface | Description |
|---|---|
| DistanceMatrixModel |
Interface defining a distance matrix calculation method.
|
| TreeMethod |
Interface defining a method for phylogenetic tree construction.
|
| Class | Description |
|---|---|
| DistanceMatrix |
Simple distance matrix container.
|
| JukesCantorModel |
Implementation of the Jukes-Cantor distance matrix calculation model.
|
| NJ |
NJ (Neighbor-Joining) method of phylogenetic tree construction.
|
| PhylogeneticTree |
Object representation of a phylogenetic tree.
|
| PhyloNode |
Object representation of a node in a Newick format phylogenetic tree.
|
| TreeDisplaySettings |
Phylogenetic tree display options for use with NewickTree.
|
| UncorrectedModel |
Distance matrix calculation method that is simply the fraction of mismatches.
|
| UPGMA |
UPGMA (unweighted pair-group method using arithmetic averages) method of
phylogenetic tree construction.
|
| Enum | Description |
|---|---|
| CladogramStyle | |
| PhylogeneticTree.Flag |