| Interface | Description |
|---|---|
| AAGroupingScheme |
Interface for amino acid grouping schemes.
|
| Class | Description |
|---|---|
| AAGroup |
Amino acid group.
|
| AAGroupingSchemeImpl |
Base class for amino acid grouping schemes.
|
| AminoAcid |
Amino Acid.
|
| AminoAcidFreqTable |
Table of amino acid frequency data.
|
| AminoAcidSet |
Mapping of sequence characters to AminoAcids.
|
| CTerminalGroup |
C-terminal protein group.
|
| DbXref |
Simple container for a database cross-reference.
|
| DigestFragment |
Product of a proteolytic digest.
|
| DigestSettings |
Settings for protein digestion via protease(s).
|
| HfgBioXML |
XML tag and attribute names for bio classes.
|
| KaSet |
Encapsulation for a group of Ka (dissociation constant) values.
|
| NTerminalGroup |
N-terminal protein group.
|
| Nucleotide |
Nucleotide.
|
| Protease |
Chemical or biological proteolytic agent which can be used to theoretically
digest a Protein.
|
| StandardAAGroupingScheme |
Standard grouping of amino acids.
|
| Strand |
Enum-like sequence strand class
|
| Enum | Description |
|---|---|
| Nucleotide.BaseType | |
| pH |
Simple enumeration of pH ranges.
|
| PhysicalProperty |
Physical property names.
|
| ProteinAnalysisMode |
| Exception | Description |
|---|---|
| InvalidResidueException |
Indicates that the specified residue was not allowed.
|