Uses of Package
com.hfg.bio

Packages that use com.hfg.bio

Package	Description
com.hfg.bio
com.hfg.bio.proteinproperty	Classes for calculating physical properties of proteins.
com.hfg.bio.seq
com.hfg.bio.seq.alignment.matrix
com.hfg.bio.seq.format.abi
com.hfg.bio.seq.pattern
com.hfg.bio.seq.translation
com.hfg.chem
com.hfg.graphics

Classes in com.hfg.bio used by com.hfg.bio

Class and Description
AAGroup Amino acid group.
AAGroupingScheme Interface for amino acid grouping schemes.
AAGroupingSchemeImpl Base class for amino acid grouping schemes.
AminoAcid Amino Acid.
AminoAcidFreqTable Table of amino acid frequency data.
AminoAcidSet Mapping of sequence characters to AminoAcids.
CTerminalGroup C-terminal protein group.
DbXref Simple container for a database cross-reference.
DigestFragment Product of a proteolytic digest.
DigestSettings Settings for protein digestion via protease(s).
KaSet Encapsulation for a group of Ka (dissociation constant) values.
NTerminalGroup N-terminal protein group.
Nucleotide Nucleotide.
Nucleotide.BaseType
pH Simple enumeration of pH ranges.
PhysicalProperty Physical property names.
Protease Chemical or biological proteolytic agent which can be used to theoretically digest a Protein.
ProteinAnalysisMode
StandardAAGroupingScheme Standard grouping of amino acids.
Strand Enum-like sequence strand class

Classes in com.hfg.bio used by com.hfg.bio.proteinproperty

Class and Description
AminoAcid Amino Acid.
KaSet Encapsulation for a group of Ka (dissociation constant) values.

Classes in com.hfg.bio used by com.hfg.bio.seq

Class and Description
AminoAcid Amino Acid.
AminoAcidSet Mapping of sequence characters to AminoAcids.
DbXref Simple container for a database cross-reference.
DigestFragment Product of a proteolytic digest.
DigestSettings Settings for protein digestion via protease(s).
KaSet Encapsulation for a group of Ka (dissociation constant) values.
Strand Enum-like sequence strand class

Classes in com.hfg.bio used by com.hfg.bio.seq.alignment.matrix

Class and Description
AminoAcidFreqTable Table of amino acid frequency data.

Classes in com.hfg.bio used by com.hfg.bio.seq.format.abi

Class and Description
Nucleotide Nucleotide.

Classes in com.hfg.bio used by com.hfg.bio.seq.pattern

Class and Description
Strand Enum-like sequence strand class

Classes in com.hfg.bio used by com.hfg.bio.seq.translation

Class and Description
Strand Enum-like sequence strand class

Classes in com.hfg.bio used by com.hfg.chem

Class and Description
PhysicalProperty Physical property names.

Classes in com.hfg.bio used by com.hfg.graphics

Class and Description
Strand Enum-like sequence strand class