| Package | Description |
|---|---|
| com.hfg.bio | |
| com.hfg.bio.proteinproperty |
Classes for calculating physical properties of proteins.
|
| com.hfg.bio.seq | |
| com.hfg.bio.seq.alignment.matrix | |
| com.hfg.bio.seq.format.abi | |
| com.hfg.bio.seq.pattern | |
| com.hfg.bio.seq.translation | |
| com.hfg.chem | |
| com.hfg.graphics |
| Class and Description |
|---|
| AAGroup
Amino acid group.
|
| AAGroupingScheme
Interface for amino acid grouping schemes.
|
| AAGroupingSchemeImpl
Base class for amino acid grouping schemes.
|
| AminoAcid
Amino Acid.
|
| AminoAcidFreqTable
Table of amino acid frequency data.
|
| AminoAcidSet
Mapping of sequence characters to AminoAcids.
|
| CTerminalGroup
C-terminal protein group.
|
| DbXref
Simple container for a database cross-reference.
|
| DigestFragment
Product of a proteolytic digest.
|
| DigestSettings
Settings for protein digestion via protease(s).
|
| KaSet
Encapsulation for a group of Ka (dissociation constant) values.
|
| NTerminalGroup
N-terminal protein group.
|
| Nucleotide
Nucleotide.
|
| Nucleotide.BaseType |
| pH
Simple enumeration of pH ranges.
|
| PhysicalProperty
Physical property names.
|
| Protease
Chemical or biological proteolytic agent which can be used to theoretically
digest a Protein.
|
| ProteinAnalysisMode |
| StandardAAGroupingScheme
Standard grouping of amino acids.
|
| Strand
Enum-like sequence strand class
|
| Class and Description |
|---|
| AminoAcid
Amino Acid.
|
| KaSet
Encapsulation for a group of Ka (dissociation constant) values.
|
| Class and Description |
|---|
| AminoAcid
Amino Acid.
|
| AminoAcidSet
Mapping of sequence characters to AminoAcids.
|
| DbXref
Simple container for a database cross-reference.
|
| DigestFragment
Product of a proteolytic digest.
|
| DigestSettings
Settings for protein digestion via protease(s).
|
| KaSet
Encapsulation for a group of Ka (dissociation constant) values.
|
| Strand
Enum-like sequence strand class
|
| Class and Description |
|---|
| AminoAcidFreqTable
Table of amino acid frequency data.
|
| Class and Description |
|---|
| Nucleotide
Nucleotide.
|
| Class and Description |
|---|
| Strand
Enum-like sequence strand class
|
| Class and Description |
|---|
| Strand
Enum-like sequence strand class
|
| Class and Description |
|---|
| PhysicalProperty
Physical property names.
|
| Class and Description |
|---|
| Strand
Enum-like sequence strand class
|