Uses of Class
com.hfg.bio.Strand

Packages that use Strand

Package	Description
com.hfg.bio
com.hfg.bio.seq
com.hfg.bio.seq.pattern
com.hfg.bio.seq.translation
com.hfg.graphics

Uses of Strand in com.hfg.bio

Fields in com.hfg.bio declared as Strand

Modifier and Type	Field and Description
static Strand	Strand.ANITSENSE
static Strand	Strand.FORWARD
static Strand	Strand.MINUS
static Strand	Strand.PLUS
static Strand	Strand.REVERSE
static Strand	Strand.SENSE

Methods in com.hfg.bio that return Strand

Modifier and Type	Method and Description
static Strand	Strand.valueOf(String inValue)
static Strand[]	Strand.values()

Uses of Strand in com.hfg.bio.seq

Methods in com.hfg.bio.seq that return Strand

Modifier and Type	Method and Description
Strand	Exon.getStrand()
Strand	Gene.getStrand()
Strand	GenomicLocation.getStrand()

Methods in com.hfg.bio.seq with parameters of type Strand

Modifier and Type	Method and Description
void	Exon.setStrand(Strand inValue)
Gene	Gene.setStrand(Strand inValue)
GenomicLocation	GenomicLocation.setStrand(Strand inValue)

Constructors in com.hfg.bio.seq with parameters of type Strand

Constructor and Description
Exon(int inStart, int inEnd, Strand inStrand)

Uses of Strand in com.hfg.bio.seq.pattern

Methods in com.hfg.bio.seq.pattern that return Strand

Modifier and Type	Method and Description
Strand	NucleotidePatternMatch.getStrand()

Methods in com.hfg.bio.seq.pattern that return types with arguments of type Strand

Modifier and Type	Method and Description
Collection<Strand>	NucleotidePattern.getStrandsToSearch()

Methods in com.hfg.bio.seq.pattern with parameters of type Strand

Modifier and Type	Method and Description
NucleotidePatternMatch	NucleotidePatternMatch.setStrand(Strand inValue)
NucleotidePattern	NucleotidePattern.setStrandsToSearch(Strand inValue)
NucleotidePattern	NucleotidePattern.setStrandsToSearch(Strand[] inValues)

Uses of Strand in com.hfg.bio.seq.translation

Methods in com.hfg.bio.seq.translation that return Strand

Modifier and Type	Method and Description
Strand	TranslationFrame.getStrand()

Methods in com.hfg.bio.seq.translation with parameters of type Strand

Modifier and Type	Method and Description
static Collection<TranslationFrame>	TranslationFrame.values(Strand inStrand)

Uses of Strand in com.hfg.graphics

Methods in com.hfg.graphics that return Strand

Modifier and Type	Method and Description
Strand	Gene2D.getStrand()

Methods in com.hfg.graphics with parameters of type Strand

Modifier and Type	Method and Description
void	Track.draw(Graphics2D g2, Strand inStrand)
void	Track2D.draw(Graphics2D g2, Strand inStrand)
BufferedImage	Track.getBufferedImage(Strand inStrand)
BufferedImage	Track2D.getBufferedImage(Strand inStrand)
Image	Track.getImage(Strand inStrand)
Image	Track2D.getImage(Strand inStrand)
ImageMap	Track.getImageMap(Strand inStrand)
ImageMap	Track2D.getImageMap(Strand inStrand)
boolean	Track.hasGenesOnStrand(Strand inStrand)
boolean	Track2D.hasGenesOnStrand(Strand inStrand)
void	Gene2D.setStrand(Strand inValue)
XMLNode	Track2D.toSVG(Strand inStrand)
void	Track.writeImageAsJpeg(OutputStream inStream, Strand inStrand)
void	Track2D.writeImageAsJpeg(OutputStream inStream, Strand inStrand)
void	Track.writeImageAsPng(OutputStream inStream, Strand inStrand)
void	Track2D.writeImageAsPng(OutputStream inStream, Strand inStrand)
SVG	Track.writeImageAsSvg(Strand inStrand)