com.hfg.bio

Class HfgBioXML

java.lang.Object

com.hfg.bio.HfgBioXML

public class HfgBioXML
extends Object

XML tag and attribute names for bio classes.

Field Summary

Fields

Modifier and Type	Field and Description
static String	AA_ATT
static String	AA_GROUPING_SCHEME_TAG
static String	AA_TAG
static String	AASET_TAG
static String	ACCEPTOR_SITE_ATT
static String	ACCEPTOR_TAG
static String	ACCEPTORS_TAG
static String	ALIGNED_QUERY
static String	ALIGNED_SUBJECT
static String	ALIGNMENT
static String	ALIGNMENT_SCORING
static String	AMINO_ACIDS_TAG
static String	ASSEMBLY_ATT
static String	ATTRIBUTE_TAG
static String	ATTRIBUTES_TAG
static String	AVG_MASS_ATT
static String	BUILD_ATT
static String	C_TERM_AA_PKA_TAG
static String	C_TERM_ATT
static String	C_TERM_PKA_TAG
static String	CHAIN_ID_ATT
static String	CHAINS_TAG
static String	CHROMOSOME_ATT
static String	CLASS_ATT
static String	COMPARISON_LENGTH_ATT
static String	CONTIG_ATT
static String	CONTIG_LENGTH_ATT
static String	CTERM_TAG
static String	DEFAULT_ANALYSIS_MODE_ATT
static String	DESCRIPTION_TAG
static String	DISULFIDE_CNT_ATT
static String	DNA_TAG
static String	DONOR_SITE_ATT
static String	DONOR_TAG
static String	DONORS_TAG
static String	ELEMENTAL_COMP_TAG
static String	GENOMIC_LOC_TAG
static String	HFGBIOSEQ_TAG
static String	ID_ATT
static String	INTRON_TAG
static String	IS_APPROX_ATT
static String	IS_NULL_ATT
static String	KA_SET_TAG
static String	KAS_TAG
static String	LOCKED_ATT
static String	MAPPING_ATT
static String	MOL_TAG
static String	MONO_MASS_ATT
static String	MONOSACCHARIDE_ATT
static String	N_TERM_ATT
static String	N_TERM_PKA_TAG
static String	NAME_ATT
static String	NTERM_TAG
static String	NUM_IDENTITIES_ATT
static String	ONE_LTR_CODE_ATT
static String	PKA_TAG
static String	PROTEIN_ANALYSIS_MODE_TAG
static String	PROTEIN_TAG
static String	PROTONATED_FORM_ATT
static String	QUERY
static String	RESIDUE_ATT
static String	SCORE_ATT
static String	SEQ_LENGTH_ATT
static String	SHORT_NAME_ATT
static String	SIDECHAIN_KAS_TAG
static String	START_ATT
static String	STRAND_ATT
static String	STRAND_TAG
static String	SUBJECT
static String	TAXON_ATT
static String	THREE_LTR_CODE_ATT
static String	VALUE_ATT
static String	XLINK_TAG
static String	XLINK_TYPE_TAG
static String	XLINKS_TAG

Constructor Summary

Constructors

Constructor and Description
HfgBioXML()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

HFGBIOSEQ_TAG

public static final String HFGBIOSEQ_TAG

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Constant Field Values

DESCRIPTION_TAG

public static final String DESCRIPTION_TAG

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Constant Field Values

PROTEIN_TAG

public static final String PROTEIN_TAG

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Constant Field Values

CHAINS_TAG

public static final String CHAINS_TAG

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Constant Field Values

AASET_TAG

public static final String AASET_TAG

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Constant Field Values

AMINO_ACIDS_TAG

public static final String AMINO_ACIDS_TAG

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Constant Field Values

AA_TAG

public static final String AA_TAG

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Constant Field Values

NTERM_TAG

public static final String NTERM_TAG

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Constant Field Values

CTERM_TAG

public static final String CTERM_TAG

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Constant Field Values

MOL_TAG

public static final String MOL_TAG

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Constant Field Values

KAS_TAG

public static final String KAS_TAG

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Constant Field Values

SIDECHAIN_KAS_TAG

public static final String SIDECHAIN_KAS_TAG

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Constant Field Values

ELEMENTAL_COMP_TAG

public static final String ELEMENTAL_COMP_TAG

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Constant Field Values

XLINKS_TAG

public static final String XLINKS_TAG

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Constant Field Values

XLINK_TAG

public static final String XLINK_TAG

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Constant Field Values

XLINK_TYPE_TAG

public static final String XLINK_TYPE_TAG

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Constant Field Values

DONORS_TAG

public static final String DONORS_TAG

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Constant Field Values

ACCEPTORS_TAG

public static final String ACCEPTORS_TAG

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Constant Field Values

DONOR_TAG

public static final String DONOR_TAG

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Constant Field Values

ACCEPTOR_TAG

public static final String ACCEPTOR_TAG

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Constant Field Values

ATTRIBUTES_TAG

public static final String ATTRIBUTES_TAG

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Constant Field Values

ATTRIBUTE_TAG

public static final String ATTRIBUTE_TAG

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Constant Field Values

STRAND_TAG

public static final String STRAND_TAG

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Constant Field Values

GENOMIC_LOC_TAG

public static final String GENOMIC_LOC_TAG

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Constant Field Values

AA_GROUPING_SCHEME_TAG

public static final String AA_GROUPING_SCHEME_TAG

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Constant Field Values

ALIGNED_QUERY

public static final String ALIGNED_QUERY

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Constant Field Values

ALIGNED_SUBJECT

public static final String ALIGNED_SUBJECT

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Constant Field Values

ALIGNMENT

public static final String ALIGNMENT

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Constant Field Values

ALIGNMENT_SCORING

public static final String ALIGNMENT_SCORING

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Constant Field Values

QUERY

public static final String QUERY

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Constant Field Values

SUBJECT

public static final String SUBJECT

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Constant Field Values

KA_SET_TAG

public static final String KA_SET_TAG

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Constant Field Values

PKA_TAG

public static final String PKA_TAG

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Constant Field Values

N_TERM_PKA_TAG

public static final String N_TERM_PKA_TAG

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Constant Field Values

C_TERM_PKA_TAG

public static final String C_TERM_PKA_TAG

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Constant Field Values

C_TERM_AA_PKA_TAG

public static final String C_TERM_AA_PKA_TAG

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Constant Field Values

PROTEIN_ANALYSIS_MODE_TAG

public static final String PROTEIN_ANALYSIS_MODE_TAG

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Constant Field Values

INTRON_TAG

public static final String INTRON_TAG

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Constant Field Values

DNA_TAG

public static final String DNA_TAG

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Constant Field Values

AA_ATT

public static final String AA_ATT

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Constant Field Values

ASSEMBLY_ATT

public static final String ASSEMBLY_ATT

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Constant Field Values

BUILD_ATT

public static final String BUILD_ATT

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Constant Field Values

C_TERM_ATT

public static final String C_TERM_ATT

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Constant Field Values

CHROMOSOME_ATT

public static final String CHROMOSOME_ATT

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Constant Field Values

CLASS_ATT

public static final String CLASS_ATT

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Constant Field Values

CONTIG_ATT

public static final String CONTIG_ATT

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Constant Field Values

CONTIG_LENGTH_ATT

public static final String CONTIG_LENGTH_ATT

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Constant Field Values

ID_ATT

public static final String ID_ATT

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Constant Field Values

NAME_ATT

public static final String NAME_ATT

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Constant Field Values

MONO_MASS_ATT

public static final String MONO_MASS_ATT

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Constant Field Values

AVG_MASS_ATT

public static final String AVG_MASS_ATT

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Constant Field Values

SHORT_NAME_ATT

public static final String SHORT_NAME_ATT

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Constant Field Values

DEFAULT_ANALYSIS_MODE_ATT

public static final String DEFAULT_ANALYSIS_MODE_ATT

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Constant Field Values

DISULFIDE_CNT_ATT

public static final String DISULFIDE_CNT_ATT

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Constant Field Values

LOCKED_ATT

public static final String LOCKED_ATT

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Constant Field Values

MAPPING_ATT

public static final String MAPPING_ATT

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Constant Field Values

N_TERM_ATT

public static final String N_TERM_ATT

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Constant Field Values

THREE_LTR_CODE_ATT

public static final String THREE_LTR_CODE_ATT

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Constant Field Values

ONE_LTR_CODE_ATT

public static final String ONE_LTR_CODE_ATT

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Constant Field Values

IS_APPROX_ATT

public static final String IS_APPROX_ATT

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Constant Field Values

IS_NULL_ATT

public static final String IS_NULL_ATT

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Constant Field Values

CHAIN_ID_ATT

public static final String CHAIN_ID_ATT

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Constant Field Values

RESIDUE_ATT

public static final String RESIDUE_ATT

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Constant Field Values

SCORE_ATT

public static final String SCORE_ATT

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Constant Field Values

SEQ_LENGTH_ATT

public static final String SEQ_LENGTH_ATT

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Constant Field Values

START_ATT

public static final String START_ATT

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Constant Field Values

STRAND_ATT

public static final String STRAND_ATT

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Constant Field Values

COMPARISON_LENGTH_ATT

public static final String COMPARISON_LENGTH_ATT

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Constant Field Values

NUM_IDENTITIES_ATT

public static final String NUM_IDENTITIES_ATT

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Constant Field Values

PROTONATED_FORM_ATT

public static final String PROTONATED_FORM_ATT

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Constant Field Values

TAXON_ATT

public static final String TAXON_ATT

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Constant Field Values

VALUE_ATT

public static final String VALUE_ATT

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Constant Field Values

MONOSACCHARIDE_ATT

public static final String MONOSACCHARIDE_ATT

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Constant Field Values

DONOR_SITE_ATT

public static final String DONOR_SITE_ATT

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Constant Field Values

ACCEPTOR_SITE_ATT

public static final String ACCEPTOR_SITE_ATT

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Constant Field Values

Constructor Detail

HfgBioXML

public HfgBioXML()