| Interface | Description |
|---|---|
| ReadableSeqFormat<T extends BioSequence> |
Interface for readable sequence formats.
|
| SeqFormat |
Created by taylora on 9/24/14.
|
| WritableSeqFormat<T extends BioSequence> |
Interface for writable sequence formats.
|
| Class | Description |
|---|---|
| BufferedSeqReader<T extends BioSequence> |
Buffered sequence reader.
|
| EMBL<T extends BioSequence> |
EMBL sequence format.
|
| EMBL_DataClass |
Enumerated list of EMBL data class.
|
| FASTA<T extends BioSequence> |
FASTA sequence format.
|
| FASTQ<T extends NucleicAcid> |
FASTQ sequence format encompassing sequences and their per-base sequencing quality scores.
|
| GenBank<T extends BioSequence> |
GenBank sequence format.
|
| IlluminaFASTQ<T extends NucleicAcid> |
FASTQ sequence format from Illumina.
|
| ReadableSeqFormatBase<T extends BioSequence> |
Base class for readable sequence formats.
|
| SeqCitation |
A citation with sequence location information.
|
| WIPO_ST_25<T extends BioSequence> |
Sequence format based on WIPO Standard ST.25.
|
| Exception | Description |
|---|---|
| SeqFormatException |
Indicates an exception with the format of the sequence record being read.
|
| SeqIOException |
Indicates an exception during sequence I/O manipulation.
|