com.hfg.bio.seq.format

Class SeqCitation

java.lang.Object

com.hfg.citation.Citation

com.hfg.bio.seq.format.SeqCitation

Direct Known Subclasses:

MedlineCitation

public class SeqCitation
extends Citation

A citation with sequence location information.

Constructor Summary

Constructors

Constructor and Description
SeqCitation()

Method Summary

Modifier and Type	Method and Description
String	getContactInfo()
String	getPubMedId()
String	getRemark()
SeqLocation	getSeqLocation()
Date	getSubmissionDate()
SeqCitation	setArticleNumber(String inValue) Specify the article number for the citation source.
SeqCitation	setContactInfo(String inValue)
SeqCitation	setDOI(String inValue) Specifies the digital object identifier (DOI) for the citation.
SeqCitation	setISBN(String inValue) Specifies the international standard book number (ISBN) for the citation.
SeqCitation	setISSN(String inValue) Specifies the international standard serial number (ISSN) for the citation.
SeqCitation	setPubMedId(String inValue)
SeqCitation	setRemark(String inValue)
SeqCitation	setSeqLocation(SeqLocation inValue)
SeqCitation	setSubmissionDate(Date inValue)

Methods inherited from class com.hfg.citation.Citation

addAuthor, appendRawContent, getAbstract, getAccessDate, getArticleNumber, getAuthors, getCallNumber, getDOI, getInstitution, getISBN, getISSN, getIssue, getJournal, getLanguage, getMediaType, getNote, getPages, getPatentData, getPlaceOfPublication, getPublisher, getRepository, getSource, getTitle, getType, getURI, getURL, getVersion, getVolume, getWebsiteTitle, getYear, setAbstract, setAccessDate, setCallNumber, setInstitution, setIssue, setJournal, setLanguage, setMediaType, setNote, setPages, setPatentData, setPlaceOfPublication, setPublisher, setRawContent, setRepository, setSource, setTitle, setType, setURI, setURL, setVersion, setVolume, setWebsiteTitle, setYear, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SeqCitation

public SeqCitation()

Method Detail

setSeqLocation

public SeqCitation setSeqLocation(SeqLocation inValue)

getSeqLocation

public SeqLocation getSeqLocation()

setPubMedId

public SeqCitation setPubMedId(String inValue)

getPubMedId

public String getPubMedId()

setRemark

public SeqCitation setRemark(String inValue)

getRemark

public String getRemark()

setSubmissionDate

public SeqCitation setSubmissionDate(Date inValue)

getSubmissionDate

public Date getSubmissionDate()

setContactInfo

public SeqCitation setContactInfo(String inValue)

getContactInfo

public String getContactInfo()

setArticleNumber

public SeqCitation setArticleNumber(String inValue)

Description copied from class: Citation

Specify the article number for the citation source. Often used by online-only publishers.

Overrides:

setArticleNumber in class Citation

Parameters:

inValue - the article number

Returns:

this Citation object to facilitate method chaining.

setDOI

public SeqCitation setDOI(String inValue)

Description copied from class: Citation

Specifies the digital object identifier (DOI) for the citation. The DOI is a unique alphanumeric string assigned by a registration agency (the International DOI Foundation) to identify content and provide a persistent link to its location on the Internet.

Overrides:

setDOI in class Citation

Parameters:

inValue - the DOI string

Returns:

this Citation object to facilitate method chaining.

setISBN

public SeqCitation setISBN(String inValue)

Description copied from class: Citation

Specifies the international standard book number (ISBN) for the citation.

Overrides:

setISBN in class Citation

Parameters:

inValue - the ISBN string

Returns:

this Citation object to facilitate method chaining.

setISSN

public SeqCitation setISSN(String inValue)

Description copied from class: Citation

Specifies the international standard serial number (ISSN) for the citation. From the issn.org website: "An ISSN is an 8-digit code used to identify newspapers, journals, magazines and periodicals of all kinds and on all media–print and electronic."

Overrides:

setISSN in class Citation

Parameters:

inValue - the ISSN string

Returns:

this Citation object to facilitate method chaining.