com.hfg.bio.seq.alignment.blast

Enum BLAST_Program

java.lang.Object

java.lang.Enum<BLAST_Program>

com.hfg.bio.seq.alignment.blast.BLAST_Program

All Implemented Interfaces:

Serializable, Comparable<BLAST_Program>

public enum BLAST_Program
extends Enum<BLAST_Program>

BLAST search programs.

Enum Constant Summary

Enum Constants

Enum Constant and Description
blastn
blastp
blastx
tblastn
tblastx

Method Summary

Modifier and Type	Method and Description
BioSequenceType	getDatabaseBioSequenceType()
String	getDescription()
BioSequenceType	getQueryBioSequenceType()
static BLAST_Program	valueOf(String name) Returns the enum constant of this type with the specified name.
static BLAST_Program[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

blastn

public static final BLAST_Program blastn

blastp

public static final BLAST_Program blastp

blastx

public static final BLAST_Program blastx

tblastn

public static final BLAST_Program tblastn

tblastx

public static final BLAST_Program tblastx

Method Detail

values

public static BLAST_Program[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (BLAST_Program c : BLAST_Program.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static BLAST_Program valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getQueryBioSequenceType

public BioSequenceType getQueryBioSequenceType()

getDatabaseBioSequenceType

public BioSequenceType getDatabaseBioSequenceType()

getDescription

public String getDescription()