Uses of Class
com.hfg.setting.Settings

Packages that use Settings

Package	Description
com.hfg.bio
com.hfg.bio.phylogeny
com.hfg.bio.proteinproperty	Classes for calculating physical properties of proteins.
com.hfg.bio.seq.alignment.blast
com.hfg.bio.seq.alignment.muscle
com.hfg.math
com.hfg.setting
com.hfg.sql.jdbc	JDBC4-compatible classes for database access.
com.hfg.svg

Uses of Settings in com.hfg.bio

Subclasses of Settings in com.hfg.bio

Modifier and Type	Class and Description
class	DigestSettings Settings for protein digestion via protease(s).

Uses of Settings in com.hfg.bio.phylogeny

Subclasses of Settings in com.hfg.bio.phylogeny

Modifier and Type	Class and Description
class	TreeDisplaySettings Phylogenetic tree display options for use with NewickTree.

Uses of Settings in com.hfg.bio.proteinproperty

Subclasses of Settings in com.hfg.bio.proteinproperty

Modifier and Type	Class and Description
class	SimpleProteinPropertyCalcSettings Settings for performing physical property calculations on proteins.

Uses of Settings in com.hfg.bio.seq.alignment.blast

Subclasses of Settings in com.hfg.bio.seq.alignment.blast

Modifier and Type	Class and Description
class	BLAST_Settings Settings used for BLAST search execution.

Uses of Settings in com.hfg.bio.seq.alignment.muscle

Subclasses of Settings in com.hfg.bio.seq.alignment.muscle

Modifier and Type	Class and Description
class	MuscleSettings Settings used for Muscle multiple sequence alignment execution.

Uses of Settings in com.hfg.math

Subclasses of Settings in com.hfg.math

Modifier and Type	Class and Description
class	HistogramSvgSettings Settings for use with generating histogram SVGs.

Uses of Settings in com.hfg.setting

Methods in com.hfg.setting that return Settings

Modifier and Type	Method and Description
Settings	Settings.add(Setting inValue)
Settings	Settings.clone()
Settings	Settings.setName(String inName)
Settings	Settings.setTagName(XMLName inName)

Uses of Settings in com.hfg.sql.jdbc

Subclasses of Settings in com.hfg.sql.jdbc

Modifier and Type	Class and Description
class	JDBCConnectionPoolSettings Settings for a JDBC-compatible connection pool.
class	JDBCConnectionSettings Settings for a JDBC-compatible connection.

Uses of Settings in com.hfg.svg

Subclasses of Settings in com.hfg.svg

Modifier and Type	Class and Description
class	SvgGenerationSettings General settings for use with generating SVGs.