Uses of Interface
com.hfg.chem.Matter

Packages that use Matter

Package	Description
com.hfg.bio
com.hfg.bio.glyco
com.hfg.bio.seq
com.hfg.bio.seq.genomic
com.hfg.chem
com.hfg.chem.solution

Uses of Matter in com.hfg.bio

Classes in com.hfg.bio that implement Matter

Modifier and Type	Class and Description
class	AminoAcid Amino Acid.
class	CTerminalGroup C-terminal protein group.
class	DigestFragment Product of a proteolytic digest.
class	NTerminalGroup N-terminal protein group.
class	Nucleotide Nucleotide.

Uses of Matter in com.hfg.bio.glyco

Classes in com.hfg.bio.glyco that implement Matter

Modifier and Type	Class and Description
class	Glycan Common mammalian polysaccharide structures.
class	Monosaccharide Monosaccharide values.

Uses of Matter in com.hfg.bio.seq

Subinterfaces of Matter in com.hfg.bio.seq

Modifier and Type	Interface and Description
interface	BioSequence Interface for a biological Protein, DNA, or RNA sequence.
interface	BioSequencePlus Interface for an exetended biological protein, DNA, or RNA sequence with support for features, citations, db xrefs, etc.

Classes in com.hfg.bio.seq that implement Matter

Modifier and Type	Class and Description
class	BioSequenceImpl Biological Protein, DNA, or RNA sequence.
class	BioSequencePlusImpl Exetended biological protein, DNA, or RNA sequence with support for features, citations, db xrefs, etc.
class	NucleicAcid Biological DNA or RNA sequence.
class	Protein Biological protein sequence.
class	ProteinXLink Biological protein sequence crosslink.
class	ProteinXLinkType Biological protein sequence cross-link types.

Uses of Matter in com.hfg.bio.seq.genomic

Classes in com.hfg.bio.seq.genomic that implement Matter

Modifier and Type	Class and Description
class	Intron An intron in a gene.

Uses of Matter in com.hfg.chem

Classes in com.hfg.chem that implement Matter

Modifier and Type	Class and Description
class	Element Atomic element.
class	Isotope Isotope.
class	Molecule Generic chemical entity.

Methods in com.hfg.chem with parameters of type Matter

Modifier and Type	Method and Description
ElementalComposition	ElementalComposition.add(Matter inValue)
Molecule	Molecule.add(Matter inValue)
Molecule	Molecule.add(Matter inValue, int inCount)
ElementalComposition	ElementalComposition.remove(Matter inValue)
Molecule	Molecule.remove(Matter inValue)
Molecule	Molecule.remove(Matter inValue, int inCount)

Constructors in com.hfg.chem with parameters of type Matter

Constructor and Description
Molecule(Matter inInitialValue)

Uses of Matter in com.hfg.chem.solution

Methods in com.hfg.chem.solution that return Matter

Modifier and Type	Method and Description
Matter	MixtureComponent.getSubstance()

Methods in com.hfg.chem.solution with parameters of type Matter

Modifier and Type	Method and Description
Quantity	AqueousSolution.calcMassOfComponentNeeded(Matter inComponent)
AqueousSolution	AqueousSolution.defineComponent(Matter inSubstance, Quantity inConcentration)
Quantity	AqueousSolution.getQuantity(Matter inMatter)

Constructors in com.hfg.chem.solution with parameters of type Matter

Constructor and Description
MixtureComponent(Matter inSubstance, Quantity inQuantity)