Uses of Class
com.hfg.chem.IonizableGroup

Packages that use IonizableGroup

Package	Description
com.hfg.bio
com.hfg.bio.glyco
com.hfg.bio.proteinproperty	Classes for calculating physical properties of proteins.
com.hfg.chem

Uses of IonizableGroup in com.hfg.bio

Methods in com.hfg.bio that return IonizableGroup

Modifier and Type	Method and Description
IonizableGroup	KaSet.getCTerminalKa(CTerminalGroup inCTerminalGroup, AminoAcid inCTerminalResidue)
IonizableGroup	KaSet.getCTerminalSidechainKa(AminoAcid inResidue)
IonizableGroup	KaSet.getNTerminalKa(NTerminalGroup inNTerminalGroup, AminoAcid inNTerminalResidue)

Methods in com.hfg.bio that return types with arguments of type IonizableGroup

Modifier and Type	Method and Description
List<IonizableGroup>	KaSet.getIonizableGroups(Molecule inResidue)
Collection<IonizableGroup>	AminoAcid.getSidechainKas() Returns any defined sidechain Ka's.

Methods in com.hfg.bio with parameters of type IonizableGroup

Modifier and Type	Method and Description
CTerminalGroup	CTerminalGroup.addKa(IonizableGroup inValue)
NTerminalGroup	NTerminalGroup.addKa(IonizableGroup inValue)
KaSet	KaSet.addpKa(Molecule inMolecule, IonizableGroup inIonizableGroup) Adds a pKa value for the specified molecule to the set.
AminoAcid	AminoAcid.addSidechainKa(IonizableGroup inValue)

Method parameters in com.hfg.bio with type arguments of type IonizableGroup

Modifier and Type	Method and Description
void	AminoAcid.setSidechainKas(Collection<IonizableGroup> inKas) Sets the sidechain Ka's.

Uses of IonizableGroup in com.hfg.bio.glyco

Methods in com.hfg.bio.glyco that return types with arguments of type IonizableGroup

Modifier and Type	Method and Description
List<IonizableGroup>	Glycan.getKas() Returns a List of IonizableGroup objects.

Methods in com.hfg.bio.glyco with parameters of type IonizableGroup

Modifier and Type	Method and Description
Monosaccharide	Monosaccharide.addKa(IonizableGroup inValue)

Uses of IonizableGroup in com.hfg.bio.proteinproperty

Methods in com.hfg.bio.proteinproperty that return types with arguments of type IonizableGroup

Modifier and Type	Method and Description
protected Map<IonizableGroup,Integer>	IsoelectricPoint.constructIonizableGroupMap(Protein inProtein, S inSettings)

Uses of IonizableGroup in com.hfg.chem

Methods in com.hfg.chem that return types with arguments of type IonizableGroup

Modifier and Type	Method and Description
List<IonizableGroup>	Molecule.getKas() Returns a List of IonizableGroup objects.

Methods in com.hfg.chem with parameters of type IonizableGroup

Modifier and Type	Method and Description
Molecule	Molecule.addKa(IonizableGroup inValue)
Molecule	Molecule.addKa(IonizableGroup inValue, int inCount)
int	IonizableGroup.compareTo(IonizableGroup inObj2)