Uses of Class
com.hfg.bio.seq.genomic.assembly.NCBIGenomicAssemblyInfo

Packages that use NCBIGenomicAssemblyInfo

Package	Description
com.hfg.bio.seq.genomic.assembly

Uses of NCBIGenomicAssemblyInfo in com.hfg.bio.seq.genomic.assembly

Methods in com.hfg.bio.seq.genomic.assembly that return NCBIGenomicAssemblyInfo

Modifier and Type	Method and Description
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setAssemblyAccession(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setAssemblyLevel(GenomicAssemblyLevel inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setAssemblyName(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setAssemblyReleaseType(GenomicAssemblyReleaseType inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setAssemblyVersionStatus(GenomicAssemblyVersionStatus inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setBioprojectAccession(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setBiosampleAccession(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setExcludedFromRefSeq(boolean inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setFTP_Path(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setGenBankRefSeqPairedAssembly(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setGenomicRepresentation(GenomicRepresentation inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setInfraspecificName(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setIsolate(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setOrganismTaxon(NCBITaxon inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setPairedAssemblyComparison(GenomicPairedAssemblyComparison inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setRefSeqCategory(GenomicRefSeqCategory inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setRelationToTypeMaterial(GenomicRelationToTypeMaterial inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setReleaseDate(Date inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setSpeciesTaxon(NCBITaxon inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setSubmitter(String inValue)
NCBIGenomicAssemblyInfo	NCBIGenomicAssemblyInfo.setWGSAccession(String inValue)

Methods in com.hfg.bio.seq.genomic.assembly that return types with arguments of type NCBIGenomicAssemblyInfo

Modifier and Type	Method and Description
static Map<NCBITaxon,List<NCBIGenomicAssemblyInfo>>	NCBIGenomicAssemblyInfo.extractInfoFromAssemblySummaryFile(File inFile) Use for processing an assembly_summary.txt file from the NCBI ftp site.

Methods in com.hfg.bio.seq.genomic.assembly with parameters of type NCBIGenomicAssemblyInfo

Modifier and Type	Method and Description
int	NCBIGenomicAssemblyInfo.compareTo(NCBIGenomicAssemblyInfo inObj2) Compares this object with the specified object for order.