Uses of Class
com.hfg.bio.seq.format.SeqIOException

Packages that use SeqIOException

Package	Description
com.hfg.bio.seq
com.hfg.bio.seq.format
com.hfg.bio.seq.format.genbank

Uses of SeqIOException in com.hfg.bio.seq

Methods in com.hfg.bio.seq that throw SeqIOException

Modifier and Type	Method and Description
BioSequence	BioSequenceImpl.setSequence(Reader inReader)

Uses of SeqIOException in com.hfg.bio.seq.format

Subclasses of SeqIOException in com.hfg.bio.seq.format

Modifier and Type	Class and Description
class	SeqFormatException Indicates an exception with the format of the sequence record being read.

Methods in com.hfg.bio.seq.format that throw SeqIOException

Modifier and Type	Method and Description
List<T>	ReadableSeqFormat.read(BufferedReader inFile)
List<T>	ReadableSeqFormatBase.read(BufferedReader inReader)
List<T>	ReadableSeqFormat.read(File inFile)
List<T>	ReadableSeqFormatBase.read(File inFile)
T	EMBL.readRecord(BufferedReader inReader)
T	FASTA.readRecord(BufferedReader inReader)
T	FASTQ.readRecord(BufferedReader inReader)
T	GenBank.readRecord(BufferedReader inReader)
T	ReadableSeqFormat.readRecord(BufferedReader inReader)
T	ReadableSeqFormat.readRecord(CharSequence inString)
T	ReadableSeqFormatBase.readRecord(CharSequence inString)
String	FASTA.write(Collection<T> inSeqs)
String	GenBank.write(Collection<T> inSeqs)
String	WIPO_ST_25.write(Collection<T> inSeqs)
void	WIPO_ST_25.write(Collection<T> inSeqs, Writer inWriter)
String	FASTA.write(T inSeq)
String	FASTQ.write(T inSeq)
String	GenBank.write(T inSeq)
String	WIPO_ST_25.write(T inSeq)
String	WritableSeqFormat.write(T inSeq)
void	FASTA.write(T inSeq, OutputStream inStream)
void	FASTQ.write(T inSeq, OutputStream inStream)
void	GenBank.write(T inSeq, OutputStream inStream)
void	WIPO_ST_25.write(T inSeq, OutputStream inStream)
void	FASTA.write(T inSeq, Writer inWriter)
void	FASTQ.write(T inSeq, Writer inWriter)
void	GenBank.write(T inSeq, Writer inWriter)
void	WIPO_ST_25.write(T inSeq, Writer inWriter)
void	WritableSeqFormat.write(T inSeq, Writer inWriter)
void	WIPO_ST_25.writeInitialIdentifiers(OutputStream inStream, int inNumSeqs)
void	WIPO_ST_25.writeInitialIdentifiers(Writer inWriter, int inNumSeqs)

Uses of SeqIOException in com.hfg.bio.seq.format.genbank

Subclasses of SeqIOException in com.hfg.bio.seq.format.genbank

Modifier and Type	Class and Description
class	InvalidGenBankKeywordException Indicates that an invalid or unrecognized GenBank keyword has been encountered.
class	InvalidGenBankSubkeywordException Indicates that an invalid or unrecognized GenBank subkeyword has been encountered.