Uses of Interface
com.hfg.bio.seq.format.ReadableSeqFormat

Packages that use ReadableSeqFormat

Package	Description
com.hfg.bio.seq.format

Uses of ReadableSeqFormat in com.hfg.bio.seq.format

Classes in com.hfg.bio.seq.format that implement ReadableSeqFormat

Modifier and Type	Class and Description
class	EMBL<T extends BioSequence> EMBL sequence format.
class	FASTA<T extends BioSequence> FASTA sequence format.
class	FASTQ<T extends NucleicAcid> FASTQ sequence format encompassing sequences and their per-base sequencing quality scores.
class	GenBank<T extends BioSequence> GenBank sequence format.
class	IlluminaFASTQ<T extends NucleicAcid> FASTQ sequence format from Illumina.
class	ReadableSeqFormatBase<T extends BioSequence> Base class for readable sequence formats.

Methods in com.hfg.bio.seq.format that return ReadableSeqFormat

Modifier and Type	Method and Description
static <T extends BioSequence> ReadableSeqFormat<T>	BufferedSeqReader.determineSeqFormat(BufferedReader inReader, Collection<ReadableSeqFormat<T>> inSeqFormatObjects)
ReadableSeqFormat<T>	BufferedSeqReader.getSeqFormat()

Method parameters in com.hfg.bio.seq.format with type arguments of type ReadableSeqFormat

Modifier and Type	Method and Description
static <T extends BioSequence> ReadableSeqFormat<T>	BufferedSeqReader.determineSeqFormat(BufferedReader inReader, Collection<ReadableSeqFormat<T>> inSeqFormatObjects)

Constructors in com.hfg.bio.seq.format with parameters of type ReadableSeqFormat

Constructor and Description
BufferedSeqReader(BufferedReader inReader, ReadableSeqFormat<T> inSeqFormatObj)