Uses of Class
com.hfg.bio.proteinproperty.ProteinAnalysisMode

Packages that use ProteinAnalysisMode

Package	Description
com.hfg.bio
com.hfg.bio.proteinproperty	Classes for calculating physical properties of proteins.
com.hfg.bio.seq

Uses of ProteinAnalysisMode in com.hfg.bio

Methods in com.hfg.bio that return ProteinAnalysisMode

Modifier and Type	Method and Description
ProteinAnalysisMode	KaSet.getDefaultProteinAnalysisMode()

Methods in com.hfg.bio with parameters of type ProteinAnalysisMode

Modifier and Type	Method and Description
KaSet	KaSet.setDefaultProteinAnalysisMode(ProteinAnalysisMode inValue)

Uses of ProteinAnalysisMode in com.hfg.bio.proteinproperty

Subclasses of ProteinAnalysisMode in com.hfg.bio.proteinproperty

Modifier and Type	Class and Description
class	NativeAnalysisMode Native protein analysis mode.
class	ReducedAnalysisMode Reduced (and denatured) protein analysis mode.

Methods in com.hfg.bio.proteinproperty that return ProteinAnalysisMode

Modifier and Type	Method and Description
ProteinAnalysisMode	SimpleProteinPropertyCalcSettings.getProteinAnalysisMode()
static ProteinAnalysisMode	ProteinAnalysisMode.instantiate(XMLTag inXMLNode)

Methods in com.hfg.bio.proteinproperty with parameters of type ProteinAnalysisMode

Modifier and Type	Method and Description
SimpleProteinPropertyCalcSettings	SimpleProteinPropertyCalcSettings.setProteinAnalysisMode(ProteinAnalysisMode inValue)

Uses of ProteinAnalysisMode in com.hfg.bio.seq

Methods in com.hfg.bio.seq with parameters of type ProteinAnalysisMode

Modifier and Type	Method and Description
Double	Protein.getAverageMass(ProteinAnalysisMode inMode)
Map<Element,Float>	Protein.getElementalComposition(ProteinAnalysisMode inMode) Returns an unmodifiable copy of the elemental composition Map adjusted (if necessary) for the specified protein analysis mode.
Float	Protein.getIsoelectricPoint(KaSet inKaSet, ProteinAnalysisMode inMode) Determines the isoelectric point (the pH at which the net charge is zero) for the protein.
Double	Protein.getMonoisotopicMass(ProteinAnalysisMode inMode)
Double	Protein.getNetCharge(double pH, KaSet inKaSet, ProteinAnalysisMode inMode) Estimates the protein's net charge at the specified pH.
Double	Protein.getOrganicAverageMass(ProteinAnalysisMode inMode)