Uses of Class
com.hfg.bio.phylogeny.PhyloNode

Packages that use PhyloNode

Package	Description
com.hfg.bio.phylogeny

Uses of PhyloNode in com.hfg.bio.phylogeny

Methods in com.hfg.bio.phylogeny that return PhyloNode

Modifier and Type	Method and Description
PhyloNode	PhylogeneticTree.getClosestLeaf(PhyloNode inNode)
PhyloNode	PhyloNode.getParentNode()
PhyloNode	PhylogeneticTree.getRootNode()
PhyloNode	PhyloNode.setAngle(Double inAngleInRadians)
PhyloNode	PhyloNode.setColor(Color inValue)
PhyloNode	PhyloNode.setId(int inValue)
PhyloNode	PhyloNode.setId(String inValue)
PhyloNode	PhyloNode.setLabel(String inValue)
PhyloNode	PhyloNode.setTooltip(String inValue)

Methods in com.hfg.bio.phylogeny that return types with arguments of type PhyloNode

Modifier and Type	Method and Description
List<PhyloNode>	PhylogeneticTree.getAllNodes()
List<PhyloNode>	PhylogeneticTree.getAllNodesOrderedByDistance()
List<PhyloNode>	PhyloNode.getChildNodes()
List<Edge<PhyloNode>>	PhyloNode.getEdges()
List<Edge<PhyloNode>>	PhyloNode.getLeafFacingEdges() Returns the leaf-facing edges.
List<PhyloNode>	PhylogeneticTree.getLeafNodes()
List<Edge<PhyloNode>>	PhylogeneticTree.getMaxLeaf2LeafEdgeTrail()
Edge<PhyloNode>	PhyloNode.getParentEdge() Returns the root-facing edge.
List<List<PhyloNode>>	PhylogeneticTree.groupNodes(float inBranchLengthTraversalLimit, PhylogeneticTree.Flag... inFlags)

Methods in com.hfg.bio.phylogeny with parameters of type PhyloNode

Modifier and Type	Method and Description
void	PhyloNode.addEdge(PhyloNode in2ndNode, Float inDistance)
Float	PhyloNode.distanceTo(PhyloNode inNode2) Calculates the distance between two nodes in the tree.
PhyloNode	PhylogeneticTree.getClosestLeaf(PhyloNode inNode)
protected boolean	PhyloNode.removeEdgeFrom(PhyloNode inNode)
void	PhylogeneticTree.removeNode(PhyloNode inNode)
void	PhylogeneticTree.setRootNode(PhyloNode inValue)

Method parameters in com.hfg.bio.phylogeny with type arguments of type PhyloNode

Modifier and Type	Method and Description
protected void	PhyloNode.addEdge(Edge<PhyloNode> inEdge)
protected boolean	PhyloNode.removeEdge(Edge<PhyloNode> inEdge)
protected void	PhyloNode.setRootDirection(Edge<PhyloNode> inEdge)