Uses of Class
com.hfg.math.Range

Packages that use Range

Package	Description
com.hfg.bio.seq
com.hfg.bio.seq.alignment
com.hfg.bio.seq.format.feature
com.hfg.bio.seq.format.feature.genbank
com.hfg.bio.seq.format.feature.uniprot
com.hfg.bio.seq.format.genbank
com.hfg.graphics
com.hfg.math
com.hfg.svg
com.hfg.util	Various utility classes.
com.hfg.util.io	Various IO utility classes.

Uses of Range in com.hfg.bio.seq

Subclasses of Range in com.hfg.bio.seq

Modifier and Type	Class and Description
class	SeqLocation 1-based biological sequence location object.

Constructors in com.hfg.bio.seq with parameters of type Range

Constructor and Description
SeqLocation(Range<Integer> inRange)

Uses of Range in com.hfg.bio.seq.alignment

Methods in com.hfg.bio.seq.alignment that return types with arguments of type Range

Modifier and Type	Method and Description
List<Range<Integer>>	AlignmentScoring.getScoringBoundaries()

Method parameters in com.hfg.bio.seq.alignment with type arguments of type Range

Modifier and Type	Method and Description
AlignmentScoring	AlignmentScoring.setScoringBoundaries(List<Range<Integer>> inValue) Specifies an optional 1-based list of alignment position ranges which should be considered for scoring.

Uses of Range in com.hfg.bio.seq.format.feature

Methods in com.hfg.bio.seq.format.feature that return Range

Modifier and Type	Method and Description
Range<Integer>	BasicSeqFeatureLocation.toIntRange()
Range<Integer>	SeqFeatureLocation.toIntRange()

Uses of Range in com.hfg.bio.seq.format.feature.genbank

Methods in com.hfg.bio.seq.format.feature.genbank that return Range

Modifier and Type	Method and Description
Range<Integer>	GenBankFeatureLocation.toIntRange()

Uses of Range in com.hfg.bio.seq.format.feature.uniprot

Methods in com.hfg.bio.seq.format.feature.uniprot that return Range

Modifier and Type	Method and Description
Range<Integer>	UniProtFeatureLocation.toIntRange()

Uses of Range in com.hfg.bio.seq.format.genbank

Methods in com.hfg.bio.seq.format.genbank that return Range

Modifier and Type	Method and Description
Range<Integer>	GenBankReference.getPages()

Methods in com.hfg.bio.seq.format.genbank with parameters of type Range

Modifier and Type	Method and Description
GenBankReference	GenBankReference.setPages(Range<Integer> inValue)

Uses of Range in com.hfg.graphics

Methods in com.hfg.graphics that return Range

Modifier and Type	Method and Description
Range<T>	ScaleColorist.getRange()

Methods in com.hfg.graphics that return types with arguments of type Range

Modifier and Type	Method and Description
Map<Range<T>,ColorSpec>	RangeColorist.getRangeMap()

Methods in com.hfg.graphics with parameters of type Range

Modifier and Type	Method and Description
RangeColorist	RangeColorist.addRange(Range<T> inRange, ColorSpec inColorSpec)

Constructors in com.hfg.graphics with parameters of type Range

Constructor and Description
ScaleColorist(ColorScale inColorScale, Range<T> inRange)

Uses of Range in com.hfg.math

Methods in com.hfg.math that return Range

Modifier and Type	Method and Description
Range<T>	Range.clone()
Range<S>	Histogram.getOverallRange()
Range<T>	Range.intersection(Range<T> inRange2)
Range<T>	Range.setEnd(T inValue)
Range<T>	Range.setStart(T inValue)
static <T extends Number> Range<T>	Range.superUnion(Collection<Range<T>> inOrigList) Returns a single Range that encompasses the collection of input ranges and ignores internal gaps.
Range<T>	Range.superUnion(Range<T> inRange2) Returns a single Range that encompasses both input ranges and ignores internal gaps.

Methods in com.hfg.math that return types with arguments of type Range

Modifier and Type	Method and Description
Map<Range<S>,Counter>	Histogram.getOrderedRangeMap()
List<Range<S>>	Histogram.getOrderedRanges()
List<Range<T>>	Range.subtract(Range<T> inRange2)
static <T extends Number> List<Range<T>>	Range.union(Collection<Range<T>> inOrigList) Collapses a collection of specified ranges.

Methods in com.hfg.math with parameters of type Range

Modifier and Type	Method and Description
int	Range.compareTo(Range<T> inObj2)
boolean	Range.contains(Range<T> inRange2)
Range<T>	Range.intersection(Range<T> inRange2)
boolean	Range.intersects(Range<T> inRange2)
List<Range<T>>	Range.subtract(Range<T> inRange2)
Range<T>	Range.superUnion(Range<T> inRange2) Returns a single Range that encompasses both input ranges and ignores internal gaps.

Method parameters in com.hfg.math with type arguments of type Range

Modifier and Type	Method and Description
static <T extends Number> Range<T>	Range.superUnion(Collection<Range<T>> inOrigList) Returns a single Range that encompasses the collection of input ranges and ignores internal gaps.
static <T extends Number> List<Range<T>>	Range.union(Collection<Range<T>> inOrigList) Collapses a collection of specified ranges.

Constructors in com.hfg.math with parameters of type Range

Constructor and Description
ListCombinationIterator(List<? extends Collection<T>> inListOfLists, Range<Integer> inCombinationSizeRange)

Uses of Range in com.hfg.svg

Methods in com.hfg.svg with parameters of type Range

Modifier and Type	Method and Description
float	SvgGenerationSettings.calculateXScalingFactor(Range inXRange)
float	SvgGenerationSettings.calculateYScalingFactor(Range inYRange)

Uses of Range in com.hfg.util

Methods in com.hfg.util that return Range

Modifier and Type	Method and Description
static Range<Integer>	StringUtil.getRangeForUnicodeBlock(Character.UnicodeBlock inBlock)

Uses of Range in com.hfg.util.io

Constructors in com.hfg.util.io with parameters of type Range

Constructor and Description
SegmentReader(Reader inReader, Range<Integer> inSegment)