Uses of Class
com.hfg.bio.seq.translation.Codon

Packages that use Codon

Package	Description
com.hfg.bio.seq.translation

Uses of Codon in com.hfg.bio.seq.translation

Methods in com.hfg.bio.seq.translation that return Codon

Modifier and Type	Method and Description
Codon	CodonTable.getCodon(String inCodon) Can be used to retrieve the internal Codon object which can contain the AA mapping and codon usage data.
Codon	CodonTable.getCodonForAA_viaWeightedSelection(char inAA) Returns a weighted randomly selected codon for the specified amino acid.
Codon	CodonTable.getCodonForAA_viaWeightedSelection(char inAA, float inMinBias) Returns a weighted randomly selected codon meeting a specified minimum usage bias for the specified amino acid.
Codon	Codon.setAA(Character inValue)
Codon	Codon.setCodonUsage(CodonUsage inValue)
Codon	Codon.setIsAltInitiation(boolean inValue)
Codon	Codon.setIsInitiation(boolean inValue)

Methods in com.hfg.bio.seq.translation that return types with arguments of type Codon

Modifier and Type	Method and Description
Set<Codon>	CodonTable.getCodons()
Set<Codon>	CodonTable.getCodonsForAA(char inAA)

Methods in com.hfg.bio.seq.translation with parameters of type Codon

Modifier and Type	Method and Description
CodonTable	CodonTable.addCodon(Codon inValue)
char	CodonTable.translateCodon(Codon inCodon)