Uses of Class
com.hfg.bio.proteinproperty.SimpleProteinPropertyCalcSettings

Packages that use SimpleProteinPropertyCalcSettings

Package	Description
com.hfg.bio.proteinproperty	Classes for calculating physical properties of proteins.

Uses of SimpleProteinPropertyCalcSettings in com.hfg.bio.proteinproperty

Classes in com.hfg.bio.proteinproperty with type parameters of type SimpleProteinPropertyCalcSettings

Modifier and Type	Class and Description
class	IsoelectricPoint<S extends SimpleProteinPropertyCalcSettings> Isoelectric point calculation packaged as a protein property for ease of integration with other protein properties.
class	SimpleProteinProperty<S extends SimpleProteinPropertyCalcSettings,T> Abstract base Class for single value protein properties.
interface	SingleValueProteinProperty<S extends SimpleProteinPropertyCalcSettings,T>

Methods in com.hfg.bio.proteinproperty that return SimpleProteinPropertyCalcSettings

Modifier and Type	Method and Description
SimpleProteinPropertyCalcSettings	SimpleProteinPropertyCalcSettings.clone()
SimpleProteinPropertyCalcSettings	SimpleProteinPropertyCalcSettings.setProteinAnalysisMode(ProteinAnalysisMode inValue)

Methods in com.hfg.bio.proteinproperty with parameters of type SimpleProteinPropertyCalcSettings

Modifier and Type	Method and Description
String	ChemicalFormula.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)
Integer	ExtinctionCoeff.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)
Float	Hydrophobicity.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)
Double	Mass.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings) Determines the mass of the specified protein.
Float	PctExtinctionCoeff.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)
Integer	SeqLength.calculate(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)
protected int	ExtinctionCoeff.getRawValue(Protein inProtein, SimpleProteinPropertyCalcSettings inSettings)