001package com.hfg.bio.seq.pattern;
002
003import com.hfg.bio.seq.SeqLocation;
004
005//------------------------------------------------------------------------------
006/**
007 Container for a protein pattern match.
008 <div>
009  @author J. Alex Taylor, hairyfatguy.com
010 </div>
011 */
012//------------------------------------------------------------------------------
013// com.hfg Library
014//
015// This library is free software; you can redistribute it and/or
016// modify it under the terms of the GNU Lesser General Public
017// License as published by the Free Software Foundation; either
018// version 2.1 of the License, or (at your option) any later version.
019//
020// This library is distributed in the hope that it will be useful,
021// but WITHOUT ANY WARRANTY; without even the implied warranty of
022// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
023// Lesser General Public License for more details.
024//
025// You should have received a copy of the GNU Lesser General Public
026// License along with this library; if not, write to the Free Software
027// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
028//
029// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
030// jataylor@hairyfatguy.com
031//------------------------------------------------------------------------------
032
033public class ProteinPatternMatch extends SeqPatternMatch
034{
035   //###########################################################################
036   // CONSTRUCTORS
037   //###########################################################################
038
039   //--------------------------------------------------------------------------
040   public ProteinPatternMatch(ProteinPattern inPattern, String inSeq, SeqLocation inLocation)
041   {
042      super(inPattern, inSeq, inLocation);
043   }
044
045   //###########################################################################
046   // PUBLIC METHODS
047   //###########################################################################
048
049   //--------------------------------------------------------------------------
050   public ProteinPattern getPattern()
051   {
052      return (ProteinPattern) super.getPattern();
053   }
054
055   //--------------------------------------------------------------------------
056   public ProteinPatternMatch setSequence(String inValue)
057   {
058      return (ProteinPatternMatch) super.setSequence(inValue);
059   }
060}