001package com.hfg.bio.seq.alignment.blast;
002
003
004//==============================================================================
005/**
006 Container for BLAST search output.
007 <div>
008 @author J. Alex Taylor, hairyfatguy.com
009 </div>
010 */
011//==============================================================================
012// com.hfg XML/HTML Coding Library
013//
014// This library is free software; you can redistribute it and/or
015// modify it under the terms of the GNU Lesser General Public
016// License as published by the Free Software Foundation; either
017// version 2.1 of the License, or (at your option) any later version.
018//
019// This library is distributed in the hope that it will be useful,
020// but WITHOUT ANY WARRANTY; without even the implied warranty of
021// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
022// Lesser General Public License for more details.
023//
024// You should have received a copy of the GNU Lesser General Public
025// License along with this library; if not, write to the Free Software
026// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
027//
028// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
029// jataylor@hairyfatguy.com
030//==============================================================================
031
032public class BLAST_Output
033{
034   private Integer mExitStatus;
035   private String  mStdErr;
036   private String  mStdOut;
037   private String  mExecutedCmd;
038
039
040   //###########################################################################
041   // PUBLIC METHODS
042   //###########################################################################
043
044   //---------------------------------------------------------------------------
045   public BLAST_Output setExitStatus(Integer inValue)
046   {
047      mExitStatus = inValue;
048      return this;
049   }
050
051   //---------------------------------------------------------------------------
052   public Integer getExitStatus()
053   {
054      return mExitStatus;
055   }
056
057
058   //---------------------------------------------------------------------------
059   public BLAST_Output setStdErr(String inValue)
060   {
061      mStdErr = inValue;
062      return this;
063   }
064
065   //---------------------------------------------------------------------------
066   public String getStdErr()
067   {
068      return mStdErr;
069   }
070
071
072   //---------------------------------------------------------------------------
073   public BLAST_Output setStdOut(String inValue)
074   {
075      mStdOut = inValue;
076      return this;
077   }
078
079   //---------------------------------------------------------------------------
080   public String getStdOut()
081   {
082      return mStdOut;
083   }
084
085
086   //---------------------------------------------------------------------------
087   public BLAST_Output setExecutedCmd(String inValue)
088   {
089      mExecutedCmd = inValue;
090      return this;
091   }
092
093   //---------------------------------------------------------------------------
094   public String getExecutedCmd()
095   {
096      return mExecutedCmd;
097   }
098
099}