001package com.hfg.bio.seq;
002
003
004//------------------------------------------------------------------------------
005/**
006 Factory for creating NucleicAcid sequence objects.
007 <div>
008  @author J. Alex Taylor, hairyfatguy.com
009 </div>
010 */
011//------------------------------------------------------------------------------
012// com.hfg Library
013//
014// This library is free software; you can redistribute it and/or
015// modify it under the terms of the GNU Lesser General Public
016// License as published by the Free Software Foundation; either
017// version 2.1 of the License, or (at your option) any later version.
018//
019// This library is distributed in the hope that it will be useful,
020// but WITHOUT ANY WARRANTY; without even the implied warranty of
021// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
022// Lesser General Public License for more details.
023//
024// You should have received a copy of the GNU Lesser General Public
025// License along with this library; if not, write to the Free Software
026// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
027//
028// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
029// jataylor@hairyfatguy.com
030//------------------------------------------------------------------------------
031
032public class NucleicAcidFactory implements BioSequenceFactory<NucleicAcid>
033{
034   private Integer mCompressionThreshold;
035
036   //---------------------------------------------------------------------------
037   public NucleicAcid createSeqObj()
038   {
039      NucleicAcid na = new NucleicAcid();
040      if (mCompressionThreshold != null)
041      {
042         na.setCompressionThreshold(mCompressionThreshold);
043      }
044
045      return na;
046   }
047
048
049   //---------------------------------------------------------------------------
050   public NucleicAcidFactory setCompressionThreshold(int inNumBytes)
051   {
052      mCompressionThreshold = inNumBytes;
053      return this;
054   }
055}